mRNA_M-pyrifera_M_contig111937.2495.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111937.2495.1
Unique NamemRNA_M-pyrifera_M_contig111937.2495.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A3E0Q637_9BACT (GxxExxY protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q637_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 3.400e-8
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGAN 96
            MKLLN P+GL++NFY E+LTDG+ R+ LPGAN
Sbjct:  101 MKLLNAPLGLLLNFYTEKLTDGLQRLLLPGAN 132          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A660QEU8_9BACT (GxxExxY protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A660QEU8_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 9.940e-8
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGANSE 102
            MKL+++PVGL+MNF+  +L DG++RM LPGAN E
Sbjct:   86 MKLMDIPVGLIMNFHEMKLVDGIYRMMLPGANRE 119          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A7C5QE38_9BACT (GxxExxY protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7C5QE38_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.930e-7
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGANSE 102
            MKLLN P+GL++NF+  +L DG+HR+ LPGAN E
Sbjct:  101 MKLLNTPIGLLINFHELKLADGIHRLMLPGANHE 134          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A146GCY5_TERSA (GxxExxY protein n=2 Tax=Terrimicrobium sacchariphilum TaxID=690879 RepID=A0A146GCY5_TERSA)

HSP 1 Score: 50.4 bits (119), Expect = 3.880e-7
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGANSE 102
            MKLLNVP+GL++NF+  +LT G+HRM LPG++ +
Sbjct:   52 MKLLNVPLGLLINFHEPKLTSGIHRMMLPGSSGK 85          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A2V5P3C2_9BACT (GxxExxY protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5P3C2_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 5.140e-7
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGAN 96
            MKLL+VPVGL++NF+  +L DG+HR+ LPGAN
Sbjct:  101 MKLLDVPVGLLINFHEMKLVDGIHRLILPGAN 132          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A1G4AJF4_9BACT (GxxExxY protein n=1 Tax=Verrucomicrobia bacterium RIFCSPLOWO2_12_FULL_64_8 TaxID=1802434 RepID=A0A1G4AJF4_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.020e-6
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGAN 96
            MKLLNVPVGL++NF   RL DGV R+ LPGAN
Sbjct:  101 MKLLNVPVGLLINFNTARLIDGVSRLILPGAN 132          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A4P5YCT3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5YCT3_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.040e-6
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGANSE 102
            MKLL++P+GL++NF V +LTDGV R+ LPGAN E
Sbjct:  101 MKLLDIPLGLLINFNVMKLTDGVSRLILPGANLE 134          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A8I1MLE9_9BACT (GxxExxY protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A8I1MLE9_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.040e-6
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGANSE 102
            MKLLNVP+GL++NF+  +LT G+HRM LPG++ +
Sbjct:  101 MKLLNVPLGLLINFHEPKLTSGIHRMMLPGSSGK 134          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: X0Y9E2_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0Y9E2_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 1.060e-6
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGANS 99
            MKLL++P+GL++NF VE+LTDGV R+ LP ANS
Sbjct:  101 MKLLDIPLGLLINFNVEKLTDGVSRLILPQANS 133          
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Match: A0A1H1SB26_9BACT (GxxExxY protein n=1 Tax=Opitutus sp. GAS368 TaxID=1882749 RepID=A0A1H1SB26_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 1.440e-6
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1
Query:    1 MKLLNVPVGLVMNFYVERLTDGVHRMYLPGAN 96
            MKLL+VPVGL++NF V +LTDGV R+ LPG N
Sbjct:  101 MKLLDVPVGLLINFNVSKLTDGVSRLMLPGVN 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111937.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A3E0Q637_9BACT3.400e-868.75GxxExxY protein n=1 Tax=Planctomycetes bacterium T... [more]
A0A660QEU8_9BACT9.940e-861.76GxxExxY protein n=1 Tax=Verrucomicrobia bacterium ... [more]
A0A7C5QE38_9BACT1.930e-761.76GxxExxY protein n=1 Tax=Verrucomicrobia bacterium ... [more]
A0A146GCY5_TERSA3.880e-758.82GxxExxY protein n=2 Tax=Terrimicrobium sacchariphi... [more]
A0A2V5P3C2_9BACT5.140e-765.63GxxExxY protein n=1 Tax=Verrucomicrobia bacterium ... [more]
A0A1G4AJF4_9BACT1.020e-671.88GxxExxY protein n=1 Tax=Verrucomicrobia bacterium ... [more]
A0A4P5YCT3_9BACT1.040e-664.71Uncharacterized protein n=1 Tax=Planctomycetia bac... [more]
A0A8I1MLE9_9BACT1.040e-658.82GxxExxY protein n=1 Tax=Verrucomicrobia bacterium ... [more]
X0Y9E2_9ZZZZ1.060e-666.67Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A1H1SB26_9BACT1.440e-668.75GxxExxY protein n=1 Tax=Opitutus sp. GAS368 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111937contigM-pyrifera_M_contig111937:482..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.759014-CDS-M-pyrifera_M_contig111937:481..5861622815632.759014-CDS-M-pyrifera_M_contig111937:481..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111937 482..586 -
1692277496.8254533-CDS-M-pyrifera_M_contig111937:481..5861692277496.8254533-CDS-M-pyrifera_M_contig111937:481..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111937 482..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111937.2495.1prot_M-pyrifera_M_contig111937.2495.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111937 482..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111937.2495.1

>prot_M-pyrifera_M_contig111937.2495.1 ID=prot_M-pyrifera_M_contig111937.2495.1|Name=mRNA_M-pyrifera_M_contig111937.2495.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
MKLLNVPVGLVMNFYVERLTDGVHRMYLPGANSE*
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mRNA from alignment at M-pyrifera_M_contig111937:482..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111937.2495.1 ID=mRNA_M-pyrifera_M_contig111937.2495.1|Name=mRNA_M-pyrifera_M_contig111937.2495.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=105bp|location=Sequence derived from alignment at M-pyrifera_M_contig111937:482..586- (Macrocystis pyrifera P11B4 male)
ATGAAGCTGTTGAATGTGCCCGTAGGATTGGTGATGAACTTCTACGTCGA ACGACTGACGGATGGCGTACATCGGATGTACTTGCCGGGTGCAAATAGCG AATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111937:482..586-

>mRNA_M-pyrifera_M_contig111937.2495.1 ID=mRNA_M-pyrifera_M_contig111937.2495.1|Name=mRNA_M-pyrifera_M_contig111937.2495.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig111937:482..586- (Macrocystis pyrifera P11B4 male)
ATGAAGCTGTTGAATGTGCCCGTAGGATTGGTGATGAACTTCTACGTCGA
ACGACTGACGGATGGCGTACATCGGATGTACTTGCCGGGTGCAAATAGCG
AATGAATGAAGCTGTTGAATGTGCCCGTAGGATTGGTGATGAACTTCTAC
GTCGAACGACTGACGGATGGCGTACATCGGATGTACTTGCCGGGTGCAAA
TAGCGAATGA
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