mRNA_M-pyrifera_M_contig111911.2488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111911.2488.1
Unique NamemRNA_M-pyrifera_M_contig111911.2488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: UPI00067DA23E (tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 n=2 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067DA23E)

HSP 1 Score: 68.2 bits (165), Expect = 5.400e-11
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRA----TEGKSSHLLLDRCTFKHKA----RLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            RQ + LL +M   GL+  ++  C+VE  AGKG +S  L RA     E  S+ LL+DR   +HK     R D+ A +  RA +A   +  VP          V ES+ +VG+ KH+CG+A DH+LR +
Sbjct:  159 RQTSSLLHVMEQAGLV--QDHTCYVELGAGKGIVSYYLWRAWCSAPESTSAALLVDRAALRHKRDNKLRGDRIARL--RADLADLALEKVP---------IVKESQSVVGLAKHLCGVATDHALRCV 272          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A7E5W7R0_TRINI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5W7R0_TRINI)

HSP 1 Score: 61.6 bits (148), Expect = 1.150e-8
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRA---TEGKSSHLLLDRCTFKHKA--RLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            RQ++ LL ++   GL+   E  C+VE  AGKG LS     A     G S+ LL+DR + +HK   +L   A +  RA +A   +  VP          V+  + +VG+ KH+CG+A D++LR +
Sbjct:  168 RQVSSLLWLVEDEGLVS--ENTCYVELGAGKGHLSYYACNAWCEEGGASAALLVDRASLRHKRDNKLRGRAALRLRADLAHLALERVP---------RVAACRALVGLAKHLCGVATDYALRCI 280          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A6J2K5U4_BOMMA (tRNA:m(4)X modification enzyme TRM13 n=5 Tax=Bombyx TaxID=7090 RepID=A0A6J2K5U4_BOMMA)

HSP 1 Score: 59.3 bits (142), Expect = 7.460e-8
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 1
Query:    1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRA--TEGKSSHLLLDRCTFKHK--ARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            RQ + LL ++    L+  E   C+VE  AGKG LS     A      SS LL+DR T +HK   RL        RA +A   +  VP         A + ++ +VG+ KH+CG+A D++LR +
Sbjct:  161 RQTSSLLWLVEEENLVDNE--TCYVELGAGKGQLSFYAHAAWCAGAGSSVLLVDRATLRHKRDGRLRGRGAARLRAELAHLALHRVP---------AAATARRLVGLAKHLCGVATDYALRCM 272          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A835L6Y2_SPOEX (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835L6Y2_SPOEX)

HSP 1 Score: 59.3 bits (142), Expect = 7.590e-8
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:    1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRATEGKSSHL-LLDRCTFKHKARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            RQ++ LL +    GL+G +   C+VE  AGKG +S    +A   +   L LLDR   +HK      A    RA +    +  VP          V+ S+ ++G+ KH+CG+A D++LR +
Sbjct:  160 RQVSALLHLAEEEGLVGGD--TCYVELGAGKGHMSYYAWQAWGAQGGALVLLDRAALRHKRDNKLRAARRLRADLRHVRLARVP---------RVANSRALLGLAKHLCGVATDYALRCV 268          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A653BIV6_CALMS (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=2 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653BIV6_CALMS)

HSP 1 Score: 54.7 bits (130), Expect = 3.100e-6
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   55 EEKVCFVEFRAGKGTLSLALQRAT--EGKSSHLLLDRCTFKHKARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            +   C++EF AG+G LS  L  A   E  SS LL++R + KHK + +K A         +A +  V     +D    V +SK IVGV KH+CG+A D +LR L
Sbjct:  180 QPSTCYIEFGAGRGQLSFWLAHAINLEETSSILLIERASPKHK-KDNKLARNSDSIKRIRADISDV----VLDKLDGVEKSKHIVGVTKHLCGVATDLALRCL 277          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A401SNN2_CHIPU (tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SNN2_CHIPU)

HSP 1 Score: 53.9 bits (128), Expect = 5.850e-6
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1
Query:    7 LTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLS----LALQRATEGKSSHLLLDRCTFKHKARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            L G LE M   GLLG     CFVEF AG+G LS    LAL+ A    +  LL++R T + K         ++R SV +   + +   +   V   V +   +VG+GKH+CG+A D +LR L
Sbjct:  171 LAGNLERM---GLLGSNR--CFVEFGAGRGKLSHWIDLALRDAEN--TYFLLVERATTRFKV----DGKHKNRGSVFERLQVDIKDLSLGQVPLLVRKRLPVVGIGKHLCGVATDLALRCL 280          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A813GK32_POLGL (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GK32_POLGL)

HSP 1 Score: 52.4 bits (124), Expect = 2.050e-5
Identity = 47/144 (32.64%), Postives = 66/144 (45.83%), Query Frame = 1
Query:    4 QLTGLLEMMRTRGLLG---------QEEKVCFVEFRAGKGTLSLALQRATEGKSSHLLLDRCTFKHKARLDKSAGMEHRASVAQ-AGVLSVPSNNTVDV----------------GRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            QL  ++  M  RGLL          QE+    +EF AG+G L+LALQ    G    L+  R   K   R  ++AG+ H  ++AQ     S  S  T+D+                GRAV   + ++ V KH+CG A D +LR L
Sbjct:  204 QLASIVGNMERRGLLKPSITGDGRLQEDAKVILEFGAGRGMLTLALQAVLTGALGILVERRIVSKRSDRALRAAGLAHGLNLAQDLSSKSSFSRLTIDIRDLDLSRAIASFGVSPGRAVG--RPVLAVSKHLCGAATDLALRCL 345          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: UPI001D082E72 (tRNA:m(4)X modification enzyme TRM13 homolog n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D082E72)

HSP 1 Score: 52.0 bits (123), Expect = 2.700e-5
Identity = 34/102 (33.33%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   70 FVEFRAGKGTLSLALQRATEGKS--SHLLLDRCTFKHKA----RLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            F+EF AGKG LS  L ++TE  S  S +L+D+ + +HK     +++  +  E R    +  +L +  +  +DV   + +SK ++G+ KH+CG+A D+++R L
Sbjct:  176 FIEFGAGKGKLSFWLAKSTENISDTSIVLVDKASHRHKMDNKLKIENCSAQE-RIHRIRGDILDLDLSQ-IDV---IRKSKHVIGLTKHLCGVATDYAMRCL 272          
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A2W1BPQ1_HELAM (tRNA:m(4)X modification enzyme TRM13 n=5 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BPQ1_HELAM)

HSP 1 Score: 50.8 bits (120), Expect = 6.650e-5
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query:    1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRATEGKSSHLLLDRCTFKHKARLDKSAG--MEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
            RQ++ LL +    GL+  +   C+VE  AGKG +S     A    +  LL+DR + +HK R +K AG     RA +A   +  VP              + +VG+ KH+CG+A D++LR +
Sbjct:  120 RQVSSLLWLTEQEGLVADD--TCYVELGAGKGHMSYYACGAWRRPA--LLVDRASLRHK-RDNKLAGGAARIRADLAHLALDRVP---------LAPACRALVGLAKHLCGVATDYALRCM 226          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI00067DA23E5.400e-1137.80tRNA:m(4)X modification enzyme TRM13 homolog isofo... [more]
A0A7E5W7R0_TRINI1.150e-834.68tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Trich... [more]
A0A6J2K5U4_BOMMA7.460e-834.96tRNA:m(4)X modification enzyme TRM13 n=5 Tax=Bomby... [more]
A0A835L6Y2_SPOEX7.590e-832.50tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Spodo... [more]
A0A653BIV6_CALMS3.100e-638.83tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
A0A401SNN2_CHIPU5.850e-637.19tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Orect... [more]
A0A813GK32_POLGL2.050e-532.64tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Polar... [more]
UPI001D082E722.700e-533.33tRNA:m(4)X modification enzyme TRM13 homolog n=1 T... [more]
A0A2W1BPQ1_HELAM6.650e-533.06tRNA:m(4)X modification enzyme TRM13 n=5 Tax=Helic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111911contigM-pyrifera_M_contig111911:3..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.2
Seed ortholog evalue9.1e-08
Seed eggNOG ortholog36080.S2J291
Preferred nameTRM13
KEGG koko:K15446
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.U11-48K-like CHHC zinc finger
EggNOG OGs1GSAJ@112252,38J7P@33154,3NXUV@4751,KOG2811@1,KOG2811@2759
EC2.1.1.225
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size357
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111911.2488.1prot_M-pyrifera_M_contig111911.2488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111911 3..449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.4710371-CDS-M-pyrifera_M_contig111911:2..1061622815632.4710371-CDS-M-pyrifera_M_contig111911:2..106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111911 3..106 -
1692277496.6997516-CDS-M-pyrifera_M_contig111911:2..1061692277496.6997516-CDS-M-pyrifera_M_contig111911:2..106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111911 3..106 -
1622815632.4847586-CDS-M-pyrifera_M_contig111911:220..4491622815632.4847586-CDS-M-pyrifera_M_contig111911:220..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111911 221..449 -
1692277496.7135725-CDS-M-pyrifera_M_contig111911:220..4491692277496.7135725-CDS-M-pyrifera_M_contig111911:220..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111911 221..449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.4974-UTR-M-pyrifera_M_contig111911:449..4731622815632.4974-UTR-M-pyrifera_M_contig111911:449..473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111911 450..473 -
1692277496.7236414-UTR-M-pyrifera_M_contig111911:449..4731692277496.7236414-UTR-M-pyrifera_M_contig111911:449..473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111911 450..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111911.2488.1

>prot_M-pyrifera_M_contig111911.2488.1 ID=prot_M-pyrifera_M_contig111911.2488.1|Name=mRNA_M-pyrifera_M_contig111911.2488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRATEGKSSHLLLDRCTFKH
KARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVC
GIALDHSLRAL
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mRNA from alignment at M-pyrifera_M_contig111911:3..473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111911.2488.1 ID=mRNA_M-pyrifera_M_contig111911.2488.1|Name=mRNA_M-pyrifera_M_contig111911.2488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig111911:3..473- (Macrocystis pyrifera P11B4 male)
CGCCAGCTTACAGGCTTGCTGGAGATGATGAGGACGAGGGGACTGCTAGG ACAAGAAGAAAAGGTGTGCTTTGTCGAGTTTCGCGCTGGAAAGGGTACTC TTTCTCTCGCGCTGCAGAGAGCCACCGAGGGCAAGAGCTCCCACCTCCTG CTCGACAGGTGCACCTTCAAGCACAAGGCAAGGCTGGACAAGTCGGCTGG CATGGAGCACAGGGCCTCTGTCGCCCAGGCGGGAGTGCTCTCCGTGCCGT CGAGTGCTATAGGATGCCATCTCCTGCCTGAAGTGCATAGAGTGACAGCG AGCATCGAGAGCCTGCTGCTGGCCGGCTTTCCGCCCTTCTCTGCCGTATC AGTGCAAAGGAAGATAGACAACACTGTCGATGTTGGCAGAGCTGTGTCTG AGAGCAAAGGGATCGTTGGCGTGGGCAAGCACGTGTGTGGCATTGCTCTG GACCACTCCCTTAGAGCACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111911:3..473-

>mRNA_M-pyrifera_M_contig111911.2488.1 ID=mRNA_M-pyrifera_M_contig111911.2488.1|Name=mRNA_M-pyrifera_M_contig111911.2488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig111911:3..473- (Macrocystis pyrifera P11B4 male)
ATGATGAGGACGAGGGGACTGCTAGGACAAGAAGAAAAGGTGTGCTTTGT
CGAGTTTCGCGCTGGAAAGGGTACTCTTTCTCTCGCGCTGCAGAGAGCCA
CCGAGGGCAAGAGCTCCCACCTCCTGCTCGACAGGTGCACCTTCAAGCAC
AAGGCAAGGCTGGACAAGTCGGCTGGCATGGAGCACAGGGCCTCTGTCGC
CCAGGCGGGAGTGCTCTCCGTGCCGTCGAATGATGAGGACGAGGGGACTG
CTAGGACAAGAAGAAAAGGTGTGCTTTGTCGAGTTTCGCGCTGGAAAGGG
TACTCTTTCTCTCGCGCTGCAGAGAGCCACCGAGGGCAAGAGCTCCCACC
TCCTGCTCGACAGGTGCACCTTCAAGCACAAGGCAAGGCTGGACAAGTCG
GCTGGCATGGAGCACAGGGCCTCTGTCGCCCAGGCGGGAGTGCTCTCCGT
GCCGTCGAACAACACTGTCGATGTTGGCAGAGCTGTGTCTGAGAGCAAAG
GGATCGTTGGCGTGGGCAAGCACGTGTGTGGCATTGCTCTGGACCACTCC
CTTAGAGCACTGACAACACTGTCGATGTTGGCAGAGCTGTGTCTGAGAGC
AAAGGGATCGTTGGCGTGGGCAAGCACGTGTGTGGCATTGCTCTGGACCA
CTCCCTTAGAGCACTG
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