mRNA_M-pyrifera_M_contig111911.2488.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: UPI00067DA23E (tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 n=2 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067DA23E) HSP 1 Score: 68.2 bits (165), Expect = 5.400e-11 Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 1
Query: 1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRA----TEGKSSHLLLDRCTFKHKA----RLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
RQ + LL +M GL+ ++ C+VE AGKG +S L RA E S+ LL+DR +HK R D+ A + RA +A + VP V ES+ +VG+ KH+CG+A DH+LR +
Sbjct: 159 RQTSSLLHVMEQAGLV--QDHTCYVELGAGKGIVSYYLWRAWCSAPESTSAALLVDRAALRHKRDNKLRGDRIARL--RADLADLALEKVP---------IVKESQSVVGLAKHLCGVATDHALRCV 272
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A7E5W7R0_TRINI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5W7R0_TRINI) HSP 1 Score: 61.6 bits (148), Expect = 1.150e-8 Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1
Query: 1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRA---TEGKSSHLLLDRCTFKHKA--RLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
RQ++ LL ++ GL+ E C+VE AGKG LS A G S+ LL+DR + +HK +L A + RA +A + VP V+ + +VG+ KH+CG+A D++LR +
Sbjct: 168 RQVSSLLWLVEDEGLVS--ENTCYVELGAGKGHLSYYACNAWCEEGGASAALLVDRASLRHKRDNKLRGRAALRLRADLAHLALERVP---------RVAACRALVGLAKHLCGVATDYALRCI 280
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A6J2K5U4_BOMMA (tRNA:m(4)X modification enzyme TRM13 n=5 Tax=Bombyx TaxID=7090 RepID=A0A6J2K5U4_BOMMA) HSP 1 Score: 59.3 bits (142), Expect = 7.460e-8 Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRA--TEGKSSHLLLDRCTFKHK--ARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
RQ + LL ++ L+ E C+VE AGKG LS A SS LL+DR T +HK RL RA +A + VP A + ++ +VG+ KH+CG+A D++LR +
Sbjct: 161 RQTSSLLWLVEEENLVDNE--TCYVELGAGKGQLSFYAHAAWCAGAGSSVLLVDRATLRHKRDGRLRGRGAARLRAELAHLALHRVP---------AAATARRLVGLAKHLCGVATDYALRCM 272
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A835L6Y2_SPOEX (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835L6Y2_SPOEX) HSP 1 Score: 59.3 bits (142), Expect = 7.590e-8 Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query: 1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRATEGKSSHL-LLDRCTFKHKARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
RQ++ LL + GL+G + C+VE AGKG +S +A + L LLDR +HK A RA + + VP V+ S+ ++G+ KH+CG+A D++LR +
Sbjct: 160 RQVSALLHLAEEEGLVGGD--TCYVELGAGKGHMSYYAWQAWGAQGGALVLLDRAALRHKRDNKLRAARRLRADLRHVRLARVP---------RVANSRALLGLAKHLCGVATDYALRCV 268
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A653BIV6_CALMS (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=2 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653BIV6_CALMS) HSP 1 Score: 54.7 bits (130), Expect = 3.100e-6 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 55 EEKVCFVEFRAGKGTLSLALQRAT--EGKSSHLLLDRCTFKHKARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
+ C++EF AG+G LS L A E SS LL++R + KHK + +K A +A + V +D V +SK IVGV KH+CG+A D +LR L
Sbjct: 180 QPSTCYIEFGAGRGQLSFWLAHAINLEETSSILLIERASPKHK-KDNKLARNSDSIKRIRADISDV----VLDKLDGVEKSKHIVGVTKHLCGVATDLALRCL 277
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A401SNN2_CHIPU (tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SNN2_CHIPU) HSP 1 Score: 53.9 bits (128), Expect = 5.850e-6 Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 7 LTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLS----LALQRATEGKSSHLLLDRCTFKHKARLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
L G LE M GLLG CFVEF AG+G LS LAL+ A + LL++R T + K ++R SV + + + + V V + +VG+GKH+CG+A D +LR L
Sbjct: 171 LAGNLERM---GLLGSNR--CFVEFGAGRGKLSHWIDLALRDAEN--TYFLLVERATTRFKV----DGKHKNRGSVFERLQVDIKDLSLGQVPLLVRKRLPVVGIGKHLCGVATDLALRCL 280
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A813GK32_POLGL (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GK32_POLGL) HSP 1 Score: 52.4 bits (124), Expect = 2.050e-5 Identity = 47/144 (32.64%), Postives = 66/144 (45.83%), Query Frame = 1
Query: 4 QLTGLLEMMRTRGLLG---------QEEKVCFVEFRAGKGTLSLALQRATEGKSSHLLLDRCTFKHKARLDKSAGMEHRASVAQ-AGVLSVPSNNTVDV----------------GRAVSESKGIVGVGKHVCGIALDHSLRAL 357
QL ++ M RGLL QE+ +EF AG+G L+LALQ G L+ R K R ++AG+ H ++AQ S S T+D+ GRAV + ++ V KH+CG A D +LR L
Sbjct: 204 QLASIVGNMERRGLLKPSITGDGRLQEDAKVILEFGAGRGMLTLALQAVLTGALGILVERRIVSKRSDRALRAAGLAHGLNLAQDLSSKSSFSRLTIDIRDLDLSRAIASFGVSPGRAVG--RPVLAVSKHLCGAATDLALRCL 345
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: UPI001D082E72 (tRNA:m(4)X modification enzyme TRM13 homolog n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D082E72) HSP 1 Score: 52.0 bits (123), Expect = 2.700e-5 Identity = 34/102 (33.33%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 70 FVEFRAGKGTLSLALQRATEGKS--SHLLLDRCTFKHKA----RLDKSAGMEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
F+EF AGKG LS L ++TE S S +L+D+ + +HK +++ + E R + +L + + +DV + +SK ++G+ KH+CG+A D+++R L
Sbjct: 176 FIEFGAGKGKLSFWLAKSTENISDTSIVLVDKASHRHKMDNKLKIENCSAQE-RIHRIRGDILDLDLSQ-IDV---IRKSKHVIGLTKHLCGVATDYAMRCL 272
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Match: A0A2W1BPQ1_HELAM (tRNA:m(4)X modification enzyme TRM13 n=5 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BPQ1_HELAM) HSP 1 Score: 50.8 bits (120), Expect = 6.650e-5 Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query: 1 RQLTGLLEMMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRATEGKSSHLLLDRCTFKHKARLDKSAG--MEHRASVAQAGVLSVPSNNTVDVGRAVSESKGIVGVGKHVCGIALDHSLRAL 357
RQ++ LL + GL+ + C+VE AGKG +S A + LL+DR + +HK R +K AG RA +A + VP + +VG+ KH+CG+A D++LR +
Sbjct: 120 RQVSSLLWLTEQEGLVADD--TCYVELGAGKGHMSYYACGAWRRPA--LLVDRASLRHK-RDNKLAGGAARIRADLAHLALDRVP---------LAPACRALVGLAKHLCGVATDYALRCM 226 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111911.2488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig111911.2488.1 >prot_M-pyrifera_M_contig111911.2488.1 ID=prot_M-pyrifera_M_contig111911.2488.1|Name=mRNA_M-pyrifera_M_contig111911.2488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp MMRTRGLLGQEEKVCFVEFRAGKGTLSLALQRATEGKSSHLLLDRCTFKHback to top mRNA from alignment at M-pyrifera_M_contig111911:3..473- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig111911.2488.1 ID=mRNA_M-pyrifera_M_contig111911.2488.1|Name=mRNA_M-pyrifera_M_contig111911.2488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig111911:3..473- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig111911:3..473- >mRNA_M-pyrifera_M_contig111911.2488.1 ID=mRNA_M-pyrifera_M_contig111911.2488.1|Name=mRNA_M-pyrifera_M_contig111911.2488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig111911:3..473- (Macrocystis pyrifera P11B4 male)back to top |