mRNA_M-pyrifera_M_contig111835.2475.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A351EV40_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EV40_9ACTN) HSP 1 Score: 135 bits (340), Expect = 3.270e-37 Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 1
Query: 1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALLYELS 312
GLT+W++L A L +T IP+VEELVYRGL+WSALEKRGMHP AIL TSA+FA+ HLEP+R +LFVLG+AIG GR+ TGRI ASI H+ +N+L MIA L +L+
Sbjct: 171 GLTVWLYLFAILGATFIPVVEELVYRGLFWSALEKRGMHPWAILIATSALFAMIHLEPVRTPVLFVLGMAIGAGRLRTGRIGASIATHILINSLAMIATLVDLA 274
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A7X5WSR4_9ACTN (CPBP family intramembrane metalloprotease n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WSR4_9ACTN) HSP 1 Score: 129 bits (323), Expect = 3.720e-36 Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 1
Query: 1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALLYELS 312
G+TIWI +A LAST++P+VEELVYRGLWWS+LEKRG+ V + +TS +FAV H EPIR+ ILFVLG+A+G GR T RI A IVAHM +N LGM LL EL+
Sbjct: 42 GITIWIVALAVLASTVVPVVEELVYRGLWWSSLEKRGVGEVGTILITSTVFAVVHFEPIRLPILFVLGLALGFGRTRTRRIGAPIVAHMVINGLGMAFLLVELA 145
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A3C0HNZ0_9ACTN (Uncharacterized protein n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HNZ0_9ACTN) HSP 1 Score: 125 bits (315), Expect = 2.330e-33 Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query: 1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
GLTIWI VA A+T +P++EELVYRGLWWSAL KRGM +L +TSA FA AH EP R +LF LGIA+G+GR+LTGRI ASI+ H +N LGM+ALL
Sbjct: 183 GLTIWIVFVAVFAATAVPVIEELVYRGLWWSALLKRGMSEWWVLLITSAAFAAAHFEPGRFPVLFTLGIALGMGRLLTGRIGASIITHALINGLGMVALL 282
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A3M2H131_ACTSX (CPBP family intramembrane metalloprotease (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H131_ACTSX) HSP 1 Score: 116 bits (291), Expect = 3.530e-30 Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIAL 297
G+ W+ L+A LA TL+P+VEELVYRGLWWSAL KRGM +L +TSA+FA+ H EP+R+ ILF LG+ +G GR+ TGR+A SIVAH VN MIAL
Sbjct: 142 GINAWLILLAVLAVTLVPVVEELVYRGLWWSALVKRGMDERWVLVVTSAVFALVHFEPVRVLILFSLGLVLGWGRLHTGRLAPSIVAHALVNAGAMIAL 240
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A7K1Z7D5_9ACTN (CPBP family intramembrane metalloprotease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z7D5_9ACTN) HSP 1 Score: 114 bits (286), Expect = 1.640e-29 Identity = 60/103 (58.25%), Postives = 78/103 (75.73%), Query Frame = 1
Query: 1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALLYEL 309
G++ WI L+A L + +IP++EE+VYRGL WSALEKRGM A+L L+S IFA HLEP R ILFVLGIA+G GR+ TGR+ + AH+ +N++GMIALL L
Sbjct: 134 GISGWIVLLAVLVALVIPVIEEIVYRGLLWSALEKRGMGETAVLVLSSLIFAAIHLEPARFPILFVLGIALGYGRIRTGRLGPCVTAHICLNSVGMIALLATL 236
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: UPI00037C570A (CPBP family intramembrane metalloprotease n=1 Tax=Actinopolymorpha alba TaxID=533267 RepID=UPI00037C570A) HSP 1 Score: 89.7 bits (221), Expect = 3.580e-20 Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 52 PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
P VEEL +RG+WWSAL ++G+ P LF+T+ +F+VAHLEP R A+LF G+A G RM+T R+ +I+ H+ VN + +I LL
Sbjct: 112 PFVEELHFRGMWWSALRRKGLGPWPTLFVTAILFSVAHLEPTRAALLFAAGLAAGFVRMVTDRLGPAIITHLVVNAIAVIGLL 194
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: UPI00196224BA (CPBP family glutamic-type intramembrane protease n=1 Tax=Tenggerimyces flavus TaxID=1708749 RepID=UPI00196224BA) HSP 1 Score: 87.8 bits (216), Expect = 5.260e-19 Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 40 STLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
+ L P VEEL +RG+WWSAL +RG+H L +T+ +FAV HLEP R+A+LF G+ +G RM T R+ +IV H+ +N + ++LL
Sbjct: 157 AVLAPFVEELHFRGMWWSALRRRGLHRWLTLLVTALLFAVVHLEPTRVALLFAAGLVLGFVRMQTDRLGPAIVVHLIMNAIAALSLL 243
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A7W7VHV5_9PSEU (Uncharacterized protein n=2 Tax=Actinophytocola algeriensis TaxID=1768010 RepID=A0A7W7VHV5_9PSEU) HSP 1 Score: 86.3 bits (212), Expect = 2.230e-18 Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 52 PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
P+ EE++YRGL W ALE+ A+ FLT+ IFAV+HLEP+R ++L V+GI IGL R+ TGR+ ASI+AH N L +A L
Sbjct: 160 PICEEIIYRGLLWGALERLKWGRWAVFFLTTIIFAVSHLEPLRTSLLLVIGIPIGLARLFTGRLGASIIAHQVNNFLPAVATL 242
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A2S6GGP4_9PSEU (Uncharacterized protein n=1 Tax=Actinokineospora auranticolor TaxID=155976 RepID=A0A2S6GGP4_9PSEU) HSP 1 Score: 85.5 bits (210), Expect = 4.750e-18 Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 52 PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
PL EE++YRGL W ALE+ A+ L++AIFAV+HLEP+R ++L V+GI IGL RM TGR+ ASIVAH N L +A+L
Sbjct: 166 PLFEEIIYRGLLWGALERLQWGRWAVFGLSTAIFAVSHLEPLRTSLLLVVGIPIGLARMFTGRLGASIVAHQVNNFLPALAVL 248
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A1V2P350_9PSEU (Uncharacterized protein n=2 Tax=Actinosynnema sp. ALI-1.44 TaxID=1933779 RepID=A0A1V2P350_9PSEU) HSP 1 Score: 85.5 bits (210), Expect = 4.830e-18 Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 1
Query: 25 VAFLASTLI-PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
V FL +TL+ PL EE+++RGL W ALE+ A+L L++A+FAV+HLEP+R ++L V+GI IGL R+ TGR+ ASI+AH N++ + +L
Sbjct: 156 VMFLYATLLGPLCEEIIFRGLLWGALERLQWGRWAVLALSTAVFAVSHLEPLRTSLLIVIGIPIGLARLFTGRLGASIIAHQVNNSVPALLVL 248 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig111835.2475.1 >prot_M-pyrifera_M_contig111835.2475.1 ID=prot_M-pyrifera_M_contig111835.2475.1|Name=mRNA_M-pyrifera_M_contig111835.2475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIback to top mRNA from alignment at M-pyrifera_M_contig111835:6..320+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig111835.2475.1 ID=mRNA_M-pyrifera_M_contig111835.2475.1|Name=mRNA_M-pyrifera_M_contig111835.2475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig111835:6..320+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig111835:6..320+ >mRNA_M-pyrifera_M_contig111835.2475.1 ID=mRNA_M-pyrifera_M_contig111835.2475.1|Name=mRNA_M-pyrifera_M_contig111835.2475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig111835:6..320+ (Macrocystis pyrifera P11B4 male)back to top |