mRNA_M-pyrifera_M_contig111835.2475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111835.2475.1
Unique NamemRNA_M-pyrifera_M_contig111835.2475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A351EV40_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EV40_9ACTN)

HSP 1 Score: 135 bits (340), Expect = 3.270e-37
Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALLYELS 312
            GLT+W++L A L +T IP+VEELVYRGL+WSALEKRGMHP AIL  TSA+FA+ HLEP+R  +LFVLG+AIG GR+ TGRI ASI  H+ +N+L MIA L +L+
Sbjct:  171 GLTVWLYLFAILGATFIPVVEELVYRGLFWSALEKRGMHPWAILIATSALFAMIHLEPVRTPVLFVLGMAIGAGRLRTGRIGASIATHILINSLAMIATLVDLA 274          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A7X5WSR4_9ACTN (CPBP family intramembrane metalloprotease n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WSR4_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 3.720e-36
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALLYELS 312
            G+TIWI  +A LAST++P+VEELVYRGLWWS+LEKRG+  V  + +TS +FAV H EPIR+ ILFVLG+A+G GR  T RI A IVAHM +N LGM  LL EL+
Sbjct:   42 GITIWIVALAVLASTVVPVVEELVYRGLWWSSLEKRGVGEVGTILITSTVFAVVHFEPIRLPILFVLGLALGFGRTRTRRIGAPIVAHMVINGLGMAFLLVELA 145          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A3C0HNZ0_9ACTN (Uncharacterized protein n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HNZ0_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 2.330e-33
Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
            GLTIWI  VA  A+T +P++EELVYRGLWWSAL KRGM    +L +TSA FA AH EP R  +LF LGIA+G+GR+LTGRI ASI+ H  +N LGM+ALL
Sbjct:  183 GLTIWIVFVAVFAATAVPVIEELVYRGLWWSALLKRGMSEWWVLLITSAAFAAAHFEPGRFPVLFTLGIALGMGRLLTGRIGASIITHALINGLGMVALL 282          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A3M2H131_ACTSX (CPBP family intramembrane metalloprotease (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H131_ACTSX)

HSP 1 Score: 116 bits (291), Expect = 3.530e-30
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIAL 297
            G+  W+ L+A LA TL+P+VEELVYRGLWWSAL KRGM    +L +TSA+FA+ H EP+R+ ILF LG+ +G GR+ TGR+A SIVAH  VN   MIAL
Sbjct:  142 GINAWLILLAVLAVTLVPVVEELVYRGLWWSALVKRGMDERWVLVVTSAVFALVHFEPVRVLILFSLGLVLGWGRLHTGRLAPSIVAHALVNAGAMIAL 240          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A7K1Z7D5_9ACTN (CPBP family intramembrane metalloprotease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z7D5_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 1.640e-29
Identity = 60/103 (58.25%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    1 GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALLYEL 309
            G++ WI L+A L + +IP++EE+VYRGL WSALEKRGM   A+L L+S IFA  HLEP R  ILFVLGIA+G GR+ TGR+   + AH+ +N++GMIALL  L
Sbjct:  134 GISGWIVLLAVLVALVIPVIEEIVYRGLLWSALEKRGMGETAVLVLSSLIFAAIHLEPARFPILFVLGIALGYGRIRTGRLGPCVTAHICLNSVGMIALLATL 236          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: UPI00037C570A (CPBP family intramembrane metalloprotease n=1 Tax=Actinopolymorpha alba TaxID=533267 RepID=UPI00037C570A)

HSP 1 Score: 89.7 bits (221), Expect = 3.580e-20
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   52 PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
            P VEEL +RG+WWSAL ++G+ P   LF+T+ +F+VAHLEP R A+LF  G+A G  RM+T R+  +I+ H+ VN + +I LL
Sbjct:  112 PFVEELHFRGMWWSALRRKGLGPWPTLFVTAILFSVAHLEPTRAALLFAAGLAAGFVRMVTDRLGPAIITHLVVNAIAVIGLL 194          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: UPI00196224BA (CPBP family glutamic-type intramembrane protease n=1 Tax=Tenggerimyces flavus TaxID=1708749 RepID=UPI00196224BA)

HSP 1 Score: 87.8 bits (216), Expect = 5.260e-19
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   40 STLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
            + L P VEEL +RG+WWSAL +RG+H    L +T+ +FAV HLEP R+A+LF  G+ +G  RM T R+  +IV H+ +N +  ++LL
Sbjct:  157 AVLAPFVEELHFRGMWWSALRRRGLHRWLTLLVTALLFAVVHLEPTRVALLFAAGLVLGFVRMQTDRLGPAIVVHLIMNAIAALSLL 243          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A7W7VHV5_9PSEU (Uncharacterized protein n=2 Tax=Actinophytocola algeriensis TaxID=1768010 RepID=A0A7W7VHV5_9PSEU)

HSP 1 Score: 86.3 bits (212), Expect = 2.230e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   52 PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
            P+ EE++YRGL W ALE+      A+ FLT+ IFAV+HLEP+R ++L V+GI IGL R+ TGR+ ASI+AH   N L  +A L
Sbjct:  160 PICEEIIYRGLLWGALERLKWGRWAVFFLTTIIFAVSHLEPLRTSLLLVIGIPIGLARLFTGRLGASIIAHQVNNFLPAVATL 242          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A2S6GGP4_9PSEU (Uncharacterized protein n=1 Tax=Actinokineospora auranticolor TaxID=155976 RepID=A0A2S6GGP4_9PSEU)

HSP 1 Score: 85.5 bits (210), Expect = 4.750e-18
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   52 PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
            PL EE++YRGL W ALE+      A+  L++AIFAV+HLEP+R ++L V+GI IGL RM TGR+ ASIVAH   N L  +A+L
Sbjct:  166 PLFEEIIYRGLLWGALERLQWGRWAVFGLSTAIFAVSHLEPLRTSLLLVVGIPIGLARMFTGRLGASIVAHQVNNFLPALAVL 248          
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Match: A0A1V2P350_9PSEU (Uncharacterized protein n=2 Tax=Actinosynnema sp. ALI-1.44 TaxID=1933779 RepID=A0A1V2P350_9PSEU)

HSP 1 Score: 85.5 bits (210), Expect = 4.830e-18
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   25 VAFLASTLI-PLVEELVYRGLWWSALEKRGMHPVAILFLTSAIFAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL 300
            V FL +TL+ PL EE+++RGL W ALE+      A+L L++A+FAV+HLEP+R ++L V+GI IGL R+ TGR+ ASI+AH   N++  + +L
Sbjct:  156 VMFLYATLLGPLCEEIIFRGLLWGALERLQWGRWAVLALSTAVFAVSHLEPLRTSLLIVIGIPIGLARLFTGRLGASIIAHQVNNSVPALLVL 248          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111835.2475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351EV40_9ACTN3.270e-3765.38Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X5WSR4_9ACTN3.720e-3663.46CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A0A3C0HNZ0_9ACTN2.330e-3364.00Uncharacterized protein n=7 Tax=Acidimicrobiaceae ... [more]
A0A3M2H131_ACTSX3.530e-3060.61CPBP family intramembrane metalloprotease (Fragmen... [more]
A0A7K1Z7D5_9ACTN1.640e-2958.25CPBP family intramembrane metalloprotease n=2 Tax=... [more]
UPI00037C570A3.580e-2050.60CPBP family intramembrane metalloprotease n=1 Tax=... [more]
UPI00196224BA5.260e-1947.13CPBP family glutamic-type intramembrane protease n... [more]
A0A7W7VHV5_9PSEU2.230e-1853.01Uncharacterized protein n=2 Tax=Actinophytocola al... [more]
A0A2S6GGP4_9PSEU4.750e-1855.42Uncharacterized protein n=1 Tax=Actinokineospora a... [more]
A0A1V2P350_9PSEU4.830e-1849.46Uncharacterized protein n=2 Tax=Actinosynnema sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111835contigM-pyrifera_M_contig111835:6..320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.7
Seed ortholog evalue8.6e-16
Seed eggNOG ortholog1120950.KB892739_gene3970
KEGG koko:K07052
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.metal-dependent membrane protease
EggNOG OGs2IFZI@201174,COG1266@1,COG1266@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.7244704-CDS-M-pyrifera_M_contig111835:5..3201622815631.7244704-CDS-M-pyrifera_M_contig111835:5..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111835 6..320 +
1692277496.3193653-CDS-M-pyrifera_M_contig111835:5..3201692277496.3193653-CDS-M-pyrifera_M_contig111835:5..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111835 6..320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111835.2475.1prot_M-pyrifera_M_contig111835.2475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111835 6..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111835.2475.1

>prot_M-pyrifera_M_contig111835.2475.1 ID=prot_M-pyrifera_M_contig111835.2475.1|Name=mRNA_M-pyrifera_M_contig111835.2475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
GLTIWIFLVAFLASTLIPLVEELVYRGLWWSALEKRGMHPVAILFLTSAI
FAVAHLEPIRIAILFVLGIAIGLGRMLTGRIAASIVAHMGVNTLGMIALL
YELS*
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mRNA from alignment at M-pyrifera_M_contig111835:6..320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111835.2475.1 ID=mRNA_M-pyrifera_M_contig111835.2475.1|Name=mRNA_M-pyrifera_M_contig111835.2475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig111835:6..320+ (Macrocystis pyrifera P11B4 male)
GGCCTCACGATCTGGATCTTCCTCGTGGCCTTCCTCGCCTCCACCCTCAT CCCACTCGTGGAAGAGCTCGTCTACCGAGGTCTGTGGTGGAGCGCACTGG AGAAACGAGGCATGCACCCTGTCGCGATCCTCTTCCTCACCAGCGCGATC TTCGCGGTCGCCCATCTCGAACCGATCCGGATCGCGATCCTGTTCGTGCT CGGCATCGCCATCGGTCTCGGCCGGATGCTCACCGGTCGGATCGCGGCCT CGATCGTCGCCCACATGGGCGTCAACACCCTCGGCATGATCGCCCTGCTC TACGAGCTGAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111835:6..320+

>mRNA_M-pyrifera_M_contig111835.2475.1 ID=mRNA_M-pyrifera_M_contig111835.2475.1|Name=mRNA_M-pyrifera_M_contig111835.2475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig111835:6..320+ (Macrocystis pyrifera P11B4 male)
GGCCTCACGATCTGGATCTTCCTCGTGGCCTTCCTCGCCTCCACCCTCAT
CCCACTCGTGGAAGAGCTCGTCTACCGAGGTCTGTGGTGGAGCGCACTGG
AGAAACGAGGCATGCACCCTGTCGCGATCCTCTTCCTCACCAGCGCGATC
TTCGCGGTCGCCCATCTCGAACCGATCCGGATCGCGATCCTGTTCGTGCT
CGGCATCGCCATCGGTCTCGGCCGGATGCTCACCGGTCGGATCGCGGCCT
CGATCGTCGCCCACATGGGCGTCAACACCCTCGGCATGATCGCCCTGCTC
TACGAGCTGAGCTGAGGCCTCACGATCTGGATCTTCCTCGTGGCCTTCCT
CGCCTCCACCCTCATCCCACTCGTGGAAGAGCTCGTCTACCGAGGTCTGT
GGTGGAGCGCACTGGAGAAACGAGGCATGCACCCTGTCGCGATCCTCTTC
CTCACCAGCGCGATCTTCGCGGTCGCCCATCTCGAACCGATCCGGATCGC
GATCCTGTTCGTGCTCGGCATCGCCATCGGTCTCGGCCGGATGCTCACCG
GTCGGATCGCGGCCTCGATCGTCGCCCACATGGGCGTCAACACCCTCGGC
ATGATCGCCCTGCTCTACGAGCTGAGCTGA
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