mRNA_M-pyrifera_M_contig111771.2459.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111771.2459.1
Unique NamemRNA_M-pyrifera_M_contig111771.2459.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A453T6E7_AEGTS (ANAPC4_WD40 domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453T6E7_AEGTS)

HSP 1 Score: 178 bits (452), Expect = 6.700e-50
Identity = 87/189 (46.03%), Postives = 120/189 (63.49%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EPIL+SS  DN++K+WIFD  +G ARLLR RS H  PPR  RFY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+L+V  E +KL   ++F  + +R RDW N+V+CH     AY+W  +   +       L  S   ESP+ A  +S CG F I+ TE GW+EKFN+QSG+ RGS
Sbjct:  277 FFANEPILMSSAADNSIKMWIFDNNEGDARLLRFRSGHSAPPRCIRFYGNGKSILSAGQDRAFRLFSVVQDQQSRELSQRHVAKRAKKLRVKEEEIKLKPVIAFDCAEIRARDWCNVVTCHMDTSKAYVWRLQNFVIGEHI---LTPSSETESPIKACTISACGNFTILGTEGGWIEKFNLQSGISRGS 462          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A251VMZ1_HELAN (Putative transducin family protein / WD-40 repeat family protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VMZ1_HELAN)

HSP 1 Score: 181 bits (460), Expect = 1.180e-49
Identity = 87/189 (46.03%), Postives = 123/189 (65.08%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EP+L+S+  DN++K+WIFD  DG  RLLR RS H  PP   +FY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+LKV  E +KL   ++F  + +RERDW+N+V+CH    HAY+W  +   L       L  +   ++PV A  +STCG+FAI+ T  GW+EKFN+QSGL RGS
Sbjct:  276 FFANEPVLMSTSADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVTKRAKKLKVKEEEIKLKPVIAFDVAEIRERDWSNVVTCHMDTPHAYVWRLQNFVLGEHI---LTPTTDIQAPVKACAISTCGSFAIIGTAAGWIEKFNLQSGLSRGS 461          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A0D6QUZ2_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6QUZ2_ARACU)

HSP 1 Score: 180 bits (457), Expect = 3.150e-49
Identity = 89/189 (47.09%), Postives = 121/189 (64.02%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EP+L+SS  DN++K+WIFD  DG ARLLR RS H  PP   R+Y   + +L+ G+DR  R F   QD+++ ELSQGH+ KR+K+LKV  E +KL   ++F A+ +RERDW N+V+CH  D  AY W  +   +       L  S    +PV A  +STCG FA++ TE GW+E+FN+QSG  RGS
Sbjct:  276 FFANEPVLMSSATDNSIKMWIFDTSDGEARLLRFRSGHSAPPTCIRYYGKGRHILSAGQDRAFRIFSVIQDQQSKELSQGHVAKRAKKLKVKEEEVKLPPVIAFDAAEIRERDWCNVVTCHLDDPCAYTWRLQNFVIGEHI---LRPSCEIPTPVKACSISTCGNFAVLGTEGGWIERFNLQSGYSRGS 461          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A2U1MKU8_ARTAN (Transducin family protein / WD-40 repeat family protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MKU8_ARTAN)

HSP 1 Score: 179 bits (455), Expect = 4.980e-49
Identity = 85/189 (44.97%), Postives = 122/189 (64.55%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EP+L+S+  DN++K+WIFD  DG  RLLR RS H  PP   RFY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+LK+  E +KL   ++F  + +RERDW+N+V+CH    HAY+W  +   L       L  S   ++PV A  +S+CG FA++ T  GW+EKFN+QSG+ RGS
Sbjct:  238 FFANEPVLMSTSADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVTKRAKKLKLKDEEIKLKPVIAFDVAEIRERDWSNVVTCHMDTPHAYVWRLQNFVLGEHI---LTPSADIQTPVKACTISSCGNFAVIGTAGGWIEKFNLQSGISRGS 423          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: UPI000D62D406 (U3 small nucleolar RNA-associated protein 21 homolog n=2 Tax=Asteraceae TaxID=4210 RepID=UPI000D62D406)

HSP 1 Score: 179 bits (455), Expect = 5.760e-49
Identity = 86/189 (45.50%), Postives = 122/189 (64.55%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EP+L+S+  DN++K+WIFD  DG  RLLR RS H  PP   RFY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+LK+  E +KL   ++F  + +RERDW+N+V+CH    HAY+W  +   L       L  S   ++PV A  +S+CG FAI+ T  GW+EKFN+QSG+ RGS
Sbjct:  276 FFANEPVLMSTSADNSIKMWIFDTSDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVTKRAKKLKLKEEEIKLKPVIAFDVAEIRERDWSNVVTCHMDTAHAYVWRLQNFVLGEHI---LTPSADVQTPVKACTISSCGNFAILGTAGGWIEKFNLQSGMSRGS 461          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A1U8A9M0_NELNU (WD repeat-containing protein 36 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A9M0_NELNU)

HSP 1 Score: 179 bits (453), Expect = 1.080e-48
Identity = 85/189 (44.97%), Postives = 122/189 (64.55%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EP+L+SS  DN++K+WIFD  DG ARLLR RS H  PP   RFY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+LKV  + +KL   ++F  + +RERDW N+V+CH     AY+W  +   +       L+     ++PV A  +S CG +A++ TE GW+E+FN+QSGLRRGS
Sbjct:  276 FFSNEPVLMSSSADNSIKMWIFDTSDGDARLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKRAKKLKVKEDEIKLKPVIAFDFAEIRERDWCNVVTCHMDTSQAYVWRLQNFVIGKHI---LIPCPENQTPVKACSISACGNYAVLGTESGWIERFNLQSGLRRGS 461          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A6I9QQU3_ELAGV (LOW QUALITY PROTEIN: WD repeat-containing protein 36 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QQU3_ELAGV)

HSP 1 Score: 178 bits (451), Expect = 2.020e-48
Identity = 88/189 (46.56%), Postives = 122/189 (64.55%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F+  EPIL+SS  DN++K+WIFD  DG ARLLR RS H  PPR  RFY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+L+   E +KL   ++F  + +RERDW N+V+CH     AY+W  +   L       L  S   ++PV A  +S CG FAI+ TE GW+E+FN+QSG+ RGS
Sbjct:  276 FLANEPILMSSAADNSIKMWIFDTTDGDARLLRFRSGHSAPPRCIRFYGNGRYILSAGQDRAFRLFSVIQDQQSRELSQRHVTKRAKKLRSKEEEIKLKPVIAFDFAEIRERDWCNVVTCHMDTPRAYVWRLQNFVLGEHI---LTPSTDNQTPVKACAISACGNFAILGTEGGWIERFNLQSGISRGS 461          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A5N6PUG8_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PUG8_9ASTR)

HSP 1 Score: 177 bits (450), Expect = 2.310e-48
Identity = 86/189 (45.50%), Postives = 121/189 (64.02%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EP+L+SS  DN++K+WIFD  DG  RLLR RS H  PP   RFY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+LK+  E +KL   ++F  + +RERDW N+V+CH    HAY+W  +   L       L  +   ++PV A  +S CG+FAI+ T  GW+EKFN+QSG+ RGS
Sbjct:  276 FFADEPVLMSSSADNSIKMWIFDTSDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVTKRAKKLKLKEEEIKLKPVIAFDVAEIRERDWANVVTCHMDTLHAYVWRLQNFVLGEHI---LTPTTDIQAPVKACTISACGSFAILGTAGGWIEKFNLQSGMSRGS 461          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: K3XV61_SETIT (Uncharacterized protein n=11 Tax=PACMAD clade TaxID=147370 RepID=K3XV61_SETIT)

HSP 1 Score: 177 bits (448), Expect = 5.170e-48
Identity = 87/189 (46.03%), Postives = 120/189 (63.49%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F   EPIL+SS  DN++K+WIFD  DG ARLLR RS H  PPR  RFY + + +L+ G+DR  R F   QD+++ ELSQ H+ KR+K+L+V  E +KL   ++F  + +R RDW N+V+CH     AY+W  +   +       L  S   E+P+ A  +S CG F I+ TE GW+EKFN+QSG+ RGS
Sbjct:  277 FFANEPILMSSAADNSIKMWIFDNNDGGARLLRFRSGHSAPPRCIRFYGNGKCILSAGQDRAFRLFSVVQDQQSRELSQRHVTKRAKKLRVKEEEIKLKPVITFDCAEIRARDWCNVVTCHMDTPRAYVWRLQNFVIGEHI---LTPSSGTETPIKACVISACGNFTILGTEGGWIEKFNLQSGISRGS 462          
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Match: A0A498IAD2_MALDO (Uncharacterized protein n=3 Tax=Maleae TaxID=721813 RepID=A0A498IAD2_MALDO)

HSP 1 Score: 177 bits (448), Expect = 5.380e-48
Identity = 87/189 (46.03%), Postives = 123/189 (65.08%), Query Frame = 1
Query:    1 FMPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSAQQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQCVSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPAESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS 567
            F+  EP+L+SS  DN++K+WIFD +DG  RLLR RS H  PPR  RFY + + +L+ G+DR  R F   QD+++ ELSQ HI KR+K+LK+  E +KL   +SF  + +RERDW N+V+CH     AY+W  +   L     L+    +P  +PV A  +S CG FA++ T  GW+E+FN+QSG+ RGS
Sbjct:  276 FLVNEPVLMSSSSDNSIKMWIFDTIDGDPRLLRFRSGHSAPPRCIRFYANGRHILSAGQDRAFRLFSVMQDQQSRELSQHHISKRAKKLKMKEEEIKLKPVISFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHI-LKPRPENP--TPVKACAISACGNFAVLGTADGWVERFNLQSGISRGS 461          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111771.2459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453T6E7_AEGTS6.700e-5046.03ANAPC4_WD40 domain-containing protein n=2 Tax=Aegi... [more]
A0A251VMZ1_HELAN1.180e-4946.03Putative transducin family protein / WD-40 repeat ... [more]
A0A0D6QUZ2_ARACU3.150e-4947.09Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]
A0A2U1MKU8_ARTAN4.980e-4944.97Transducin family protein / WD-40 repeat family pr... [more]
UPI000D62D4065.760e-4945.50U3 small nucleolar RNA-associated protein 21 homol... [more]
A0A1U8A9M0_NELNU1.080e-4844.97WD repeat-containing protein 36 n=1 Tax=Nelumbo nu... [more]
A0A6I9QQU3_ELAGV2.020e-4846.56LOW QUALITY PROTEIN: WD repeat-containing protein ... [more]
A0A5N6PUG8_9ASTR2.310e-4845.50Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
K3XV61_SETIT5.170e-4846.03Uncharacterized protein n=11 Tax=PACMAD clade TaxI... [more]
A0A498IAD2_MALDO5.380e-4846.03Uncharacterized protein n=3 Tax=Maleae TaxID=72181... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111771contigM-pyrifera_M_contig111771:23..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score181.0
Seed ortholog evalue5.1e-43
Seed eggNOG ortholog4432.XP_010263396.1
KEGG koko:K14554
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat-containing protein
EggNOG OGs37NED@33090,3GE6W@35493,KOG1539@1,KOG1539@2759
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size567
Cds size564
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.0457823-CDS-M-pyrifera_M_contig111771:22..5861622815631.0457823-CDS-M-pyrifera_M_contig111771:22..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111771 23..586 -
1692277496.0822802-CDS-M-pyrifera_M_contig111771:22..5861692277496.0822802-CDS-M-pyrifera_M_contig111771:22..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111771 23..586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.058478-UTR-M-pyrifera_M_contig111771:586..5891622815631.058478-UTR-M-pyrifera_M_contig111771:586..589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111771 587..589 -
1692277496.0940747-UTR-M-pyrifera_M_contig111771:586..5891692277496.0940747-UTR-M-pyrifera_M_contig111771:586..589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111771 587..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111771.2459.1prot_M-pyrifera_M_contig111771.2459.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111771 23..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111771.2459.1

>prot_M-pyrifera_M_contig111771.2459.1 ID=prot_M-pyrifera_M_contig111771.2459.1|Name=mRNA_M-pyrifera_M_contig111771.2459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
MPGEPILLSSGPDNTLKVWIFDKMDGSARLLRSRSAHYRPPRMARFYKSA
QQMLTVGEDRTMRAFFTFQDRRNCELSQGHIEKRSKQLKVAGETLKLTQC
VSFAASHVRERDWNNIVSCHRSDRHAYLWSFEKKALASKASLRLLTSDPA
ESPVTAVEMSTCGTFAIVATERGWLEKFNVQSGLRRGS
back to top

mRNA from alignment at M-pyrifera_M_contig111771:23..589-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111771.2459.1 ID=mRNA_M-pyrifera_M_contig111771.2459.1|Name=mRNA_M-pyrifera_M_contig111771.2459.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig111771:23..589- (Macrocystis pyrifera P11B4 male)
TTCATGCCCGGCGAGCCGATCCTCCTCTCGTCTGGCCCCGACAACACACT CAAGGTGTGGATCTTCGACAAGATGGACGGCAGCGCACGGCTGCTGCGGT CGAGGAGCGCCCACTACCGCCCTCCCCGCATGGCGAGGTTCTACAAGAGT GCCCAGCAGATGCTGACGGTGGGCGAGGACCGCACAATGCGGGCATTCTT CACCTTCCAGGATAGACGGAACTGCGAGCTCTCGCAGGGCCACATCGAGA AGCGCTCCAAGCAACTGAAGGTCGCCGGCGAGACTCTGAAGCTCACGCAG TGCGTGAGCTTCGCGGCGAGCCACGTGCGCGAGAGGGACTGGAACAACAT TGTCTCCTGCCACAGGAGCGACCGCCACGCCTATCTCTGGAGCTTTGAGA AGAAAGCCTTGGCCTCCAAGGCCTCTCTGCGACTGCTCACGAGCGATCCT GCGGAGTCGCCTGTGACTGCGGTGGAGATGAGCACCTGTGGCACTTTTGC GATCGTTGCGACAGAGAGAGGATGGCTAGAGAAGTTCAACGTTCAAAGCG GCCTCAGGAGAGGCTCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111771:23..589-

>mRNA_M-pyrifera_M_contig111771.2459.1 ID=mRNA_M-pyrifera_M_contig111771.2459.1|Name=mRNA_M-pyrifera_M_contig111771.2459.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig111771:23..589- (Macrocystis pyrifera P11B4 male)
ATGCCCGGCGAGCCGATCCTCCTCTCGTCTGGCCCCGACAACACACTCAA
GGTGTGGATCTTCGACAAGATGGACGGCAGCGCACGGCTGCTGCGGTCGA
GGAGCGCCCACTACCGCCCTCCCCGCATGGCGAGGTTCTACAAGAGTGCC
CAGCAGATGCTGACGGTGGGCGAGGACCGCACAATGCGGGCATTCTTCAC
CTTCCAGGATAGACGGAACTGCGAGCTCTCGCAGGGCCACATCGAGAAGC
GCTCCAAGCAACTGAAGGTCGCCGGCGAGACTCTGAAGCTCACGCAGTGC
GTGAGCTTCGCGGCGAGCCACGTGCGCGAGAGGGACTGGAACAACATTGT
CTCCTGCCACAGGAGCGACCGCCACGCCTATCTCTGGAGCTTTGAGAAGA
AAGCCTTGGCCTCCAAGGCCTCTCTGCGACTGCTCACGAGCGATCCTGCG
GAGTCGCCTGTGACTGCGGTGGAGATGAGCACCTGTGGCACTTTTGCGAT
CGTTGCGACAGAGAGAGGATGGCTAGAGAAGTTCAACGTTCAAAGCGGCC
TCAGGAGAGGCTCCATGCCCGGCGAGCCGATCCTCCTCTCGTCTGGCCCC
GACAACACACTCAAGGTGTGGATCTTCGACAAGATGGACGGCAGCGCACG
GCTGCTGCGGTCGAGGAGCGCCCACTACCGCCCTCCCCGCATGGCGAGGT
TCTACAAGAGTGCCCAGCAGATGCTGACGGTGGGCGAGGACCGCACAATG
CGGGCATTCTTCACCTTCCAGGATAGACGGAACTGCGAGCTCTCGCAGGG
CCACATCGAGAAGCGCTCCAAGCAACTGAAGGTCGCCGGCGAGACTCTGA
AGCTCACGCAGTGCGTGAGCTTCGCGGCGAGCCACGTGCGCGAGAGGGAC
TGGAACAACATTGTCTCCTGCCACAGGAGCGACCGCCACGCCTATCTCTG
GAGCTTTGAGAAGAAAGCCTTGGCCTCCAAGGCCTCTCTGCGACTGCTCA
CGAGCGATCCTGCGGAGTCGCCTGTGACTGCGGTGGAGATGAGCACCTGT
GGCACTTTTGCGATCGTTGCGACAGAGAGAGGATGGCTAGAGAAGTTCAA
CGTTCAAAGCGGCCTCAGGAGAGGCTCC
back to top