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Homology
BLAST of mRNA_M-pyrifera_M_contig1117.2446.1 vs. uniprot
Match: D7FM67_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM67_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.880e-61 Identity = 157/316 (49.68%), Postives = 187/316 (59.18%), Query Frame = 1
Query: 1 MESPRVSLSFVAVLISVLAHPTCVDGFFVPAPACRPTAAALGSRAMGTSALSSRPEAAPR---RMHEVWRRQASMSAR-----QPGDGAPTGRSQEGGGGSTSRLSRISMRVRKMIRKAVMGYLPEEEMSYKQTTAKAAAEAAALRDQYEVANPRLQADGLKAQGAAAEAVD----------NFEDEDDILGEG-FVRLNIGDQTPKEAEDAMMSLRKRLEQQLPPDTDKEQAEKRRIAMQNQQNQQKAKEGPLKPPRFDGDTAVAERPSPTDGARQS------PEVPRETPKLASAEDVERLNRMFGSMGGEPLR 873
M ++S+SF+AVLI+V VDGF P P T A + RAM T+ S R R E RRQASMSA PG G Q+GG RLSRIS RVRK+IR+AVMGYLPEEE+SYKQ + A AA LR + E+A+ RL+ + A+ AA EAV+ N +EDD L FV+LNIGD++P E ED + SLR RLEQ LPPDT +EQAEK +PP FDGDTAVAERPS ARQ+ P+ P+E PK+ASAEDVERLNRMFGSMGGEPLR
Sbjct: 1 MAPMKLSISFIAVLIAVFDG---VDGFVGPVPVG--TRARVVRRAMATNGFHSTTRVQGRSLPRAQEPLRRQASMSAAPDKMPSPGISGEEGAPQKGG-----RLSRISGRVRKIIRRAVMGYLPEEEVSYKQRAEEQEAAAAKLRGEPEIADERLRDASIAAKAAAIEAVEESFVQGSFTGNEGEEDDWLANNDFVQLNIGDESPMEIEDKLASLRNRLEQGLPPDTAQEQAEKXXXXXXXXXXXXXX----XRPPSFDGDTAVAERPSSNLDARQANEGGMRPQAPKEAPKMASAEDVERLNRMFGSMGGEPLR 302
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_004880.1 |
| Exons | 6 |
| Model size | 876 |
| Cds size | 876 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815630.2132494-CDS-M-pyrifera_M_contig1117:11155..11406 | 1622815630.2132494-CDS-M-pyrifera_M_contig1117:11155..11406 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 11156..11406 + |
| 1692277495.637731-CDS-M-pyrifera_M_contig1117:11155..11406 | 1692277495.637731-CDS-M-pyrifera_M_contig1117:11155..11406 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 11156..11406 + |
| 1622815630.22597-CDS-M-pyrifera_M_contig1117:12412..12587 | 1622815630.22597-CDS-M-pyrifera_M_contig1117:12412..12587 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 12413..12587 + |
| 1692277495.650156-CDS-M-pyrifera_M_contig1117:12412..12587 | 1692277495.650156-CDS-M-pyrifera_M_contig1117:12412..12587 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 12413..12587 + |
| 1622815630.2364485-CDS-M-pyrifera_M_contig1117:13478..13616 | 1622815630.2364485-CDS-M-pyrifera_M_contig1117:13478..13616 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 13479..13616 + |
| 1692277495.6642141-CDS-M-pyrifera_M_contig1117:13478..13616 | 1692277495.6642141-CDS-M-pyrifera_M_contig1117:13478..13616 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 13479..13616 + |
| 1622815630.2515354-CDS-M-pyrifera_M_contig1117:14550..14702 | 1622815630.2515354-CDS-M-pyrifera_M_contig1117:14550..14702 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 14551..14702 + |
| 1692277495.6740813-CDS-M-pyrifera_M_contig1117:14550..14702 | 1692277495.6740813-CDS-M-pyrifera_M_contig1117:14550..14702 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 14551..14702 + |
| 1622815630.2638285-CDS-M-pyrifera_M_contig1117:15357..15426 | 1622815630.2638285-CDS-M-pyrifera_M_contig1117:15357..15426 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 15358..15426 + |
| 1692277495.6856942-CDS-M-pyrifera_M_contig1117:15357..15426 | 1692277495.6856942-CDS-M-pyrifera_M_contig1117:15357..15426 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 15358..15426 + |
| 1622815630.2778814-CDS-M-pyrifera_M_contig1117:16615..16706 | 1622815630.2778814-CDS-M-pyrifera_M_contig1117:16615..16706 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 16616..16706 + |
| 1692277495.7005029-CDS-M-pyrifera_M_contig1117:16615..16706 | 1692277495.7005029-CDS-M-pyrifera_M_contig1117:16615..16706 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1117 16616..16706 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1117.2446.1 >prot_M-pyrifera_M_contig1117.2446.1 ID=prot_M-pyrifera_M_contig1117.2446.1|Name=mRNA_M-pyrifera_M_contig1117.2446.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=292bp
MESPRVSLSFVAVLISVLAHPTCVDGFFVPAPACRPTAAALGSRAMGTSA LSSRPEAAPRRMHEVWRRQASMSARQPGDGAPTGRSQEGGGGSTSRLSRI SMRVRKMIRKAVMGYLPEEEMSYKQTTAKAAAEAAALRDQYEVANPRLQA DGLKAQGAAAEAVDNFEDEDDILGEGFVRLNIGDQTPKEAEDAMMSLRKR LEQQLPPDTDKEQAEKRRIAMQNQQNQQKAKEGPLKPPRFDGDTAVAERP SPTDGARQSPEVPRETPKLASAEDVERLNRMFGSMGGEPLR* back to topmRNA from alignment at M-pyrifera_M_contig1117:11156..16706+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig1117.2446.1 ID=mRNA_M-pyrifera_M_contig1117.2446.1|Name=mRNA_M-pyrifera_M_contig1117.2446.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5551bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:11156..16706+ (Macrocystis pyrifera P11B4 male) ATGGAGTCGCCAAGGGTATCTCTTTCCTTTGTCGCCGTTCTAATCAGCGT
GTTGGCGCATCCGACATGTGTGGATGGCTTCTTCGTCCCGGCTCCTGCTT
GCAGACCAACCGCTGCTGCACTGGGAAGCCGAGCTATGGGAACCAGCGCC
CTCTCCAGCAGACCCGAAGCTGCACCACGGCGAATGCACGAGGTGTGGAG
GCGGCAAGCTTCTATGTCGGCCCGCCAGCCAGGAGATGGGGCACCGACGG
GGTGAGTAGTGATTGCATGACTATGGCCCCCATCATACATGCTCTCGTTT
CTCCACCGGACTACTGATGATCCTCATTTCGTGTTTCGCCACCACCCCGG
GTACAGCTTGTAGGGTGATGAATAACCGCCCCCCGACAAACGGTCGGGGC
TGCTCCCCCCTTCCCGTTATGGGTAGTCCGTTGTGGGTCGTCTACTACTT
CTGCTCTTCGGTGGTACGTCAGCGTATCGTTGAGTGGTAGGCATGCTAGT
GCCCTCCTATTATGCAGCAGTCGTACTTGTGTGTACCTAAATCCATCTCG
AACTTCAATTTCATGATTTTCGTCAACAGACATTGTTGTAAAAACAGCCA
CGTGCCCTCCTCCCAGAGAGAACGCGAAAGAGCTGCAGCTGGATCCCGCC
CCGAGTGCTCGCAGTCCCCAGACGGGGTGGGGTGGTGACTCGTGACGGTA
CTTGCCTTATCGAGCGATGCTGGGTTGGTTGAGTCCTGCCGCCCATGTCG
TGTACACATCAAACCTTGCTTTGCAAGTTTCCCAAGCCATGAACGGTTGC
CACGTTTCCACGTCGAAACGCATTTTCCCTGCCCACAGAAAATACGAAAA
TACACAGGGTATGTACGTACAAACAGAGTCAGTGCAGCACCGCTCTATTT
TCTCTGTTCTTCATCGCCACATAATAAAACGCCACGTACTCGTACGACTC
TAACTCTCTCTACTGGAGTCTCGAAGCTCGTCCTTGCTGTACCGTCAGCC
ATGCGTCAACACGATTAATAGCTAGTCAACACGTACACGCTGGGATTTTC
TATTCCTACGGGTTTTTCTAGGCAGTTTACTGCTGTACCAGGTACGAGTG
AGCCTTCCTGTTGCATCCCACCAGGTATCCAGTATGATCCCAATTCCAAA
AATCCTAAAGTGTATGAACGTCAATCGCCACCTCGTCATCTCGTGAACCA
TTTTGATGTTCCCCTTCAAACTTGAAACGGTCTTCGTACTACTGCTGTGA
AACGAAGCAGATCTCAAGAGGGGGGGGGCGGATCGACGTCGCGACTGTCG
CGCATCTCTATGCGCGTGAGGAAGATGATTCGGAAGGCCGTCATGGGCTA
CCTCCCGGAAGAGGAGATGTCGTACAAGCAGACAACAGCCAAGGCCGCAG
CCGAGGCGGCGGCTTTGCGCGATCAGTACGAGGTACGAGCAGTGCGATCT
TGTGATCTGAGATTGTACCGCTTTCTGCCCGGAAATGAAACATTTTATAC
TGACGTACGTCGGGCACCGGTACGTGTACACGTGTATATGCACGACCAAC
GACCAGAGCACGACCAAACGGTTACGGGCTACGGGTAGATCTGTCTCTGC
AACTCTGCGAACCTGCGAACCCAGCCCAGACTTTTTGGTGCAGCAAAGGA
TACAGATACCAGGTACCAGGTATTATGTGTACGGTACTCGTATACCAGGT
ACCAGGTACCACGGTACTTATTTAGAGCCTGGTTTGTACATAGGTATACA
GCAGTACTACAGTTCGTAGTATTTAATAGTAGCTGGTAGTTGAGTACGAC
GGTACACGTTGGAGCATACGTACAACTTATTTGTTTACACCATTCTGCTG
TAATGTCGAAGGCCAACTGTAACCTATAATACACGCTACGTACTACTCCA
GCACGGCGGCGTAAGGTGTGCCAGAGGCCAGAGCGGGGTGCGCCCGCCGC
TCGCCACCGCCGCACATCTCGCGCGAGCTACGCAGGTTGAGCTACCGTGC
GCACTATTTTAGTATCAAAGTCGTGTTATATTTACTTTGGCCGCTTGAAT
GAGCACGATATATATGTTGCACGGTTTACTTTTACGAAGAGATCCATATC
CGTTGTATTAGTAGTACTGCAGTAGAAGAGGCTAAAGGTCTACCGCCGTC
GCCTTGCCGACCCCTGGCTAGGGAGACAGAATCCTAGAAAACTCCTTTTT
TTTTACCGACTTTTGGTACTGCTACTGTTTCGTATGTACGCCGATTGGCT
ACCCCCCCTTTGCCGTTTCGTCCCGTTTAAACTGCCGCTGCTGTTGGATT
TTTCTTGGGTGTTTGCCGTGAAGGTTGCCAACCCGCGGCTGCAGGCAGAC
GGTCTCAAGGCACAGGGAGCGGCAGCTGAAGCGGTCGACAACTTTGAAGA
TGAGGACGATATTCTAGGCGAGGGCTTCGTGCGGCTCAACATCGGAGACC
AAACCCCAAAGGTACATACGAACGCGGCGCGGTTACAGCTTTTAGTTGTT
CGGCACTTGACAACGAAATTGTAACGACAAATAAAAAATACCATTCCAGC
ATCGGTATCGGCCACTGCTTGGTTGGTTTTGGGGGATGATCATTTTGGCG
TCCGAGCGACGACGCACAGGAGAATTAGGACGACACGGGCGGGCGCAGAC
AGTAGACATCAGACGAAACTTCATAAAAAAAGCGGTAAATCAATGTGGCT
TAAAAGGCGTACCAGGTACTTCGTAGCAGTGGTTAACCCTCTTGGAACTT
TATAAAGGGGAAAAGTTTTCGATAAAAATTGACGATAGCGGCGACGGCCA
GTGCGTCTTTGGGAGATGAGACAGGCTTTTGTCCGAGCTACTTGTGTAAC
GATGCAAGAAAGTCGTACGGTACGCGCAACATGATCGTCCCCGTACATAC
TGCTGGGCGCTCACTCTGCTCGTATTGGATACGATTGATAGTATCAAAGT
TACCATTGTCTTGGTCGCAGTCTCGGGGTCCCAAGGTTAAGACTCGGCCT
ATGTGCAGGAACGTCCTGCACAACACTTCGTGCAGGATGCGGGTCTTATT
GGTCAAGGCAGGTCTTCCGACCGCCCGGCGTTTGTTTTTTTTAAAACGCC
ACCAAAACGCCCGGCGGAGCCGCGTGACTGCCCCTGCCGACCTCGAGCCC
CCTAAAGGGTTGAGGTTAGTGTTAGAGTTAGGGTTTTGGCCTGGGGTTGG
GTTGGTCTGGCCGACGTGCAAGGTTGAAAATGATGACACACGTCCTGCAC
AAAGTTTTGTGCAGGACGCTCCTGCACATAAGCGGGAGCCCAATTAATGG
GCTATTGTTTAGAGTCGTGCTGATTTTTGTGTTTTGTACGGTCGCTGCGT
CTCTTCCCTATTGACCGCCTCGCGTGGCGAACGATCGGTGTGCAGGAGGC
GGAGGATGCGATGATGAGCTTGCGAAAGAGACTAGAGCAGCAGCTGCCGC
CAGACACGGACAAAGAACAGGCAGAGAAGAGGCGAATCGCGATGCAGAAC
CAGCAGAACCAGCAGAAGGCCAAGGAGGGCCCGCTGAAGCCACCAAGGTT
AGTTTCTCCATGTGTGTGCTAAGTTTCAGTACTTCGGGGTAGGGTGTATA
TTCTTGAGCTACTCGGGTACCAAAGCTGGTTGTTTTGGTCATACTCGGGT
GTGTACCCGGGTACCACACCTGGTTGTTTTGGTGGTACTGGGGTATGTAC
CCGGGTACCAAACCTGGTTGTTTTGGTCATACTCGGGTAGGCACCCTATT
AAACACACCTTTGCAGTCTTGGCTTTGCATCGAGCGACTCTGCCGAGACA
GTTTGAGTGTGTACCCGACCCACGTGGGACTGGCGTGGATGGTTGGCTGG
GATAGTATCTTCTCCGTATTCGCTTAGACGTGTTCACAAAACGTGCGTGT
CCCAAGCGTCGTGCAAATCTCATGTTTAAGCTGTCAAGGGAGAGGATTTG
TGGAAACATATCGTTGCGTGCGGCAGGTATTACCGTCTTCGGTGCTGTTT
GGCGCGTGCCGCTGTCGTTTCTACATAGATATGCGCCCAACAAAAAAAAA
AATGAGCAGCCTCATGCACGAATAAGCTTTCATGTTTTTGATCGTCGAAT
CTGATTTTGACGTCAACGCTTTCGGTCGAAATTGACTCTTTTTTTCTATT
TGCGCCCTGCCCTGTGCCCACCCTCGATTGATTTATATTTCTCTTTTCTC
AGGTTTGACGGAGACACCGCTGTTGCCGAGCGTCCCTCGCCGACCGACGG
CGCGCGACAGTCCCCAGAGGTGTGTTGCAAATTTAATTTATAGAAAAACA
AGGTTGTAACAACACAAGTGCAGCTACTGTATCAATAGTATGTAGACTGA
AAAAACTGTGTAGAGGAAGGTAGAGGCGTGTTCAAGTGAGTACGTAAGAG
AGTAAGGAGAATGGATTGGGAGAGTGGTGGTGCTCGGTACGTTGTTAATC
AGCTTGAACACTGGTGTTAATAGAACTGCCGTCCCGTTTTGGAGACACTC
TACTTATTAGTTGGGTGGTTTGTCCCCAAAGCGGTATTGCAGTCGTGAAA
GGGTTCAGGTGCACGAAGTACCTTATACTATCATCAAGATAACCCGCCCT
GGGACGAAACTTCGCAGCGAATTTCCTTCAAAACCAGCGGGGGCGCACCC
GACGAAAATGGCGGCTTCGTAAAGTTCTCGTCGAGATATTCTTTCCATAA
CCGCGCCTCTCGGCGTTTGCACTCGCCCCGTGGTCGAGAAAACCAGCTTT
GGAAGTTCACCCGAGGGGGTGTGCTATCATATCACCCTAGTGTGATATCT
TGTGAATACCGTTCTATACTACAGATAGTACTGAGAGAAATGATTCATTG
TACATTGCTGGAAGGCTAATGAAATGGTCATATGTAAGAACCGTTTGGAA
TTTTCTAATGATATAGAAACAGTCCTTTCATTTCGGCATAAGAGAGGTAT
TCCTGAGCTATCGCCACGTTGCCTATTGTTATGTTCTACGAAGCCGTCAA
CCAAATAACCCCGTTAACGCATTTGTATCAGACACGACTATACTGCGTGT
ATCATCTATAGCAGTCAGCAAAGCAAGCCCAAAAATGTATCAATACCACC
GAACCGCTCCATGGCTGGTTGTTGGGTGCGTCAAGAGGTGGTGGGTCGGT
AATCACGGTATAAAAGAGGTATATGAGACACTAAAAAGTACCGAGACGCG
TGTGTGTGCAGCGTATTTCAGTTGGAATCGCTTCCGATCGGCGGGATTGT
TGAGATTGGGTCCCTCGCCCCTTTGCTCGAATGCCATGGCATCGCAGTCG
GTAGTATACGTTGCGCTATTCGACGTTTGCCGGACATTTACACGATGCAA
CGGGGGGGGGTTTTCGTTCTCACGTGTCTCTCGCTAACTGTGATACGATG
ATTTCCCTTGGCGTGCGTCGTTGACTTCACGCCTGCACTTGTGTCACAGG
ATGTGCCGAGTCCAAGGGAAACGCCCAAGCTAGCCTCCGCAGAAGATGTC
GAGCGCCTCAACCGTATGTTTGGCTCCATGGGCGGCGAGCCGTTGCGCTA
G back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig1117:11156..16706+ >mRNA_M-pyrifera_M_contig1117.2446.1 ID=mRNA_M-pyrifera_M_contig1117.2446.1|Name=mRNA_M-pyrifera_M_contig1117.2446.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1752bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:11156..16706+ (Macrocystis pyrifera P11B4 male) ATGGAGTCGCCAAGGGTATCTCTTTCCTTTGTCGCCGTTCTAATCAGCGT GTTGGCGCATCCGACATGTGTGGATGGCTTCTTCGTCCCGGCTCCTGCTT GCAGACCAACCGCTGCTGCACTGGGAAGCCGAGCTATGGGAACCAGCGCC CTCTCCAGCAGACCCGAAGCTGCACCACGGCGAATGCACGAGGTGTGGAG GCGGCAAGCTTCTATGTCGGCCCGCCAGCCAGGAGATGGGGCACCGACGG GATGGAGTCGCCAAGGGTATCTCTTTCCTTTGTCGCCGTTCTAATCAGCG TGTTGGCGCATCCGACATGTGTGGATGGCTTCTTCGTCCCGGCTCCTGCT TGCAGACCAACCGCTGCTGCACTGGGAAGCCGAGCTATGGGAACCAGCGC CCTCTCCAGCAGACCCGAAGCTGCACCACGGCGAATGCACGAGGTGTGGA GGCGGCAAGCTTCTATGTCGGCCCGCCAGCCAGGAGATGGGGCACCGACG GGCAGATCTCAAGAGGGGGGGGGCGGATCGACGTCGCGACTGTCGCGCAT CTCTATGCGCGTGAGGAAGATGATTCGGAAGGCCGTCATGGGCTACCTCC CGGAAGAGGAGATGTCGTACAAGCAGACAACAGCCAAGGCCGCAGCCGAG GCGGCGGCTTTGCGCGATCAGTACGAGCAGATCTCAAGAGGGGGGGGGCG GATCGACGTCGCGACTGTCGCGCATCTCTATGCGCGTGAGGAAGATGATT CGGAAGGCCGTCATGGGCTACCTCCCGGAAGAGGAGATGTCGTACAAGCA GACAACAGCCAAGGCCGCAGCCGAGGCGGCGGCTTTGCGCGATCAGTACG AGGTTGCCAACCCGCGGCTGCAGGCAGACGGTCTCAAGGCACAGGGAGCG GCAGCTGAAGCGGTCGACAACTTTGAAGATGAGGACGATATTCTAGGCGA GGGCTTCGTGCGGCTCAACATCGGAGACCAAACCCCAAAGGTTGCCAACC CGCGGCTGCAGGCAGACGGTCTCAAGGCACAGGGAGCGGCAGCTGAAGCG GTCGACAACTTTGAAGATGAGGACGATATTCTAGGCGAGGGCTTCGTGCG GCTCAACATCGGAGACCAAACCCCAAAGGAGGCGGAGGATGCGATGATGA GCTTGCGAAAGAGACTAGAGCAGCAGCTGCCGCCAGACACGGACAAAGAA CAGGCAGAGAAGAGGCGAATCGCGATGCAGAACCAGCAGAACCAGCAGAA GGCCAAGGAGGGCCCGCTGAAGCCACCAAGGAGGCGGAGGATGCGATGAT GAGCTTGCGAAAGAGACTAGAGCAGCAGCTGCCGCCAGACACGGACAAAG AACAGGCAGAGAAGAGGCGAATCGCGATGCAGAACCAGCAGAACCAGCAG AAGGCCAAGGAGGGCCCGCTGAAGCCACCAAGGTTTGACGGAGACACCGC TGTTGCCGAGCGTCCCTCGCCGACCGACGGCGCGCGACAGTCCCCAGAGG TGTTTGACGGAGACACCGCTGTTGCCGAGCGTCCCTCGCCGACCGACGGC GCGCGACAGTCCCCAGAGGTTCCAAGGGAAACGCCCAAGCTAGCCTCCGC AGAAGATGTCGAGCGCCTCAACCGTATGTTTGGCTCCATGGGCGGCGAGC CGTTGCGCTAGTCCAAGGGAAACGCCCAAGCTAGCCTCCGCAGAAGATGT CGAGCGCCTCAACCGTATGTTTGGCTCCATGGGCGGCGAGCCGTTGCGCT AG back to top
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