mRNA_M-pyrifera_M_contig1117.2444.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: D7FM68_ECTSI (Procaryotic DNA polymerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM68_ECTSI) HSP 1 Score: 169 bits (429), Expect = 8.250e-48 Identity = 93/142 (65.49%), Postives = 109/142 (76.76%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGT-ERLLEFMRDNGLPDLANRTSNILGID 423
VL+KFLAPPGRLADLL I GDKSD IVG +GYGPVKAAKVLAKH TLE AVD+IC+ ++KK DP LV +TR LARRLVEL T VPLDRRTG K+LASV F L+ G+G ERLL FMR + +L+ RTS +LG++
Sbjct: 347 VLAKFLAPPGRLADLLAIAGDKSDGIVGAEGYGPVKAAKVLAKHETLEAAVDEICSTISKKIEDPELVAKTREQVLLARRLVELCTTVPLDRRTGLKSLASVPTFHLE---GEGAAERLLAFMRRFEMDELSLRTSRLLGVN 485
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: UPI00165E04D2 (DNA polymerase I n=1 Tax=Sphingosinithalassobacter sp. CS137 TaxID=2762748 RepID=UPI00165E04D2) HSP 1 Score: 64.3 bits (155), Expect = 3.340e-9 Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPL 270
VL KF PG+L ++L + GD D++ GV G GP +AA+++ ++ +E AV +M K + L+E A A L+RRLVELS VPL
Sbjct: 165 VLEKFGVEPGKLGEVLALMGDSVDNVPGVPGIGPKRAAELIQQYGDVE-AVLAAAPDMKKSKMRENLIEHAEA-ARLSRRLVELSCDVPL 252
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A7X9DXQ2_9DELT (DNA polymerase I n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9DXQ2_9DELT) HSP 1 Score: 63.2 bits (152), Expect = 8.410e-9 Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGK 339
V K PP R+ADLL + GD SD++ GV G G AA++LA+H +LEE + M + L+ + A A L+ RLV L+ AVPL ++ P AL++ + +
Sbjct: 165 VQEKMGVPPERIADLLALMGDSSDNVPGVSGVGEKTAARLLAEHGSLEEVLA-AAPSMKPGKLRERLMSEAEA-ARLSLRLVTLNRAVPLPLSLSDLSVRPPEPEALRAFLAE 275
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: UPI000D6DF82C (DNA polymerase I n=1 Tax=Sphingosinithalassobacter portus TaxID=2676234 RepID=UPI000D6DF82C) HSP 1 Score: 61.6 bits (148), Expect = 2.900e-8 Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGTERLLEFMRDNGLPDLANRTSNILGIDTGE 432
V+ KF PP +L ++L + GD D++ GV G GP +AA ++ ++ +E + +M K + L+E A L+R+LVEL+ VPL + FAL+ G L F+ +G L NR S++ E
Sbjct: 164 VIEKFGVPPEKLGEVLALMGDSVDNVPGVPGIGPKRAADLINEYGDVESVLA-AAPDMKKSKMRDNLIEHAEM-ARLSRKLVELARDVPLPD--------PLEEFALK---GIPEPPLRAFLEHHGFKSLLNRLSSVADAPMAE 294
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A2G6JF52_9BACT (DNA polymerase I n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2G6JF52_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 2.910e-8 Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
V+ KF PP ++ DLL + GD SD++ GV G GP KAA++L ++ +L+ A+ D M K + L+E R A L+R+LV + T + L+
Sbjct: 211 VIEKFGVPPEQIIDLLALMGDSSDNVPGVPGIGPKKAAQLLNEYGSLD-AILDAAEGMKKSKMRENLIE-FRDQALLSRKLVTIVTDLDLE 299
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A7V5NVP1_9BACT (DNA polymerase I (Fragment) n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7V5NVP1_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 3.810e-8 Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVD---DICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
V KF PPG++ DLL ++GD SD++ G+ GP AAK++ ++ LEE +D +I +E K N+ +Q R L++ LV L VP+D
Sbjct: 162 VEDKFDVPPGKIVDLLALSGDSSDNVPGIPKIGPKTAAKLIKEYGDLEEIIDHANEITSEKIKDNITE-YADQGR----LSKELVILDKNVPVD 250
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A318KV49_9NEIS (DNA polymerase I n=1 Tax=Rivicola pingtungensis TaxID=1054498 RepID=A0A318KV49_9NEIS) HSP 1 Score: 61.2 bits (147), Expect = 3.950e-8 Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
V KF PP R+ D LT+TGDK D++ GVDG GP AAK LA+H +L+ + A+ K L H L+R+LV + V L
Sbjct: 160 VQEKFGVPPERIIDFLTLTGDKVDNVPGVDGCGPKTAAKWLAEHGSLDAII--AAADSVKGKAGEKL-RAALPHLPLSRQLVTIKLDVDLS 247
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A430DPZ7_9SPHN (DNA polymerase I n=5 Tax=Sphingomonas TaxID=13687 RepID=A0A430DPZ7_9SPHN) HSP 1 Score: 59.7 bits (143), Expect = 1.350e-7 Identity = 43/139 (30.94%), Postives = 67/139 (48.20%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEE--AVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGTERLLEFMRDNGLPDLANRTSNI 411
V+ KF PP +L ++L + GD D++ GV G GP +AA+++ ++ +E A D M K + LVE A A L+R+LV L+ VPL L + L++ F+ +G L NR S +
Sbjct: 164 VVEKFGVPPSQLGEVLALMGDSVDNVPGVPGIGPKRAAELITEYGDVESVLAATD---SMKKSKMRDNLVEHAEA-ARLSRKLVTLACDVPLPEPLDGLELQGIPDAPLRA-----------FLEHHGFRTLLNRLSAV 287
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A1T5JSW9_9BACT (DNA polymerase I n=1 Tax=Bacteroidales bacterium WCE2004 TaxID=1945890 RepID=A0A1T5JSW9_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 1.840e-7 Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 16 LAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
++ P ++ D+L + GD SD++ GV G GPV AA++L K+ ++E + E+T + + Q H SL++RLV + T +PLD
Sbjct: 171 ISAPAQVIDILALCGDASDNVPGVQGVGPVGAARLLGKYGSVEGIYGHL-GELTARQQEQFRAAQD--HISLSKRLVTIKTDIPLD 253
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A2E2ZXA6_SPHSX (DNA polymerase I n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A2E2ZXA6_SPHSX) HSP 1 Score: 58.9 bits (141), Expect = 2.510e-7 Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 1
Query: 1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGTER--LLEFMRDNGLPDLANRTSNILGIDTGE 432
V+ KF PP +L ++L + GD D++ GV G GP +AA ++ ++ +E + +M K + L+E A L+R+LVEL+ VPL P L+ KG L F+ +G L NR +++ E
Sbjct: 164 VIEKFGVPPEKLGEVLALMGDSVDNVPGVPGIGPKRAADLINEYGDVESVLA-AAPDMKKSKMRDNLIEHAEM-ARLSRKLVELARDVPL-------------PDPLEELELKGIPEPPLRAFLEHHGFKSLLNRLTSVADAPMAE 294 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1117.2444.1 >prot_M-pyrifera_M_contig1117.2444.1 ID=prot_M-pyrifera_M_contig1117.2444.1|Name=mRNA_M-pyrifera_M_contig1117.2444.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAback to top mRNA from alignment at M-pyrifera_M_contig1117:3401..5005- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1117.2444.1 ID=mRNA_M-pyrifera_M_contig1117.2444.1|Name=mRNA_M-pyrifera_M_contig1117.2444.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:3401..5005- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1117:3401..5005- >mRNA_M-pyrifera_M_contig1117.2444.1 ID=mRNA_M-pyrifera_M_contig1117.2444.1|Name=mRNA_M-pyrifera_M_contig1117.2444.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:3401..5005- (Macrocystis pyrifera P11B4 male)back to top |