mRNA_M-pyrifera_M_contig1117.2444.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1117.2444.1
Unique NamemRNA_M-pyrifera_M_contig1117.2444.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: D7FM68_ECTSI (Procaryotic DNA polymerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM68_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 8.250e-48
Identity = 93/142 (65.49%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGT-ERLLEFMRDNGLPDLANRTSNILGID 423
            VL+KFLAPPGRLADLL I GDKSD IVG +GYGPVKAAKVLAKH TLE AVD+IC+ ++KK  DP LV +TR    LARRLVEL T VPLDRRTG K+LASV  F L+   G+G  ERLL FMR   + +L+ RTS +LG++
Sbjct:  347 VLAKFLAPPGRLADLLAIAGDKSDGIVGAEGYGPVKAAKVLAKHETLEAAVDEICSTISKKIEDPELVAKTREQVLLARRLVELCTTVPLDRRTGLKSLASVPTFHLE---GEGAAERLLAFMRRFEMDELSLRTSRLLGVN 485          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: UPI00165E04D2 (DNA polymerase I n=1 Tax=Sphingosinithalassobacter sp. CS137 TaxID=2762748 RepID=UPI00165E04D2)

HSP 1 Score: 64.3 bits (155), Expect = 3.340e-9
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPL 270
            VL KF   PG+L ++L + GD  D++ GV G GP +AA+++ ++  +E AV     +M K  +   L+E   A A L+RRLVELS  VPL
Sbjct:  165 VLEKFGVEPGKLGEVLALMGDSVDNVPGVPGIGPKRAAELIQQYGDVE-AVLAAAPDMKKSKMRENLIEHAEA-ARLSRRLVELSCDVPL 252          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A7X9DXQ2_9DELT (DNA polymerase I n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9DXQ2_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 8.410e-9
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGK 339
            V  K   PP R+ADLL + GD SD++ GV G G   AA++LA+H +LEE +      M    +   L+ +  A A L+ RLV L+ AVPL       ++    P AL++ + +
Sbjct:  165 VQEKMGVPPERIADLLALMGDSSDNVPGVSGVGEKTAARLLAEHGSLEEVLA-AAPSMKPGKLRERLMSEAEA-ARLSLRLVTLNRAVPLPLSLSDLSVRPPEPEALRAFLAE 275          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: UPI000D6DF82C (DNA polymerase I n=1 Tax=Sphingosinithalassobacter portus TaxID=2676234 RepID=UPI000D6DF82C)

HSP 1 Score: 61.6 bits (148), Expect = 2.900e-8
Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGTERLLEFMRDNGLPDLANRTSNILGIDTGE 432
            V+ KF  PP +L ++L + GD  D++ GV G GP +AA ++ ++  +E  +     +M K  +   L+E     A L+R+LVEL+  VPL           +  FAL+   G     L  F+  +G   L NR S++      E
Sbjct:  164 VIEKFGVPPEKLGEVLALMGDSVDNVPGVPGIGPKRAADLINEYGDVESVLA-AAPDMKKSKMRDNLIEHAEM-ARLSRKLVELARDVPLPD--------PLEEFALK---GIPEPPLRAFLEHHGFKSLLNRLSSVADAPMAE 294          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A2G6JF52_9BACT (DNA polymerase I n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2G6JF52_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.910e-8
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
            V+ KF  PP ++ DLL + GD SD++ GV G GP KAA++L ++ +L+ A+ D    M K  +   L+E  R  A L+R+LV + T + L+
Sbjct:  211 VIEKFGVPPEQIIDLLALMGDSSDNVPGVPGIGPKKAAQLLNEYGSLD-AILDAAEGMKKSKMRENLIE-FRDQALLSRKLVTIVTDLDLE 299          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A7V5NVP1_9BACT (DNA polymerase I (Fragment) n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7V5NVP1_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 3.810e-8
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVD---DICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
            V  KF  PPG++ DLL ++GD SD++ G+   GP  AAK++ ++  LEE +D   +I +E  K N+     +Q R    L++ LV L   VP+D
Sbjct:  162 VEDKFDVPPGKIVDLLALSGDSSDNVPGIPKIGPKTAAKLIKEYGDLEEIIDHANEITSEKIKDNITE-YADQGR----LSKELVILDKNVPVD 250          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A318KV49_9NEIS (DNA polymerase I n=1 Tax=Rivicola pingtungensis TaxID=1054498 RepID=A0A318KV49_9NEIS)

HSP 1 Score: 61.2 bits (147), Expect = 3.950e-8
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
            V  KF  PP R+ D LT+TGDK D++ GVDG GP  AAK LA+H +L+  +    A+  K      L      H  L+R+LV +   V L 
Sbjct:  160 VQEKFGVPPERIIDFLTLTGDKVDNVPGVDGCGPKTAAKWLAEHGSLDAII--AAADSVKGKAGEKL-RAALPHLPLSRQLVTIKLDVDLS 247          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A430DPZ7_9SPHN (DNA polymerase I n=5 Tax=Sphingomonas TaxID=13687 RepID=A0A430DPZ7_9SPHN)

HSP 1 Score: 59.7 bits (143), Expect = 1.350e-7
Identity = 43/139 (30.94%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEE--AVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGTERLLEFMRDNGLPDLANRTSNI 411
            V+ KF  PP +L ++L + GD  D++ GV G GP +AA+++ ++  +E   A  D    M K  +   LVE   A A L+R+LV L+  VPL        L  +    L++           F+  +G   L NR S +
Sbjct:  164 VVEKFGVPPSQLGEVLALMGDSVDNVPGVPGIGPKRAAELITEYGDVESVLAATD---SMKKSKMRDNLVEHAEA-ARLSRKLVTLACDVPLPEPLDGLELQGIPDAPLRA-----------FLEHHGFRTLLNRLSAV 287          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A1T5JSW9_9BACT (DNA polymerase I n=1 Tax=Bacteroidales bacterium WCE2004 TaxID=1945890 RepID=A0A1T5JSW9_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.840e-7
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   16 LAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLD 273
            ++ P ++ D+L + GD SD++ GV G GPV AA++L K+ ++E     +  E+T +  +     Q   H SL++RLV + T +PLD
Sbjct:  171 ISAPAQVIDILALCGDASDNVPGVQGVGPVGAARLLGKYGSVEGIYGHL-GELTARQQEQFRAAQD--HISLSKRLVTIKTDIPLD 253          
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Match: A0A2E2ZXA6_SPHSX (DNA polymerase I n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A2E2ZXA6_SPHSX)

HSP 1 Score: 58.9 bits (141), Expect = 2.510e-7
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 1
Query:    1 VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEAVDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLASVAPFALQSGIGKGTER--LLEFMRDNGLPDLANRTSNILGIDTGE 432
            V+ KF  PP +L ++L + GD  D++ GV G GP +AA ++ ++  +E  +     +M K  +   L+E     A L+R+LVEL+  VPL             P  L+    KG     L  F+  +G   L NR +++      E
Sbjct:  164 VIEKFGVPPEKLGEVLALMGDSVDNVPGVPGIGPKRAADLINEYGDVESVLA-AAPDMKKSKMRDNLIEHAEM-ARLSRKLVELARDVPL-------------PDPLEELELKGIPEPPLRAFLEHHGFKSLLNRLTSVADAPMAE 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1117.2444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM68_ECTSI8.250e-4865.49Procaryotic DNA polymerase I n=1 Tax=Ectocarpus si... [more]
UPI00165E04D23.340e-942.22DNA polymerase I n=1 Tax=Sphingosinithalassobacter... [more]
A0A7X9DXQ2_9DELT8.410e-936.28DNA polymerase I n=1 Tax=Myxococcales bacterium Ta... [more]
UPI000D6DF82C2.900e-830.56DNA polymerase I n=1 Tax=Sphingosinithalassobacter... [more]
A0A2G6JF52_9BACT2.910e-839.56DNA polymerase I n=1 Tax=Planctomycetes bacterium ... [more]
A0A7V5NVP1_9BACT3.810e-838.30DNA polymerase I (Fragment) n=1 Tax=Candidatus Clo... [more]
A0A318KV49_9NEIS3.950e-840.66DNA polymerase I n=1 Tax=Rivicola pingtungensis Ta... [more]
A0A430DPZ7_9SPHN1.350e-730.94DNA polymerase I n=5 Tax=Sphingomonas TaxID=13687 ... [more]
A0A1T5JSW9_9BACT1.840e-736.05DNA polymerase I n=1 Tax=Bacteroidales bacterium W... [more]
A0A2E2ZXA6_SPHSX2.510e-729.45DNA polymerase I n=2 Tax=Sphingomonadaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1117contigM-pyrifera_M_contig1117:3401..5005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue5.3e-40
Seed eggNOG ortholog2880.D7FM68
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-3' exonuclease, N-terminal resolvase-like domain
EggNOG OGs2QSF6@2759,COG0258@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size435
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1117.2444.1prot_M-pyrifera_M_contig1117.2444.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1117 3401..5005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.0367362-CDS-M-pyrifera_M_contig1117:3400..36401622815630.0367362-CDS-M-pyrifera_M_contig1117:3400..3640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 3401..3640 -
1692277495.5406811-CDS-M-pyrifera_M_contig1117:3400..36401692277495.5406811-CDS-M-pyrifera_M_contig1117:3400..3640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 3401..3640 -
1622815630.0502667-CDS-M-pyrifera_M_contig1117:4318..43961622815630.0502667-CDS-M-pyrifera_M_contig1117:4318..4396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 4319..4396 -
1692277495.552147-CDS-M-pyrifera_M_contig1117:4318..43961692277495.552147-CDS-M-pyrifera_M_contig1117:4318..4396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 4319..4396 -
1622815630.0655186-CDS-M-pyrifera_M_contig1117:4888..50051622815630.0655186-CDS-M-pyrifera_M_contig1117:4888..5005Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 4889..5005 -
1692277495.5626454-CDS-M-pyrifera_M_contig1117:4888..50051692277495.5626454-CDS-M-pyrifera_M_contig1117:4888..5005Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 4889..5005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1117.2444.1

>prot_M-pyrifera_M_contig1117.2444.1 ID=prot_M-pyrifera_M_contig1117.2444.1|Name=mRNA_M-pyrifera_M_contig1117.2444.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
VLSKFLAPPGRLADLLTITGDKSDDIVGVDGYGPVKAAKVLAKHATLEEA
VDDICAEMTKKNVDPALVEQTRAHASLARRLVELSTAVPLDRRTGAKTLA
SVAPFALQSGIGKGTERLLEFMRDNGLPDLANRTSNILGIDTGE*
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mRNA from alignment at M-pyrifera_M_contig1117:3401..5005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1117.2444.1 ID=mRNA_M-pyrifera_M_contig1117.2444.1|Name=mRNA_M-pyrifera_M_contig1117.2444.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:3401..5005- (Macrocystis pyrifera P11B4 male)
GTGCTTTCGAAATTCCTTGCCCCGCCGGGGAGGCTGGCGGACCTTCTGAC GATAACGGGCGACAAATCCGACGACATTGTCGGAGTGGACGGTTACGGTC CTGTCAAGGCAGCCAAGGTGAGGGTGACCCTGTGTCTGACTAAGATTTGT TTTCTCGATGAATCGCAATTCCCATAGCATTTAGCGATATTATTAACAGC TTCGTATATATTTTCGGTAGAAAGACTTACCGTAAGAGCCTTGAGTGCGC ACAATTAAAGGGGTGCGATCGTTTTGCAGCGCCCGTTTTCTCGACAGCGG TGAGTATGAGGGTGCTAAAGTCGAACGTCACTTTTTCGGAAGACTCGACC AGATTTTTCCTCAAACACCTTGTTCGTTCGGTGTTGGCAACTTTCCCGTT CTGGAAGAACCCCTTGTGCGAGATCGATGCTCTTTACGGTACCTATTGAG TATTGAGTCCTTTCATTCACACAGGTAGTTCTTGTGAATACCGCATCAGT AGAAGTTGATGGACAGCGCAAGGAAAAAGCCATTTTCCCTTTGAATCCTG AACATGTTTTGCCCCACGTGCCACTGTGTCGTACACTATAATACTTTTTT TGTTTATAGGTGCTGGCCAAGCACGCGACGCTTGAAGAGGCGGTGGATGA TATTTGCGCGGAAATGACCAAGAAGAACGTGGATCCGGTGAGTCGGCTTC GTGTCACTAAAAATTATTTTTTCTTCTTCATACGACTGGCATTTTTTTCT TTCCATGCCATTTGCAATCTTCTCCCTTCTTTCTCTTGCTCTCTCCCTTG TCGTGACTCAGATCCGGGGTGACATAGCATTTCCCCCCCCCCCTACACAA CGGCACGCACGCGCCGTGCTTTTTTTTTTCTCGAGAAGGGCTCAGCTCAT CCTTCCCCCGTCGAGTGGCGTTGTATTGTGCTCACGCGCGCTAGGCGCCT TTGGCGGTTGGTGTCTTTCGAGAAAACAAAATCCACATGGACAATTGATC CCTTGACATCAACGCTAATAGCAGTATTCGAGGTTAACCGCTAGACCACC GGGGCGACCGGCTAATAGCTTCGTTCCGTGGTACTCTGTCGCTGATTGCG CCAAAAACTACACGCGTCGTTGATCCAGTGTTATCAGCTGCTTTGTCTGG CGCAGGATGTGCTGTGGCCCAGAGCTATCTCGTGCCGTGGTAATACGTAC CATACGATTCGGAAACCTTACATTCCGATGTTGATATTTGATACCAGGAA TTCACCAACACGGTACGGGCACGTTCGGTTCGTAATATATTGTGCCTTTG ACATTCTTCCCAGTCCGCCTCATCCCTGACCCACGACCGCTGTAATACAC TTGCGTCTGAACCAGGCGCTTGTGGAACAGACCAGGGCGCATGCATCGCT GGCGAGAAGGCTGGTTGAGTTGTCTACAGCTGTGCCTCTTGACCGAAGAA CCGGCGCCAAGACTCTAGCGTCAGTCGCGCCGTTCGCCTTGCAATCGGGA ATCGGAAAGGGTACGGAGAGATTGCTAGAATTCATGAGAGACAACGGGCT GCCGGACCTGGCCAATCGGACGTCTAATATATTGGGAATAGATACTGGGG AGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1117:3401..5005-

>mRNA_M-pyrifera_M_contig1117.2444.1 ID=mRNA_M-pyrifera_M_contig1117.2444.1|Name=mRNA_M-pyrifera_M_contig1117.2444.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:3401..5005- (Macrocystis pyrifera P11B4 male)
GTGCTTTCGAAATTCCTTGCCCCGCCGGGGAGGCTGGCGGACCTTCTGAC
GATAACGGGCGACAAATCCGACGACATTGTCGGAGTGGACGGTTACGGTC
CTGTCAAGGCAGCCAAGGTGCTTTCGAAATTCCTTGCCCCGCCGGGGAGG
CTGGCGGACCTTCTGACGATAACGGGCGACAAATCCGACGACATTGTCGG
AGTGGACGGTTACGGTCCTGTCAAGGCAGCCAAGGTGCTGGCCAAGCACG
CGACGCTTGAAGAGGCGGTGGATGATATTTGCGCGGAAATGACCAAGAAG
AACGTGGATCCGGTGCTGGCCAAGCACGCGACGCTTGAAGAGGCGGTGGA
TGATATTTGCGCGGAAATGACCAAGAAGAACGTGGATCCGGCGCTTGTGG
AACAGACCAGGGCGCATGCATCGCTGGCGAGAAGGCTGGTTGAGTTGTCT
ACAGCTGTGCCTCTTGACCGAAGAACCGGCGCCAAGACTCTAGCGTCAGT
CGCGCCGTTCGCCTTGCAATCGGGAATCGGAAAGGGTACGGAGAGATTGC
TAGAATTCATGAGAGACAACGGGCTGCCGGACCTGGCCAATCGGACGTCT
AATATATTGGGAATAGATACTGGGGAGTAAGCGCTTGTGGAACAGACCAG
GGCGCATGCATCGCTGGCGAGAAGGCTGGTTGAGTTGTCTACAGCTGTGC
CTCTTGACCGAAGAACCGGCGCCAAGACTCTAGCGTCAGTCGCGCCGTTC
GCCTTGCAATCGGGAATCGGAAAGGGTACGGAGAGATTGCTAGAATTCAT
GAGAGACAACGGGCTGCCGGACCTGGCCAATCGGACGTCTAATATATTGG
GAATAGATACTGGGGAGTAA
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