mRNA_M-pyrifera_M_contig111672.2435.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111672.2435.1
Unique NamemRNA_M-pyrifera_M_contig111672.2435.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S0ZRU7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZRU7_NOCSC)

HSP 1 Score: 91.7 bits (226), Expect = 2.380e-22
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAELVK 204
            VRNSW   WGENG+IR+KR+  D   CGTD TP DGT C+GG     VCG CG+L+D  YP GAE+VK
Sbjct:   51 VRNSWDTTWGENGYIRIKRSRHD---CGTDVTPSDGTGCSGGPATQHVCGECGLLFDVTYPLGAEIVK 115          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A5A8C7Y2_CAFRO (Uncharacterized protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8C7Y2_CAFRO)

HSP 1 Score: 95.9 bits (237), Expect = 6.360e-22
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAELVK 204
            +RNSW+PLWGE+G+IR+KRT      CG D+TPQDG  CAGG  +  VCGMCG+L D+AYP G +L +
Sbjct:  308 IRNSWTPLWGESGYIRLKRTTS----CGIDRTPQDGNGCAGGPNDIKVCGMCGVLSDTAYPVGTKLAR 371          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A812U847_9DINO (CP1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U847_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 2.160e-20
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAEL 198
            +RNSWSP WGE+G+IR+ R   DA  CG D TPQDG+ C G      VCG CG+L D+AYP GA+L
Sbjct:  295 IRNSWSPTWGEHGYIRLARYGGDANKCGIDSTPQDGSACKGDTAPVKVCGQCGVLSDTAYPVGAKL 360          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S2WUJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUJ5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.770e-20
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEG 189
            +RNSW P WGE G+IR++R  D+A  CG D TP DG  C GG    TVCG CGIL+D++YP G
Sbjct:  310 IRNSWGPAWGEQGYIRIQRVDDEANLCGVDVTPADGVGCEGGPDNVTVCGTCGILYDTSYPTG 372          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: F2UB19_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UB19_SALR5)

HSP 1 Score: 90.1 bits (222), Expect = 1.080e-19
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYP 183
            VRNSW+P WGE+G+IR++RTA++   CG D TPQDG+ C GG  +  VCG CGIL+D+ YP
Sbjct:  331 VRNSWTPHWGESGYIRIRRTANEGGRCGMDITPQDGSGCKGGPDKVKVCGTCGILFDNVYP 391          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4WB60_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WB60_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 1.120e-18
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAEL 198
            ++NSW P WGE+G IR+ R  DD++ CG D+ P+ GT C GG K+  VCGMCG+L+DSA P   +L
Sbjct:  344 IQNSWGPTWGEHGHIRLLRREDDSEQCGIDRQPEVGTACEGGPKQVKVCGMCGVLYDSAVPHFKKL 409          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4T7I5_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4T7I5_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 1.280e-18
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYP 183
            +RNSW P WGE+G IR+ R  DD++ CG D+ P+ GT C GG K   VCGMCG+L+DSA P
Sbjct:  375 IRNSWGPAWGEHGHIRLLRREDDSEQCGVDRKPEVGTACKGGPKVVKVCGMCGVLYDSAVP 435          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4W2B3_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W2B3_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-18
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYP 183
            +RNSW P WGE+G IR+ R  DD++ CG D+ P+ GT C GG K   VCGMCG+L+DSA P
Sbjct:  381 IRNSWGPAWGEHGHIRLLRREDDSEQCGVDRKPEVGTACKGGPKVVKVCGMCGVLYDSAVP 441          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S2VTM3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VTM3_9DINO)

HSP 1 Score: 83.6 bits (205), Expect = 3.490e-18
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAELVK 204
            VRNSW   WGE+G+IR++R A  A  CG D+TP DGT CAGG    TVCG CGIL+D+++P  A +V+
Sbjct:  148 VRNSWGTSWGESGYIRLRREATPA--CGEDRTPLDGTGCAGGESVQTVCGACGILFDASHPIDAVVVQ 213          
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4I5F1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I5F1_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.270e-17
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPE 186
            VRNSWSP WGE+G+IR+ R   +   CG D TPQ GT C GG    TVCG CG+L+  +YPE
Sbjct:  119 VRNSWSPSWGEDGYIRLARATSNPP-CGVDSTPQAGTGCNGGPANVTVCGSCGVLYSVSYPE 179          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0ZRU7_NOCSC2.380e-2260.29Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A5A8C7Y2_CAFRO6.360e-2258.82Uncharacterized protein n=2 Tax=Sar TaxID=2698737 ... [more]
A0A812U847_9DINO2.160e-2057.58CP1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
A0A7S2WUJ5_9STRA4.770e-2057.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F2UB19_SALR51.080e-1959.02Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S4WB60_9DINO1.120e-1853.03Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S4T7I5_9DINO1.280e-1857.38Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S4W2B3_9DINO1.310e-1857.38Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
A0A7S2VTM3_9DINO3.490e-1855.88Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S4I5F1_9EUKA1.270e-1756.45Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111672contigM-pyrifera_M_contig111672:18..224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score92.4
Seed ortholog evalue8.7e-17
Seed eggNOG ortholog946362.XP_004993594.1
KEGG koko:K01365,ko:K01371
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04380,ko04612,ko04620,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04380,map04612,map04620,map05205,map05323,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-type endopeptidase activity
EggNOG OGs38I5R@33154,COG4870@1,KOG1543@2759
EC3.4.22.15,3.4.22.38
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.6125805-CDS-M-pyrifera_M_contig111672:17..2241622815629.6125805-CDS-M-pyrifera_M_contig111672:17..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111672 18..224 +
1692277495.3736005-CDS-M-pyrifera_M_contig111672:17..2241692277495.3736005-CDS-M-pyrifera_M_contig111672:17..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111672 18..224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111672.2435.1prot_M-pyrifera_M_contig111672.2435.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111672 18..224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111672.2435.1

>prot_M-pyrifera_M_contig111672.2435.1 ID=prot_M-pyrifera_M_contig111672.2435.1|Name=mRNA_M-pyrifera_M_contig111672.2435.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCG
MCGILWDSAYPEGAELVK*
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mRNA from alignment at M-pyrifera_M_contig111672:18..224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111672.2435.1 ID=mRNA_M-pyrifera_M_contig111672.2435.1|Name=mRNA_M-pyrifera_M_contig111672.2435.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig111672:18..224+ (Macrocystis pyrifera P11B4 male)
GTTCGCAACTCTTGGAGCCCATTGTGGGGCGAGAACGGGTTCATCCGCGT GAAGCGCACTGCGGATGATGCCAAGCACTGTGGCACTGACAAGACCCCTC AGGATGGAACCGAGTGCGCGGGAGGTGCCAAGGAAACCACCGTGTGTGGC ATGTGTGGTATCCTTTGGGACTCTGCTTACCCAGAAGGAGCTGAGCTCGT CAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111672:18..224+

>mRNA_M-pyrifera_M_contig111672.2435.1 ID=mRNA_M-pyrifera_M_contig111672.2435.1|Name=mRNA_M-pyrifera_M_contig111672.2435.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig111672:18..224+ (Macrocystis pyrifera P11B4 male)
GTTCGCAACTCTTGGAGCCCATTGTGGGGCGAGAACGGGTTCATCCGCGT
GAAGCGCACTGCGGATGATGCCAAGCACTGTGGCACTGACAAGACCCCTC
AGGATGGAACCGAGTGCGCGGGAGGTGCCAAGGAAACCACCGTGTGTGGC
ATGTGTGGTATCCTTTGGGACTCTGCTTACCCAGAAGGAGCTGAGCTCGT
CAAGTAGGTTCGCAACTCTTGGAGCCCATTGTGGGGCGAGAACGGGTTCA
TCCGCGTGAAGCGCACTGCGGATGATGCCAAGCACTGTGGCACTGACAAG
ACCCCTCAGGATGGAACCGAGTGCGCGGGAGGTGCCAAGGAAACCACCGT
GTGTGGCATGTGTGGTATCCTTTGGGACTCTGCTTACCCAGAAGGAGCTG
AGCTCGTCAAGTAG
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