mRNA_M-pyrifera_M_contig111672.2435.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S0ZRU7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZRU7_NOCSC) HSP 1 Score: 91.7 bits (226), Expect = 2.380e-22 Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAELVK 204
VRNSW WGENG+IR+KR+ D CGTD TP DGT C+GG VCG CG+L+D YP GAE+VK
Sbjct: 51 VRNSWDTTWGENGYIRIKRSRHD---CGTDVTPSDGTGCSGGPATQHVCGECGLLFDVTYPLGAEIVK 115
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A5A8C7Y2_CAFRO (Uncharacterized protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8C7Y2_CAFRO) HSP 1 Score: 95.9 bits (237), Expect = 6.360e-22 Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAELVK 204
+RNSW+PLWGE+G+IR+KRT CG D+TPQDG CAGG + VCGMCG+L D+AYP G +L +
Sbjct: 308 IRNSWTPLWGESGYIRLKRTTS----CGIDRTPQDGNGCAGGPNDIKVCGMCGVLSDTAYPVGTKLAR 371
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A812U847_9DINO (CP1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U847_9DINO) HSP 1 Score: 91.7 bits (226), Expect = 2.160e-20 Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAEL 198
+RNSWSP WGE+G+IR+ R DA CG D TPQDG+ C G VCG CG+L D+AYP GA+L
Sbjct: 295 IRNSWSPTWGEHGYIRLARYGGDANKCGIDSTPQDGSACKGDTAPVKVCGQCGVLSDTAYPVGAKL 360
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S2WUJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUJ5_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 4.770e-20 Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEG 189
+RNSW P WGE G+IR++R D+A CG D TP DG C GG TVCG CGIL+D++YP G
Sbjct: 310 IRNSWGPAWGEQGYIRIQRVDDEANLCGVDVTPADGVGCEGGPDNVTVCGTCGILYDTSYPTG 372
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: F2UB19_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UB19_SALR5) HSP 1 Score: 90.1 bits (222), Expect = 1.080e-19 Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYP 183
VRNSW+P WGE+G+IR++RTA++ CG D TPQDG+ C GG + VCG CGIL+D+ YP
Sbjct: 331 VRNSWTPHWGESGYIRIRRTANEGGRCGMDITPQDGSGCKGGPDKVKVCGTCGILFDNVYP 391
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4WB60_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WB60_9DINO) HSP 1 Score: 87.4 bits (215), Expect = 1.120e-18 Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAEL 198
++NSW P WGE+G IR+ R DD++ CG D+ P+ GT C GG K+ VCGMCG+L+DSA P +L
Sbjct: 344 IQNSWGPTWGEHGHIRLLRREDDSEQCGIDRQPEVGTACEGGPKQVKVCGMCGVLYDSAVPHFKKL 409
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4T7I5_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4T7I5_9DINO) HSP 1 Score: 87.4 bits (215), Expect = 1.280e-18 Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYP 183
+RNSW P WGE+G IR+ R DD++ CG D+ P+ GT C GG K VCGMCG+L+DSA P
Sbjct: 375 IRNSWGPAWGEHGHIRLLRREDDSEQCGVDRKPEVGTACKGGPKVVKVCGMCGVLYDSAVP 435
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4W2B3_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W2B3_9DINO) HSP 1 Score: 87.4 bits (215), Expect = 1.310e-18 Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYP 183
+RNSW P WGE+G IR+ R DD++ CG D+ P+ GT C GG K VCGMCG+L+DSA P
Sbjct: 381 IRNSWGPAWGEHGHIRLLRREDDSEQCGVDRKPEVGTACKGGPKVVKVCGMCGVLYDSAVP 441
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S2VTM3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VTM3_9DINO) HSP 1 Score: 83.6 bits (205), Expect = 3.490e-18 Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPEGAELVK 204
VRNSW WGE+G+IR++R A A CG D+TP DGT CAGG TVCG CGIL+D+++P A +V+
Sbjct: 148 VRNSWGTSWGESGYIRLRREATPA--CGEDRTPLDGTGCAGGESVQTVCGACGILFDASHPIDAVVVQ 213
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Match: A0A7S4I5F1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I5F1_9EUKA) HSP 1 Score: 81.3 bits (199), Expect = 1.270e-17 Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGMCGILWDSAYPE 186
VRNSWSP WGE+G+IR+ R + CG D TPQ GT C GG TVCG CG+L+ +YPE
Sbjct: 119 VRNSWSPSWGEDGYIRLARATSNPP-CGVDSTPQAGTGCNGGPANVTVCGSCGVLYSVSYPE 179 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111672.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig111672.2435.1 >prot_M-pyrifera_M_contig111672.2435.1 ID=prot_M-pyrifera_M_contig111672.2435.1|Name=mRNA_M-pyrifera_M_contig111672.2435.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp VRNSWSPLWGENGFIRVKRTADDAKHCGTDKTPQDGTECAGGAKETTVCGback to top mRNA from alignment at M-pyrifera_M_contig111672:18..224+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig111672.2435.1 ID=mRNA_M-pyrifera_M_contig111672.2435.1|Name=mRNA_M-pyrifera_M_contig111672.2435.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig111672:18..224+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig111672:18..224+ >mRNA_M-pyrifera_M_contig111672.2435.1 ID=mRNA_M-pyrifera_M_contig111672.2435.1|Name=mRNA_M-pyrifera_M_contig111672.2435.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig111672:18..224+ (Macrocystis pyrifera P11B4 male)back to top |