mRNA_M-pyrifera_M_contig111668.2433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111668.2433.1
Unique NamemRNA_M-pyrifera_M_contig111668.2433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A5A8CNY2_CAFRO (AAA domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNY2_CAFRO)

HSP 1 Score: 167 bits (423), Expect = 1.040e-46
Identity = 77/121 (63.64%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            LVRETSRT+G FG R+R+ R LG L  EE GL+G+VL + L  R+   + A  NTR N APFRHM+FYGPPGTGKTMVAKRLA+++GLDYA+M+GGD+GPLGK+ VTE+HK+ DW   S R
Sbjct:  249 LVRETSRTAGTFGLRQRMKRALGMLPAEEVGLDGIVLEDKLSSRIVETASATTNTRRNGAPFRHMLFYGPPGTGKTMVAKRLARTSGLDYAVMSGGDIGPLGKDGVTELHKLLDWGETSKR 369          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A812LTK1_9DINO (Atad3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LTK1_9DINO)

HSP 1 Score: 152 bits (384), Expect = 1.620e-41
Identity = 74/124 (59.68%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFR---RRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            LVRE+S ++G F  R   +  +  +  +  E + L  V+LR+D+ DRV  L+ A  NTRAN AP+RHMMFYGPPGTGKTM+AKRLA+S+G+DYAIM+GGDVGPLGKEAVTE+H++FD+A RS R
Sbjct:  177 LVRESSASTGRFSLRGQAKHWFDSMRGVQREGESLTDVILRKDIADRVQRLAVATRNTRANGAPYRHMMFYGPPGTGKTMLAKRLARSSGMDYAIMSGGDVGPLGKEAVTELHRLFDYAERSQR 300          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A6G0Q5C4_9STRA (AAA domain-containing protein (Fragment) n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q5C4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.740e-37
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            LVRETSR++G FGF R L+R      ++E  L  VVLR  L  RV  ++R+  N   + AP+RH++ YGPPGTGKTMVAKRLA+++G+DYAI++GGDVGPLG +AVTE+H +F WA+ S R
Sbjct:   33 LVRETSRSAGAFGFFRSLFRRNAAKGQDE--LADVVLRNALETRVFEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPR 151          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A8J2WWN2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWN2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.960e-36
Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            LVRETSR S     R   +R L   AE    L+GVVL   L  R+G ++ A  NTRANAAPFRH++ +GPPGTGKT+ AK+LA+++GLDYAI+TGGDV PLG++AVTEIH++FDWA+ S R
Sbjct:  261 LVRETSRASPLDALRPAGWRRLLAPAEAGGALDGVVLEPALEKRLGHVAAATKNTRANAAPFRHVLLHGPPGTGKTLFAKKLARASGLDYAILTGGDVAPLGRDAVTEIHRLFDWAATSRR 381          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A0P1AST5_PLAHL (Atpase family aaa domain-containing protein 3-b-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AST5_PLAHL)

HSP 1 Score: 136 bits (342), Expect = 4.170e-35
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRS 357
            L+RETSRTSG  GF   L+R       E+  L GVVL++ L  RV  ++R+  N   + AP+RH++ YGPPGTGKTMVAKRLA+++G+DYAI++GGDVGPLG +AVTE+H +F WA+ S
Sbjct:  282 LIRETSRTSGMIGFINALWRRKP--VNEQNELAGVVLQKSLATRVLEIARSTRNAMQHGAPYRHLLLYGPPGTGKTMVAKRLARTSGMDYAILSGGDVGPLGSDAVTELHALFQWANSS 398          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A662XUE1_9STRA (AAA domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUE1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.840e-35
Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            LVRETSR+SG +GF R L+R     A+ +  L  VVLR+ L  RV  ++R+  N   + AP+RH++ YGPPGTGKTMVAKRLA+++G+DYAI++GGDVGPLG +AVTE+H +F WA+ S R
Sbjct:  406 LVRETSRSSGAWGFIRALFRRNS--AKGQNELADVVLRDALETRVFEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFHWANSSPR 524          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A329SI18_9STRA (AAA domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329SI18_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.760e-35
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            LVRETSR+SG FGF R L R      ++E  L  VVLR  L  RV  ++R+  N   + AP+RH++ YGPPGTGKTMVAKRLA+++G+DYAI++GGDVGPLG +AVTE+H +F WA+ S R
Sbjct:  398 LVRETSRSSGAFGFLRALIRRKPAKGQDE--LADVVLRSSLETRVLEIARSTRNAVLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANASPR 516          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: G4ZNZ6_PHYSP (AAA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZNZ6_PHYSP)

HSP 1 Score: 134 bits (338), Expect = 2.700e-34
Identity = 66/121 (54.55%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            LVRETSR++G FGF + L+R      ++E  L  VVLR  L  RV  ++R+  N   + AP+RH++ YGPPGTGKTMVAKRLA+++G+DYAI++GGDVGPLG +AVTE+H +F W + S R
Sbjct:  395 LVRETSRSAGAFGFLKALFRRNAAKGQDE--LADVVLRNALETRVFEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWTNSSPR 513          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: A0A6S7JE42_PARCT (ATPase family AAA domain-containing 3-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JE42_PARCT)

HSP 1 Score: 132 bits (333), Expect = 2.830e-34
Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            L+RETSR +     R  +     WL   +  L+G++L+  L  R+  +SRA ANT+ N   +R+++FYGPPGTGKTM AK LAK +G+DYAIMTGGD+ P+G+E VT +HKVFDWAS S +
Sbjct:  156 LIRETSRLTAVGAVRHPILMVKRWLLRPQDTLQGIILKSLLESRLQEISRATANTKRNGGVYRNLLFYGPPGTGKTMFAKSLAKHSGMDYAIMTGGDIAPMGREGVTAMHKVFDWASSSKK 276          
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Match: V9EJ63_PHYPR (AAA domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=V9EJ63_PHYPR)

HSP 1 Score: 134 bits (337), Expect = 3.730e-34
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSRAIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGPLGKEAVTEIHKVFDWASRSSR 363
            L+RETSR+SG FGF R L        ++E  L  VVLR  L  RV  ++R+  N   + AP+RH++ YGPPGTGKTMVAKRLA+++G+DYAI++GGDVGPLG +AVTE+H +F WA+ S R
Sbjct:  397 LIRETSRSSGAFGFLRALISQKPAKGQDE--LADVVLRSSLETRVLEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPR 515          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111668.2433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CNY2_CAFRO1.040e-4663.64AAA domain-containing protein n=2 Tax=Cafeteria ro... [more]
A0A812LTK1_9DINO1.620e-4159.68Atad3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A6G0Q5C4_9STRA6.740e-3756.20AAA domain-containing protein (Fragment) n=3 Tax=P... [more]
A0A8J2WWN2_9STRA2.960e-3658.68Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0P1AST5_PLAHL4.170e-3555.46Atpase family aaa domain-containing protein 3-b-li... [more]
A0A662XUE1_9STRA5.840e-3556.20AAA domain-containing protein n=2 Tax=Nothophytoph... [more]
A0A329SI18_9STRA7.760e-3557.02AAA domain-containing protein n=10 Tax=Phytophthor... [more]
G4ZNZ6_PHYSP2.700e-3454.55AAA domain-containing protein n=3 Tax=Phytophthora... [more]
A0A6S7JE42_PARCT2.830e-3451.24ATPase family AAA domain-containing 3-like (Fragme... [more]
V9EJ63_PHYPR3.730e-3455.37AAA domain-containing protein n=6 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111668contigM-pyrifera_M_contig111668:224..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue2.1e-29
Seed eggNOG ortholog67593.Physo142565
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3523)
EggNOG OGs3QCKH@4776,COG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.5115263-CDS-M-pyrifera_M_contig111668:223..5891622815629.5115263-CDS-M-pyrifera_M_contig111668:223..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111668 224..589 -
1692277495.3491807-CDS-M-pyrifera_M_contig111668:223..5891692277495.3491807-CDS-M-pyrifera_M_contig111668:223..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111668 224..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111668.2433.1prot_M-pyrifera_M_contig111668.2433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111668 224..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111668.2433.1

>prot_M-pyrifera_M_contig111668.2433.1 ID=prot_M-pyrifera_M_contig111668.2433.1|Name=mRNA_M-pyrifera_M_contig111668.2433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
LVRETSRTSGHFGFRRRLYRGLGWLAEEEQGLEGVVLREDLGDRVGILSR
AIANTRANAAPFRHMMFYGPPGTGKTMVAKRLAKSAGLDYAIMTGGDVGP
LGKEAVTEIHKVFDWASRSSR*
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mRNA from alignment at M-pyrifera_M_contig111668:224..589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111668.2433.1 ID=mRNA_M-pyrifera_M_contig111668.2433.1|Name=mRNA_M-pyrifera_M_contig111668.2433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig111668:224..589- (Macrocystis pyrifera P11B4 male)
TTGGTCCGTGAGACGAGTCGCACGAGCGGTCACTTTGGGTTTCGTCGTCG CTTGTACCGTGGGTTGGGGTGGTTGGCGGAGGAGGAGCAAGGGTTGGAAG GAGTGGTGTTGCGTGAGGATTTGGGGGATCGCGTGGGCATTCTCTCTCGC GCCATCGCCAACACGAGAGCCAACGCTGCTCCGTTTCGCCACATGATGTT CTACGGCCCGCCTGGCACAGGAAAAACAATGGTGGCAAAACGACTTGCAA AATCTGCAGGCTTGGACTACGCAATCATGACTGGCGGTGATGTGGGGCCA CTCGGGAAAGAGGCTGTCACAGAAATCCACAAAGTCTTCGACTGGGCATC GAGATCATCACGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111668:224..589-

>mRNA_M-pyrifera_M_contig111668.2433.1 ID=mRNA_M-pyrifera_M_contig111668.2433.1|Name=mRNA_M-pyrifera_M_contig111668.2433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig111668:224..589- (Macrocystis pyrifera P11B4 male)
TTGGTCCGTGAGACGAGTCGCACGAGCGGTCACTTTGGGTTTCGTCGTCG
CTTGTACCGTGGGTTGGGGTGGTTGGCGGAGGAGGAGCAAGGGTTGGAAG
GAGTGGTGTTGCGTGAGGATTTGGGGGATCGCGTGGGCATTCTCTCTCGC
GCCATCGCCAACACGAGAGCCAACGCTGCTCCGTTTCGCCACATGATGTT
CTACGGCCCGCCTGGCACAGGAAAAACAATGGTGGCAAAACGACTTGCAA
AATCTGCAGGCTTGGACTACGCAATCATGACTGGCGGTGATGTGGGGCCA
CTCGGGAAAGAGGCTGTCACAGAAATCCACAAAGTCTTCGACTGGGCATC
GAGATCATCACGGTAATTGGTCCGTGAGACGAGTCGCACGAGCGGTCACT
TTGGGTTTCGTCGTCGCTTGTACCGTGGGTTGGGGTGGTTGGCGGAGGAG
GAGCAAGGGTTGGAAGGAGTGGTGTTGCGTGAGGATTTGGGGGATCGCGT
GGGCATTCTCTCTCGCGCCATCGCCAACACGAGAGCCAACGCTGCTCCGT
TTCGCCACATGATGTTCTACGGCCCGCCTGGCACAGGAAAAACAATGGTG
GCAAAACGACTTGCAAAATCTGCAGGCTTGGACTACGCAATCATGACTGG
CGGTGATGTGGGGCCACTCGGGAAAGAGGCTGTCACAGAAATCCACAAAG
TCTTCGACTGGGCATCGAGATCATCACGGTAA
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