mRNA_M-pyrifera_M_contig111609.2410.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111609.2410.1
Unique NamemRNA_M-pyrifera_M_contig111609.2410.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A7S4HHM1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HHM1_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 5.880e-25
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    4 AMALWDFNGERESDLSFKRGDSITVIRRYSNGWWEGELNGCIGDFPCNFVELDE 165
            A+ALWDF+GERE+DL FK+GD I +I+R+ NGWWEGE NG IGDFPCN+VE++E
Sbjct:   58 AVALWDFHGERETDLQFKKGDHIMIIQRFDNGWWEGEFNGFIGDFPCNYVEVEE 111          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A8J4PZU9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PZU9_9MYCE)

HSP 1 Score: 72.0 bits (175), Expect = 3.930e-13
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 KAMALWDFNGERESDLSFKRGDSITVIRRYS-NGWWEGELNGCIGDFPCNFVE 156
            +  AL+D+ GE E DL+F  GD ITV+ +   NGWW+GELNG  G FPCNF+E
Sbjct:  429 QVKALYDYPGENEGDLAFNAGDIITVLDQSDPNGWWQGELNGVTGFFPCNFIE 481          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: L8HJF3_ACACA (SH3 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJF3_ACACA)

HSP 1 Score: 71.6 bits (174), Expect = 5.390e-13
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 KAMALWDFNGERESDLSFKRGDSITVIRRYSNGWWEGELNGCIGDFPCNFVE 156
            K  AL+D+ GE + +LSFK+GD ITV  +  +GWW+GELNG IG FP  +VE
Sbjct:  363 KVRALFDYTGETQPELSFKKGDIITVTEKDESGWWQGELNGVIGAFPSGWVE 414          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: L8GRH9_ACACA (SH3 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GRH9_ACACA)

HSP 1 Score: 71.6 bits (174), Expect = 5.490e-13
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 KAMALWDFNGERESDLSFKRGDSITVIRRYSN-GWWEGELNGCIGDFPCNFVELDE 165
            K +AL+DF G+ +  +SFKRGD+I V+++    GWWEGELNG +G FP N+V L E
Sbjct:  138 KVVALFDFTGDNDKKISFKRGDTINVLQKLQEEGWWEGELNGQVGLFPSNYVRLVE 193          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A507FAW4_9FUNG (SH3 domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507FAW4_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-12
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 KAMALWDFNGERESDLSFKRGDSITVIRRYS-NGWWEGELNGCIGDFPCNFVE 156
            +A AL+DF GER SDLSFK+GD IT+I+    N WW G LNG  GDFP N+V+
Sbjct:  308 RATALYDFIGERPSDLSFKKGDLITIIKAGGPNDWWVGSLNGKEGDFPGNYVQ 360          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A1S8W5S6_9FUNG (SH3 domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W5S6_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 2.460e-12
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 KAMALWDFNGERESDLSFKRGDSITVIRRYSN--GWWEGELNGCIGDFPCNFVELDE 165
            KA+AL+D++GER SDLSFK+GD I + +  S+   WW G+  G +GDFP N+VEL +
Sbjct:  359 KAVALFDYSGERSSDLSFKQGDVIWITQSTSSQEDWWTGKCGGQLGDFPANYVELQQ 415          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A1R2ASS5_9CILI (SH3 domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ASS5_9CILI)

HSP 1 Score: 69.3 bits (168), Expect = 2.630e-12
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    4 AMALWDFNGERESDLSFKRGDSITVIRRYSNGWWEGELNGCIGDFPCNFVEL 159
            A+AL+DF  ERE DL FKRGD I ++ +  +GWW G +N  IG FP NFV +
Sbjct:  275 AVALYDFEKEREEDLEFKRGDIIEILEKNESGWWIGRVNDKIGTFPFNFVNI 326          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A1Y3N448_PIRSE (SH3 domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N448_PIRSE)

HSP 1 Score: 63.9 bits (154), Expect = 3.490e-12
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   10 ALWDFNGERESDLSFKRGDSITVIRRYSNGWWEGELNGCIGDFPCNFV 153
            A +DFNG+ +S LSFK+GD I VI R  +GWW+G  NG  G FP N+V
Sbjct:    7 ARFDFNGQDDSQLSFKKGDIIQVISRLDSGWWDGICNGQRGWFPSNYV 54          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A1B7TJX9_9ASCO (DUF500-domain-containing protein n=1 Tax=Hanseniaspora valbyensis NRRL Y-1626 TaxID=766949 RepID=A0A1B7TJX9_9ASCO)

HSP 1 Score: 68.9 bits (167), Expect = 4.480e-12
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 KAMALWDFNGERESDLSFKRGDSITVIRRY--SNGWWEGELNGCIGDFPCNFVEL 159
            +A AL+ F+GE E DLSF++GD+I +I++   SN WW GELNG  G FP N+V++
Sbjct:  339 QARALFTFDGEEEGDLSFRKGDTINIIKKSESSNDWWTGELNGQEGIFPANYVQM 393          
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Match: A0A1Y3NH74_PIRSE (SH3 domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NH74_PIRSE)

HSP 1 Score: 63.5 bits (153), Expect = 4.530e-12
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   10 ALWDFNGERESDLSFKRGDSITVIRRYSNGWWEGELNGCIGDFPCNFVEL 159
            AL+DF+ ++ +DL FKRGD IT+I+   N WW G L+G  GDFP N+V++
Sbjct:    1 ALYDFDAQQPTDLGFKRGDIITLIKSDGN-WWRGTLDGQTGDFPSNYVQM 49          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111609.2410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HHM1_9EUKA5.880e-2570.37Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A8J4PZU9_9MYCE3.930e-1356.60Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
L8HJF3_ACACA5.390e-1355.77SH3 domain containing protein n=1 Tax=Acanthamoeba... [more]
L8GRH9_ACACA5.490e-1353.57SH3 domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A507FAW4_9FUNG1.600e-1260.38SH3 domain-containing protein n=2 Tax=Spizellomyce... [more]
A0A1S8W5S6_9FUNG2.460e-1252.63SH3 domain-containing protein n=1 Tax=Batrachochyt... [more]
A0A1R2ASS5_9CILI2.630e-1253.85SH3 domain-containing protein n=1 Tax=Stentor coer... [more]
A0A1Y3N448_PIRSE3.490e-1256.25SH3 domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A1B7TJX9_9ASCO4.480e-1252.73DUF500-domain-containing protein n=1 Tax=Hansenias... [more]
A0A1Y3NH74_PIRSE4.530e-1252.00SH3 domain-containing protein (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111609contigM-pyrifera_M_contig111609:374..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score68.9
Seed ortholog evalue9.8e-10
Seed eggNOG ortholog72019.SARC_00928T0
Preferred nameITSN1
KEGG koko:K20045
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001932,GO:0001934,GO:0002052,GO:0002791,GO:0002793,GO:0003674,GO:0005070,GO:0005085,GO:0005088,GO:0005089,GO:0005198,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005905,GO:0005938,GO:0006810,GO:0006897,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007186,GO:0007264,GO:0007275,GO:0007399,GO:0007416,GO:0007417,GO:0007420,GO:0007528,GO:0008021,GO:0008047,GO:0008104,GO:0008150,GO:0008284,GO:0008593,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010817,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0017016,GO:0017048,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030027,GO:0030100,GO:0030133,GO:0030139,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030425,GO:0030674,GO:0031252,GO:0031267,GO:0031323,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032947,GO:0033036,GO:0033267,GO:0033674,GO:0035556,GO:0035591,GO:0036062,GO:0036465,GO:0036477,GO:0040007,GO:0040008,GO:0042127,GO:0042325,GO:0042327,GO:0042734,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043167,GO:0043169,GO:0043195,GO:0043197,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043523,GO:0043524,GO:0043549,GO:0043679,GO:0044085,GO:0044093,GO:0044297,GO:0044306,GO:0044309,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045177,GO:0045179,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045746,GO:0045807,GO:0045859,GO:0045860,GO:0045927,GO:0045937,GO:0046872,GO:0046883,GO:0046887,GO:0048013,GO:0048488,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050808,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051056,GO:0051094,GO:0051124,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051716,GO:0051896,GO:0051897,GO:0051960,GO:0051962,GO:0060090,GO:0060123,GO:0060124,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0060548,GO:0060627,GO:0060998,GO:0060999,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070064,GO:0070382,GO:0071840,GO:0071944,GO:0072091,GO:0080090,GO:0090087,GO:0090276,GO:0090277,GO:0097060,GO:0097440,GO:0097447,GO:0097458,GO:0097708,GO:0098590,GO:0098657,GO:0098693,GO:0098772,GO:0098793,GO:0098794,GO:0099003,GO:0099503,GO:0099504,GO:0099568,GO:0099738,GO:0120025,GO:0120035,GO:0120038,GO:0150034,GO:1900006,GO:1900242,GO:1900244,GO:1901214,GO:1901215,GO:1902531,GO:1902533,GO:1902692,GO:1903421,GO:1903423,GO:1903530,GO:1903532,GO:1903859,GO:1903861,GO:2000026,GO:2000177,GO:2000179,GO:2000648,GO:2001286,GO:2001288
EggNOG free text desc.Intersectin 1 (SH3 domain protein)
EggNOG OGs38FEJ@33154,KOG1029@1,KOG1029@2759
COG Functional cat.T
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size204
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.3983269-UTR-M-pyrifera_M_contig111609:373..3791622815628.3983269-UTR-M-pyrifera_M_contig111609:373..379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111609 374..379 +
1692277494.8684032-UTR-M-pyrifera_M_contig111609:373..3791692277494.8684032-UTR-M-pyrifera_M_contig111609:373..379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111609 374..379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.4119196-CDS-M-pyrifera_M_contig111609:379..5771622815628.4119196-CDS-M-pyrifera_M_contig111609:379..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111609 380..577 +
1692277494.8862991-CDS-M-pyrifera_M_contig111609:379..5771692277494.8862991-CDS-M-pyrifera_M_contig111609:379..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111609 380..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111609.2410.1prot_M-pyrifera_M_contig111609.2410.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111609 380..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111609.2410.1

>prot_M-pyrifera_M_contig111609.2410.1 ID=prot_M-pyrifera_M_contig111609.2410.1|Name=mRNA_M-pyrifera_M_contig111609.2410.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MALWDFNGERESDLSFKRGDSITVIRRYSNGWWEGELNGCIGDFPCNFVE
LDEEAEEAEPEVPTLV
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mRNA from alignment at M-pyrifera_M_contig111609:374..577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111609.2410.1 ID=mRNA_M-pyrifera_M_contig111609.2410.1|Name=mRNA_M-pyrifera_M_contig111609.2410.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig111609:374..577+ (Macrocystis pyrifera P11B4 male)
AAGGCCATGGCGCTCTGGGACTTTAACGGAGAGAGAGAGTCCGATTTGAG CTTCAAGCGCGGCGACAGCATCACAGTCATCCGGCGCTACAGCAACGGCT GGTGGGAGGGCGAGCTCAACGGCTGCATCGGAGACTTCCCCTGCAACTTC GTCGAGCTGGACGAGGAGGCCGAGGAGGCCGAGCCCGAGGTGCCCACGCT CGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111609:374..577+

>mRNA_M-pyrifera_M_contig111609.2410.1 ID=mRNA_M-pyrifera_M_contig111609.2410.1|Name=mRNA_M-pyrifera_M_contig111609.2410.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig111609:374..577+ (Macrocystis pyrifera P11B4 male)
ATGGCGCTCTGGGACTTTAACGGAGAGAGAGAGTCCGATTTGAGCTTCAA
GCGCGGCGACAGCATCACAGTCATCCGGCGCTACAGCAACGGCTGGTGGG
AGGGCGAGCTCAACGGCTGCATCGGAGACTTCCCCTGCAACTTCGTCGAG
CTGGACGAGGAGGCCGAGGAGGCCGAGCCCGAGGTGCCCACGCTCGTCAT
GGCGCTCTGGGACTTTAACGGAGAGAGAGAGTCCGATTTGAGCTTCAAGC
GCGGCGACAGCATCACAGTCATCCGGCGCTACAGCAACGGCTGGTGGGAG
GGCGAGCTCAACGGCTGCATCGGAGACTTCCCCTGCAACTTCGTCGAGCT
GGACGAGGAGGCCGAGGAGGCCGAGCCCGAGGTGCCCACGCTCGTC
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