mRNA_M-pyrifera_M_contig111456.2378.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111456.2378.1
Unique NamemRNA_M-pyrifera_M_contig111456.2378.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111456.2378.1 vs. uniprot
Match: A0A7S1CAZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAZ4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.120e-12
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 1
Query:    1 ESHPFYCSLCMCHFSAAFAASCCAHCVCLECANELLSGTAVRCDTSTVLRLDSAAVAHEA-QCPHCMRKPLRLIPATDAGAVRRYSETPASAAARHQARM---VAASSWSPLRVGDSFETMQRKMLRFD 375
            + + F+C LCM H     A SCC + VC  C  + L G A     + ++ + S  +A  A  CPHC   P  L P     + R Y ++  + A +H  RM   VA    SPL+  DS+E +QRKMLRF+
Sbjct:   87 DIYKFFCPLCMFHLKEIHATSCCGNYVCASCGVQFLRGRAGL--PADLIDIPSHPIADAAVPCPHCNSSPWALAPVALDASARVYDDSGDAIARKHSQRMEQLVAERGHSPLKATDSYEALQRKMLRFE 213          
BLAST of mRNA_M-pyrifera_M_contig111456.2378.1 vs. uniprot
Match: A0A7S4J7V2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4J7V2_GUITH)

HSP 1 Score: 67.8 bits (164), Expect = 3.300e-11
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = 1
Query:    1 ESHPFYCSLCMCHFSAAFAASCCAHCVCLECANELLSGT-AVRCDTSTVLRLDSAAVAHEAQCPHCMRKPLRLIPATDAGAVRRYSETPASAAARHQ--ARM--VAASSWSPLRVGDSFETMQRKMLRFD 375
            + H F+C +CM +        CC+H +C +CA E+L    A R D       D + +  E  CP+C ++ LRL   +    VR Y ++P      H+  ARM  + +S+ SPLRVGD +  M +KML FD
Sbjct:   64 DEHVFFCPICMFYLDRMQRTVCCSHHICQDCAREMLDRIPAFRAD------YDQSKIEREISCPYCGQENLRLSTVSKETNVRSYDDSP-----MHELNARMLEIQSSTLSPLRVGDDYNAMIKKMLTFD 182          
BLAST of mRNA_M-pyrifera_M_contig111456.2378.1 vs. uniprot
Match: A0A7S1TVT2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVT2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.050e-11
Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    7 HPFYCSLCMCHFSAAFAASCCAHCVCLECANELLSGTAVRCDTSTVLRLDSAAVAHEAQCPHCMRKPLRLIPATDAGAVRRYSETPASAAARHQARMVAASSWSPLRVGDSFETMQRKMLRFD 375
            + +YC LCMCH      ASCC H +C +C +++L    +       +  D   +  +  CPHCM+  L L    +   VR Y +     A+   A   A    SP+++GDSF+ ++RKM  ++
Sbjct:  126 YQYYCPLCMCHHKKILEASCCKHYMCHQCTHDMLCAKGM----DAAIHFDPGNLPVQMDCPHCMQPNLALNVVAEGNQVRTYFDEEEGEASTSTA---AKGPESPIKIGDSFDAIRRKMFTYE 241          
BLAST of mRNA_M-pyrifera_M_contig111456.2378.1 vs. uniprot
Match: A0A7S2FWN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWN0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.680e-10
Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = 1
Query:    1 ESHPFYCSLCMCHFSAAFAASCCAHCVCLECANELLSGTAVRCDTSTVLRLDSAAVAHEAQCPHCM--RKPLRLIPATDAGAVRRYSETPASAAA------RHQARMVAASSWSPLRVGDSFETMQRKMLRFD 375
            ++H F+C LCM  F A FA +CC +  C EC    LSG     D    L    A++     CPHC   R  L+L P +     R Y + P + A        +   +    + SPL+VGDS+E + RKML+FD
Sbjct:  100 DAHRFFCPLCMGWFKATFATTCCGNYCCSECTMAYLSGREGLADP---LHRLPASLPGGVPCPHCATDRPGLQLRPVSVTAEARAYEDEPVAVAVVGGSGVGNTPSVRREDAPSPLKVGDSYEALMRKMLKFD 229          
BLAST of mRNA_M-pyrifera_M_contig111456.2378.1 vs. uniprot
Match: A0A7S0V3N1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V3N1_9CRYP)

HSP 1 Score: 53.5 bits (127), Expect = 7.250e-6
Identity = 45/148 (30.41%), Postives = 65/148 (43.92%), Query Frame = 1
Query:    1 ESHP---FYCSLCMCHFSAAFAASCCAHCVCLECANEL--------LSGTAVRCDTSTVLRLDSAAVAHEAQCPHCMRKPL---RLIPATDAGAVRRYSETPA------SAAARHQARMVAASSW---SPLRVGDSFETMQRKMLRFD 375
            ES P    YC +CM +++  +   CC H +C  C  E+        LSG     D ++V             CPHC  + L   R+  A   G  RRY ++P       S  AR    + +       SPL++GD++E M +KML FD
Sbjct:  108 ESTPQYCLYCPICMYYYAETYRTKCCGHHICANCTAEMVWRSHRYELSGEPSEEDIASV------------SCPHCSAEALHVSRIAVADSGGDYRRYEDSPGFNKTGGSRRARTGGTVPSGPGSVAPSPLKIGDTYENMMKKMLTFD 243          
BLAST of mRNA_M-pyrifera_M_contig111456.2378.1 vs. uniprot
Match: A0A6U4TS67_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4TS67_HEMAN)

HSP 1 Score: 52.8 bits (125), Expect = 1.770e-5
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1
Query:    1 ESHP---FYCSLCMCHFSAAFAASCCAHCVCLECANELLSGTAVRCDTSTVLRLDSAAVAHEAQCPHCMRKPLRL--IPATDAGA-VRRYSETPA--SAAARHQARMV--------AASSWSPLRVGDSFETMQRKMLRFD 375
            ES P    YC +CM +++  +   CC H +C  C  E++     R + S  L  +  A      CPHC  + L++  I   D G   RRY ++P        H+ R          A+ + SPL++GD++E M +KML +D
Sbjct:  108 ESTPQYRLYCPICMYYYAETYRTRCCNHHICANCTTEMVWRNH-RANNSVELTDEEIA---SMACPHCSSEALKVNRITVLDGGGDYRRYEDSPGFNKTGGAHRPRTGTTPIGTGGASVAPSPLKIGDTYENMMKKMLTYD 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111456.2378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S1CAZ4_9STRA4.120e-1236.43Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4J7V2_GUITH3.300e-1135.38Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S1TVT2_9STRA9.050e-1130.89Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FWN0_9STRA2.680e-1035.34Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S0V3N1_9CRYP7.250e-630.41Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6U4TS67_HEMAN1.770e-530.50Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111456contigM-pyrifera_M_contig111456:32..476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111456.2378.1prot_M-pyrifera_M_contig111456.2378.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111456 32..446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.740248-CDS-M-pyrifera_M_contig111456:31..3601622815626.740248-CDS-M-pyrifera_M_contig111456:31..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111456 32..360 -
1692277494.098728-CDS-M-pyrifera_M_contig111456:31..3601692277494.098728-CDS-M-pyrifera_M_contig111456:31..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111456 32..360 -
1622815626.751319-CDS-M-pyrifera_M_contig111456:430..4461622815626.751319-CDS-M-pyrifera_M_contig111456:430..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111456 431..446 -
1692277494.1072786-CDS-M-pyrifera_M_contig111456:430..4461692277494.1072786-CDS-M-pyrifera_M_contig111456:430..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111456 431..446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.7615767-UTR-M-pyrifera_M_contig111456:446..4761622815626.7615767-UTR-M-pyrifera_M_contig111456:446..476Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111456 447..476 -
1692277494.1152103-UTR-M-pyrifera_M_contig111456:446..4761692277494.1152103-UTR-M-pyrifera_M_contig111456:446..476Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111456 447..476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111456.2378.1

>prot_M-pyrifera_M_contig111456.2378.1 ID=prot_M-pyrifera_M_contig111456.2378.1|Name=mRNA_M-pyrifera_M_contig111456.2378.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MCHFSAAFAASCCAHCVCLECANELLSGTAVRCDTSTVLRLDSAAVAHEA
QCPHCMRKPLRLIPATDAGAVRRYSETPASAAARHQARMVAASSWSPLRV
GDSFETMQRKMLRFD
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mRNA from alignment at M-pyrifera_M_contig111456:32..476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111456.2378.1 ID=mRNA_M-pyrifera_M_contig111456.2378.1|Name=mRNA_M-pyrifera_M_contig111456.2378.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=445bp|location=Sequence derived from alignment at M-pyrifera_M_contig111456:32..476- (Macrocystis pyrifera P11B4 male)
GAGTCCCACCCGTTCTATTGCTCATTGTGCATGTGTCACTTCTCAGGTAC GCCACTGCTGCTCACCAATTGCACATCCAGCTGTGAAGTCTCACACATTC CGCCACCGATGTGCAGCCGCGTTTGCCGCATCGTGCTGCGCGCACTGTGT GTGCTTGGAGTGCGCAAATGAGCTTCTTTCGGGTACAGCAGTGCGCTGTG ACACTTCTACAGTTCTTCGGCTTGACTCTGCAGCCGTCGCGCACGAGGCG CAGTGCCCACACTGCATGCGCAAACCGTTGCGCCTCATCCCTGCCACGGA CGCTGGAGCCGTCCGCCGATACAGCGAGACTCCTGCAAGTGCAGCGGCGA GGCATCAAGCACGTATGGTTGCCGCCTCTTCGTGGTCCCCTCTGCGCGTT GGCGACTCGTTCGAAACCATGCAGCGCAAGATGCTGCGATTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111456:32..476-

>mRNA_M-pyrifera_M_contig111456.2378.1 ID=mRNA_M-pyrifera_M_contig111456.2378.1|Name=mRNA_M-pyrifera_M_contig111456.2378.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig111456:32..476- (Macrocystis pyrifera P11B4 male)
ATGTGTCACTTCTCAGATGTGTCACTTCTCAGCCGCGTTTGCCGCATCGT
GCTGCGCGCACTGTGTGTGCTTGGAGTGCGCAAATGAGCTTCTTTCGGGT
ACAGCAGTGCGCTGTGACACTTCTACAGTTCTTCGGCTTGACTCTGCAGC
CGTCGCGCACGAGGCGCAGTGCCCACACTGCATGCGCAAACCGTTGCGCC
TCATCCCTGCCACGGACGCTGGAGCCGTCCGCCGATACAGCGAGACTCCT
GCAAGTGCAGCGGCGAGGCATCAAGCACGTATGGTTGCCGCCTCTTCGTG
GTCCCCTCTGCGCGTTGGCGACTCGTTCGAAACCATGCAGCGCAAGATGC
TGCGATTCGACCCGCGTTTGCCGCATCGTGCTGCGCGCACTGTGTGTGCT
TGGAGTGCGCAAATGAGCTTCTTTCGGGTACAGCAGTGCGCTGTGACACT
TCTACAGTTCTTCGGCTTGACTCTGCAGCCGTCGCGCACGAGGCGCAGTG
CCCACACTGCATGCGCAAACCGTTGCGCCTCATCCCTGCCACGGACGCTG
GAGCCGTCCGCCGATACAGCGAGACTCCTGCAAGTGCAGCGGCGAGGCAT
CAAGCACGTATGGTTGCCGCCTCTTCGTGGTCCCCTCTGCGCGTTGGCGA
CTCGTTCGAAACCATGCAGCGCAAGATGCTGCGATTCGAC
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