mRNA_M-pyrifera_M_contig111443.2375.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111443.2375.1
Unique NamemRNA_M-pyrifera_M_contig111443.2375.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: A0A7S4HUH9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HUH9_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.170e-16
Identity = 48/130 (36.92%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   37 IHDVACALKQYVNMQDVPLCTFEEYDNFIAVASEKVADVSTEQVAR---LKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPMEFTAEYVFNVGKQCQLVEIMIAHADAL 417
            +H VA ALK Y+   +V +   + Y+ F+AV       ++TE+ AR   +K +LA+LP  H  ++ + + +L ++SS+    +  M   NCGI+FGPV FRP+ F   Y+ NV +Q Q VE ++ H D L
Sbjct:  102 VHTVATALKGYLTSSEVSVVPPKLYEVFLAV-------MNTEEDARVVYMKNLLAQLPENHYNVLKLLLSYLLVISSNHE--VNKMTLDNCGIIFGPVLFRPVVFDTSYILNVPRQSQTVEFLLQHFDEL 222          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: A0A0L8HP92_OCTBM (Rho-GAP domain-containing protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8HP92_OCTBM)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-14
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    1 ADRSMVPMDPEAIHDVACALKQYVNMQDVPLCTFEEYDNFIAVASE-KVADVSTEQVA-RLKEVLARLPPLHCRIMHMCVRFLQMVS--SDEHRHLTCMNRTNCGIVFGPVFFRPMEFTA-EYVFNVGKQCQLVEIMIAHADALFG 423
            AD   V ++ +  + +   LK Y+     PL TF+ Y  FI  A E     +S E++  +LKE++ +LPP + +   + +  LQ VS  SDE++    MN +N GIVFGP   RP E T    + +   Q   VE++I HAD LFG
Sbjct:  676 ADPDGVDLEQQHPNVITSVLKMYLRQLPEPLLTFDAYGGFIQTAKEINAGTISGEKIIEKLKELIGQLPPANSKTTSLLISHLQQVSTESDENQ----MNASNLGIVFGPTLLRPYEGTPLSSLVDTYYQTMSVELLIKHADELFG 817          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: UPI0015ABD389 (GEM-interacting protein isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ABD389)

HSP 1 Score: 74.3 bits (181), Expect = 1.430e-12
Identity = 50/143 (34.97%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   40 HDVACALKQYVNMQDVPLCTFEEYDNFIAVA------SEKVADVSTEQVAR-----LKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPM---EFTAEYVFNVGKQCQLVEIMIAHADALFGP 426
            HDV   LK +      PL TF+ Y +FI V       +EK     T  +       L+E+L RLPP +   +H  V  L  VS +   +   M+  N GIVFGP   RP+   + +   +     Q QLVE +I H  ALFGP
Sbjct:  713 HDVTSVLKHFFKELPEPLLTFDLYHDFITVGKNIQRLAEKEPSAQTPGIVEDITLSLRELLRRLPPYNYSTLHHMVTHLHRVSENYEENK--MSVGNLGIVFGPTLLRPLVSGDMSMSTLLETSYQAQLVEFLITHHSALFGP 853          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: UPI0015AF83E2 (rho GTPase-activating protein 45-like isoform X1 n=3 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AF83E2)

HSP 1 Score: 73.6 bits (179), Expect = 2.660e-12
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = 1
Query:   22 MDPEAIHD--VACALKQYVNMQDVPLCTFEEYDNFIAVASEKVADVSTEQVAR------LKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPMEFTAEY--VFNVGKQCQLVEIMIAHADALFGPAAKETAT 447
            +D + +H   V+  LK Y+     PL T+  Y +FI VA +  A  S + +A       L++++ RLPP+H   +   +  LQ VS  +H     M  +N GIVFGP   R  E +A    + +   Q +++E++I HAD +FG +AK  A+
Sbjct:  568 VDLDGVHPNVVSNVLKLYLRQLPEPLLTYRLYPDFIKVAKDYPAQKSDDNLATVGAVEDLRKLVQRLPPVHLSTLACLMHHLQKVS--QHSDHNNMPPSNLGIVFGPTLLRTSEGSASLSSLVDTVHQTRVIELLILHADEIFGASAKSPAS 717          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: UPI001C892233 (LOW QUALITY PROTEIN: GEM-interacting protein n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C892233)

HSP 1 Score: 71.6 bits (174), Expect = 1.230e-11
Identity = 47/148 (31.76%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   40 HDVACALKQYVNMQDVPLCTFEEYDNFIAVASE-----------KVADVSTEQVARLKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPM---EFTAEYVFNVGKQCQLVEIMIAHADALFGPAAKET 441
            HD++  LK +      PL TF+ Y++FI V  E           + A + T  VA+LKE++ RLP  +   +   +  L  V+  EH     M+  N GIVFGP   RP+   + +   +     Q  LVE MI++ + +FGPA + +
Sbjct:  652 HDISSVLKHFFKELPEPLLTFDLYNDFIGVGKEIQRLSEKDHASETAGIVTSTVAKLKELIGRLPLCNYNAVQHMMAHLNRVA--EHYEDNKMSPGNLGIVFGPTLLRPLVSGDVSMIALLETSYQALLVEFMISNYEHIFGPATRSS 797          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: A0A0P5C4R7_9CRUS (Minor histocompatibility protein HA-1 n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5C4R7_9CRUS)

HSP 1 Score: 63.5 bits (153), Expect = 8.190e-9
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   46 VACALKQYVNMQDVPLCTFEEYDNFIAVASEKV---ADVSTEQVARLKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPMEFTAEY--VFNVGKQCQLVEIMIAHADALFGPAAKETATATPA 459
            VA  LK Y+      L T   Y +FI +A E     AD S   +  LKE++ +LP  H   +   +  L+ V++++  +   M  +N GIVFGP   R  E +A    + +   Q +++E++I HAD +FGP    T+  T A
Sbjct:  927 VANVLKLYLRQLPEALLTSRLYPDFIRIAREWTSPSADSSAPGLEELKELVHKLPRHHYATLAFLMHHLKRVAAEQESNN--MPASNLGIVFGPTLLRTSEGSATLSSLVDTVHQTKVIELLIEHADTIFGPPDPTTSLMTTA 1067          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: UPI001EE0B757 (rho GTPase-activating protein 45-like isoform X1 n=22 Tax=Daphnia TaxID=6668 RepID=UPI001EE0B757)

HSP 1 Score: 61.6 bits (148), Expect = 3.840e-8
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 1
Query:   46 VACALKQYVNMQDVPLCTFEEYDNFIAVASEKV---ADVSTEQVARLKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPMEFTAEY--VFNVGKQCQLVEIMIAHADALFGP 426
            VA  LK Y+      L T   Y +FI VA E     AD S   V  L E++ +LP  H   +   +  L+ VS +   +   M  +N GIVFGP   R  E +A    + +   Q +++E++I HAD +FGP
Sbjct:  998 VANVLKLYLRQLPEALLTSRLYPDFIRVAREWTGPSADTSAPGVEELNELVHKLPRHHYATLAFLMHHLKRVSGECESNN--MPASNLGIVFGPTLLRTSEGSATLSSLVDTVHQTKVIELLIEHADIIFGP 1127          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: A0A8J2S651_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2S651_9CRUS)

HSP 1 Score: 60.8 bits (146), Expect = 7.110e-8
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   46 VACALKQYVNMQDVPLCTFEEYDNFIAVASEKV---ADVSTEQVARLKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPMEFTAEY--VFNVGKQCQLVEIMIAHADALFGP 426
            VA  LK Y+      L T   Y +FI VA E     AD S   +  L E++ +LP  H   +   +  L+ VS++   +   M  +N GIVFGP   R  E +A    + +   Q +++E++I HA+ +FGP
Sbjct:  990 VANVLKLYLRQLPEALLTSRLYPDFIRVAREWTSPSADTSAPGLEELNELVHKLPRHHYATLAFLMHHLKRVSAEYESNN--MPASNLGIVFGPTLLRTSEGSASLSSLVDTVHQTKVIELLIEHAETIFGP 1119          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: A0A1S3FEB2_DIPOR (rho GTPase-activating protein 31 n=3 Tax=Dipodomys TaxID=10016 RepID=A0A1S3FEB2_DIPOR)

HSP 1 Score: 55.5 bits (132), Expect = 5.210e-6
Identity = 42/135 (31.11%), Postives = 62/135 (45.93%), Query Frame = 1
Query:   37 IHDVACALKQYVNMQDVPLCTFEEYDNFIAVASEKVADVSTE-QVARLKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPMEFTAE------YVFNVGKQCQLVEIMIAHADALF 420
            IH V    K Y      PL T+E YD F    +E V+    E Q+AR++ V+ +LPP H R +   +R L  ++S   R  T M+  N  +V+ P   R  E  A           V  Q  ++E ++ H D +F
Sbjct:   88 IHCVGSLCKLYFRELPNPLLTYELYDKF----TEAVSHCQEEGQLARIQNVIQKLPPSHYRTLEYLIRHLTHIASFSSR--TNMHARNLALVWAPNLLRSKEIEASGCSGDAAFLAVRVQQVVIEFILNHVDQIF 216          
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Match: UPI0020198C39 (rho GTPase-activating protein 31 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI0020198C39)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-5
Identity = 41/135 (30.37%), Postives = 62/135 (45.93%), Query Frame = 1
Query:   37 IHDVACALKQYVNMQDVPLCTFEEYDNFIAVASEKVADVSTE-QVARLKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVFGPVFFRPMEFTAE------YVFNVGKQCQLVEIMIAHADALF 420
            IH V    K Y      PL T+E YD F    +E V+    E Q+AR++ V+ +LPP H R +   +R L  ++S   +  T M+  N  +V+ P   R  E  A           V  Q  ++E ++ H D +F
Sbjct:   88 IHCVGSLCKLYFRELPNPLLTYELYDKF----TEAVSHCQEEGQLARIQNVIQKLPPSHYRTLEYLIRHLTHIASFSSK--TNMHARNLALVWAPNLLRSKEIEASGCSGDAAFLAVRVQQVVIEFILNHVDQIF 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111443.2375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S4HUH9_9EUKA1.170e-1636.92Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A0L8HP92_OCTBM1.370e-1436.30Rho-GAP domain-containing protein n=1 Tax=Octopus ... [more]
UPI0015ABD3891.430e-1234.97GEM-interacting protein isoform X1 n=2 Tax=Anguill... [more]
UPI0015AF83E22.660e-1232.89rho GTPase-activating protein 45-like isoform X1 n... [more]
UPI001C8922331.230e-1131.76LOW QUALITY PROTEIN: GEM-interacting protein n=1 T... [more]
A0A0P5C4R7_9CRUS8.190e-932.17Minor histocompatibility protein HA-1 n=3 Tax=Daph... [more]
UPI001EE0B7573.840e-834.09rho GTPase-activating protein 45-like isoform X1 n... [more]
A0A8J2S651_9CRUS7.110e-832.58Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A1S3FEB2_DIPOR5.210e-631.11rho GTPase-activating protein 31 n=3 Tax=Dipodomys... [more]
UPI0020198C391.310e-530.37rho GTPase-activating protein 31 n=1 Tax=Perognath... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111443contigM-pyrifera_M_contig111443:64..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score74.3
Seed ortholog evalue5.3e-11
Seed eggNOG ortholog6500.XP_005105114.1
Preferred nameARHGAP29
KEGG koko:K20644
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007266,GO:0008047,GO:0008150,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016192,GO:0019904,GO:0023051,GO:0023052,GO:0030141,GO:0030165,GO:0030234,GO:0030695,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035556,GO:0035578,GO:0036230,GO:0042119,GO:0042582,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051716,GO:0060205,GO:0060589,GO:0065007,GO:0065009,GO:0070013,GO:0097708,GO:0098772,GO:0099503,GO:1902531
EggNOG free text desc.GTPase activator activity
EggNOG OGs38DJM@33154,3BB6R@33208,3CUHS@33213,KOG1453@1,KOG1453@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size459
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.6030962-CDS-M-pyrifera_M_contig111443:63..5101622815626.6030962-CDS-M-pyrifera_M_contig111443:63..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111443 64..510 -
1692277494.0490005-CDS-M-pyrifera_M_contig111443:63..5101692277494.0490005-CDS-M-pyrifera_M_contig111443:63..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111443 64..510 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.6138494-UTR-M-pyrifera_M_contig111443:510..5221622815626.6138494-UTR-M-pyrifera_M_contig111443:510..522Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111443 511..522 -
1692277494.0610602-UTR-M-pyrifera_M_contig111443:510..5221692277494.0610602-UTR-M-pyrifera_M_contig111443:510..522Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111443 511..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111443.2375.1prot_M-pyrifera_M_contig111443.2375.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111443 64..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111443.2375.1

>prot_M-pyrifera_M_contig111443.2375.1 ID=prot_M-pyrifera_M_contig111443.2375.1|Name=mRNA_M-pyrifera_M_contig111443.2375.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MVPMDPEAIHDVACALKQYVNMQDVPLCTFEEYDNFIAVASEKVADVSTE
QVARLKEVLARLPPLHCRIMHMCVRFLQMVSSDEHRHLTCMNRTNCGIVF
GPVFFRPMEFTAEYVFNVGKQCQLVEIMIAHADALFGPAAKETATATPA
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mRNA from alignment at M-pyrifera_M_contig111443:64..522-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111443.2375.1 ID=mRNA_M-pyrifera_M_contig111443.2375.1|Name=mRNA_M-pyrifera_M_contig111443.2375.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig111443:64..522- (Macrocystis pyrifera P11B4 male)
GCAGACCGCTCGATGGTGCCCATGGACCCCGAGGCCATCCATGACGTGGC GTGTGCGCTGAAGCAGTACGTGAACATGCAGGACGTGCCGCTGTGCACCT TCGAGGAGTACGACAACTTCATCGCAGTGGCGAGCGAGAAGGTCGCCGAC GTGAGCACGGAGCAGGTGGCGCGGCTGAAGGAGGTGCTGGCGCGCCTGCC GCCGCTGCACTGCCGCATCATGCACATGTGTGTGCGCTTCCTGCAGATGG TGAGCAGCGACGAGCACCGGCACCTCACCTGCATGAACCGCACCAACTGC GGCATTGTCTTCGGCCCCGTCTTCTTCAGGCCCATGGAGTTCACTGCTGA GTACGTCTTCAACGTGGGCAAGCAGTGCCAGCTCGTCGAGATCATGATCG CCCACGCAGACGCCCTCTTCGGCCCCGCTGCCAAGGAGACCGCCACCGCC ACCCCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111443:64..522-

>mRNA_M-pyrifera_M_contig111443.2375.1 ID=mRNA_M-pyrifera_M_contig111443.2375.1|Name=mRNA_M-pyrifera_M_contig111443.2375.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig111443:64..522- (Macrocystis pyrifera P11B4 male)
ATGGTGCCCATGGACCCCGAGGCCATCCATGACGTGGCGTGTGCGCTGAA
GCAGTACGTGAACATGCAGGACGTGCCGCTGTGCACCTTCGAGGAGTACG
ACAACTTCATCGCAGTGGCGAGCGAGAAGGTCGCCGACGTGAGCACGGAG
CAGGTGGCGCGGCTGAAGGAGGTGCTGGCGCGCCTGCCGCCGCTGCACTG
CCGCATCATGCACATGTGTGTGCGCTTCCTGCAGATGGTGAGCAGCGACG
AGCACCGGCACCTCACCTGCATGAACCGCACCAACTGCGGCATTGTCTTC
GGCCCCGTCTTCTTCAGGCCCATGGAGTTCACTGCTGAGTACGTCTTCAA
CGTGGGCAAGCAGTGCCAGCTCGTCGAGATCATGATCGCCCACGCAGACG
CCCTCTTCGGCCCCGCTGCCAAGGAGACCGCCACCGCCACCCCCGCCATG
GTGCCCATGGACCCCGAGGCCATCCATGACGTGGCGTGTGCGCTGAAGCA
GTACGTGAACATGCAGGACGTGCCGCTGTGCACCTTCGAGGAGTACGACA
ACTTCATCGCAGTGGCGAGCGAGAAGGTCGCCGACGTGAGCACGGAGCAG
GTGGCGCGGCTGAAGGAGGTGCTGGCGCGCCTGCCGCCGCTGCACTGCCG
CATCATGCACATGTGTGTGCGCTTCCTGCAGATGGTGAGCAGCGACGAGC
ACCGGCACCTCACCTGCATGAACCGCACCAACTGCGGCATTGTCTTCGGC
CCCGTCTTCTTCAGGCCCATGGAGTTCACTGCTGAGTACGTCTTCAACGT
GGGCAAGCAGTGCCAGCTCGTCGAGATCATGATCGCCCACGCAGACGCCC
TCTTCGGCCCCGCTGCCAAGGAGACCGCCACCGCCACCCCCGCC
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