mRNA_M-pyrifera_M_contig111252.2351.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111252.2351.1
Unique NamemRNA_M-pyrifera_M_contig111252.2351.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A2E9VWC7_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E9VWC7_9PLAN)

HSP 1 Score: 78.6 bits (192), Expect = 4.920e-18
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 PTVSIPELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLRE 156
            P +   E+RKQISIFVP+SDWK IR EAA+ RIPMTELCR+WM P L RL+E
Sbjct:    3 PEIQRSEMRKQISIFVPMSDWKKIRHEAARNRIPMTELCRRWMRPELERLQE 54          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: UPI001423DBE7 (hypothetical protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001423DBE7)

HSP 1 Score: 77.0 bits (188), Expect = 1.950e-17
Identity = 35/49 (71.43%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    7 VSIPELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLR 153
            +S  E+RKQ+SIF+PLSDWKAIR EAA+QRIPM+ELCR+WM+P + RLR
Sbjct:    1 MSTREIRKQVSIFMPLSDWKAIRFEAARQRIPMSELCRRWMNPDMERLR 49          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A3B1DGT6_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DGT6_9ZZZZ)

HSP 1 Score: 76.6 bits (187), Expect = 2.990e-17
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   22 LRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLREQ 159
            LRKQISIF+PLSDWKAIR EAA+ +IPMTELCR+WM P LT+L+++
Sbjct:    6 LRKQISIFIPLSDWKAIRMEAARMKIPMTELCRRWMKPKLTKLKKK 51          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A5C5XL68_9PLAN (Uncharacterized protein n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5XL68_9PLAN)

HSP 1 Score: 75.9 bits (185), Expect = 6.050e-17
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1
Query:   19 ELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLRE 156
            E+RKQISIFVP+SDWK IR EAA+ RIPMTELCR+WM P + RL+E
Sbjct:    9 EMRKQISIFVPMSDWKKIRHEAARNRIPMTELCRRWMRPEIERLQE 54          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A3E0Q470_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q470_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.650e-16
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   19 ELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLREQTTQ 168
            E+RKQISIFVP+SDW+ IRQEAA++RIP+TELCR+WM P +  LR++  Q
Sbjct:    5 EIRKQISIFVPISDWRVIRQEAARRRIPITELCRRWMRPEIAVLRKKAEQ 54          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A517ZE90_9PLAN (Uncharacterized protein n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZE90_9PLAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.360e-15
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   19 ELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLREQTTQRA 174
            E+RKQIS F+PLSDWKA+R EAA+QR+P+T LCR+W+ P L R+R    Q A
Sbjct:    5 EVRKQISFFLPLSDWKALRDEAARQRVPITALCRRWIDPELVRIRSSAPQSA 56          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A5C6BU33_9PLAN (Uncharacterized protein n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A5C6BU33_9PLAN)

HSP 1 Score: 71.6 bits (174), Expect = 2.540e-15
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   19 ELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLREQT 162
            ELRKQIS+FVPLS WKAIRQEAA++ IPMTELCR+WM   L  L +Q+
Sbjct:    5 ELRKQISLFVPLSHWKAIRQEAARRNIPMTELCRRWMKSELAALLDQS 52          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A518CI56_9PLAN (Uncharacterized protein n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CI56_9PLAN)

HSP 1 Score: 69.7 bits (169), Expect = 1.660e-14
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   16 PELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLREQ 159
            P  RKQISIF+P+ DWK +R EAA+  IPMTELCR+W+ P L RL EQ
Sbjct:    4 PPRRKQISIFMPVEDWKEMRMEAARHHIPMTELCRRWLRPELDRLHEQ 51          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A5C5X7H6_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X7H6_9PLAN)

HSP 1 Score: 68.9 bits (167), Expect = 2.970e-14
Identity = 29/49 (59.18%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   19 ELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLREQTT 165
            ELRKQISIF+P+SDW+ +RQ AA+++IP+TELCR+W+ P L +L+ +T+
Sbjct:    6 ELRKQISIFLPISDWRLLRQAAAERQIPITELCREWIRPGLEQLQFETS 54          
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Match: A0A1I3K030_9PLAN (Uncharacterized protein n=2 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3K030_9PLAN)

HSP 1 Score: 69.7 bits (169), Expect = 4.850e-14
Identity = 29/49 (59.18%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   19 ELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRLREQTT 165
            EL+KQISIF+P+SDW+A+RQEAA+Q++P+TELCR+W+ P +++L    T
Sbjct:   44 ELKKQISIFLPVSDWRALRQEAARQQVPITELCRRWIVPEISKLPSPVT 92          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111252.2351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2E9VWC7_9PLAN4.920e-1869.23Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
UPI001423DBE71.950e-1771.43hypothetical protein n=1 Tax=Rubinisphaera sp. JC6... [more]
A0A3B1DGT6_9ZZZZ2.990e-1773.91Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A5C5XL68_9PLAN6.050e-1773.91Uncharacterized protein n=1 Tax=Rubinisphaera ital... [more]
A0A3E0Q470_9BACT1.650e-1666.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517ZE90_9PLAN1.360e-1561.54Uncharacterized protein n=1 Tax=Maioricimonas rari... [more]
A0A5C6BU33_9PLAN2.540e-1570.83Uncharacterized protein n=3 Tax=Symmachiella TaxID... [more]
A0A518CI56_9PLAN1.660e-1464.58Uncharacterized protein n=1 Tax=Polystyrenella lon... [more]
A0A5C5X7H6_9PLAN2.970e-1459.18Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
A0A1I3K030_9PLAN4.850e-1459.18Uncharacterized protein n=2 Tax=Planctomicrobium p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111252contigM-pyrifera_M_contig111252:241..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.6261647-CDS-M-pyrifera_M_contig111252:240..4201622815624.6261647-CDS-M-pyrifera_M_contig111252:240..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111252 241..420 +
1692277493.1109827-CDS-M-pyrifera_M_contig111252:240..4201692277493.1109827-CDS-M-pyrifera_M_contig111252:240..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111252 241..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111252.2351.1prot_M-pyrifera_M_contig111252.2351.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111252 241..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111252.2351.1

>prot_M-pyrifera_M_contig111252.2351.1 ID=prot_M-pyrifera_M_contig111252.2351.1|Name=mRNA_M-pyrifera_M_contig111252.2351.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
PTVSIPELRKQISIFVPLSDWKAIRQEAAQQRIPMTELCRQWMHPSLTRL
REQTTQRAA*
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mRNA from alignment at M-pyrifera_M_contig111252:241..420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111252.2351.1 ID=mRNA_M-pyrifera_M_contig111252.2351.1|Name=mRNA_M-pyrifera_M_contig111252.2351.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig111252:241..420+ (Macrocystis pyrifera P11B4 male)
CCCACTGTGTCCATTCCAGAACTCCGAAAACAAATCTCCATCTTCGTCCC GCTGTCCGACTGGAAGGCGATTCGACAAGAGGCAGCCCAACAACGCATCC CCATGACTGAACTCTGCCGTCAATGGATGCACCCATCCCTCACCCGCTTG CGAGAGCAGACAACGCAACGCGCTGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111252:241..420+

>mRNA_M-pyrifera_M_contig111252.2351.1 ID=mRNA_M-pyrifera_M_contig111252.2351.1|Name=mRNA_M-pyrifera_M_contig111252.2351.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig111252:241..420+ (Macrocystis pyrifera P11B4 male)
CCCACTGTGTCCATTCCAGAACTCCGAAAACAAATCTCCATCTTCGTCCC
GCTGTCCGACTGGAAGGCGATTCGACAAGAGGCAGCCCAACAACGCATCC
CCATGACTGAACTCTGCCGTCAATGGATGCACCCATCCCTCACCCGCTTG
CGAGAGCAGACAACGCAACGCGCTGCCTGACCCACTGTGTCCATTCCAGA
ACTCCGAAAACAAATCTCCATCTTCGTCCCGCTGTCCGACTGGAAGGCGA
TTCGACAAGAGGCAGCCCAACAACGCATCCCCATGACTGAACTCTGCCGT
CAATGGATGCACCCATCCCTCACCCGCTTGCGAGAGCAGACAACGCAACG
CGCTGCCTGA
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