mRNA_M-pyrifera_M_contig110947.2299.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110947.2299.1
Unique NamemRNA_M-pyrifera_M_contig110947.2299.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: A0A067CC58_SAPPC (Fatty acid hydroxylase domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CC58_SAPPC)

HSP 1 Score: 124 bits (311), Expect = 4.780e-33
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTYMEP 321
            H++HH Y +P PFDDMY+HP+E   YY +L+ P ++F  HW SF  Y+ L+GL G+LDHSG  VR+P    ++YD  DH++HH  V+ N+GFP   +D + GTY+ P
Sbjct:  131 HKVHHYYKSPRPFDDMYMHPVEGMAYYWVLYGPPYVFAMHWQSFSVYMALMGLFGLLDHSGIAVRMP----LVYDTRDHELHHRRVNANYGFPFQYLDVLHGTYVAP 233          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: A0A7S1GXN0_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GXN0_HEMAN)

HSP 1 Score: 124 bits (312), Expect = 1.680e-32
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTYME---------PPRK 330
            H++HH Y +P PFDD+YIHPLEA GYY IL+SP +  P H   F  Y+ ++GL GVLDHSG  VR+PG    LY A DHD+HHS  +VN+ FP+ ++D + GT+           PPRK
Sbjct:  186 HKLHHFYKSPEPFDDLYIHPLEAAGYYAILYSPPFALPIHALGFGFYMAIMGLCGVLDHSGVRVRVPG----LYAAEDHDLHHSKFEVNYAFPHPLMDILHGTFSGTCMGFRFPYPPRK 300          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: A0A482SNF4_9ARCH (Fatty acid hydroxylase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNF4_9ARCH)

HSP 1 Score: 123 bits (308), Expect = 2.640e-32
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTY 312
            H++HH Y AP PFDDMYIHP+EA GYYCIL++P +LF  H+ SF+ Y+V++G+ GV+DHSG    +P     +Y+  DHD HH+  +VN+ FP   +D + GT+
Sbjct:  143 HKMHHQYKAPEPFDDMYIHPVEAFGYYCILYAPPFLFTMHYVSFIAYMVIMGIFGVMDHSGIKFSIPA----IYNTVDHDSHHAKFEVNYSFPFPYLDILHGTF 242          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: A0A1V9YQH7_9STRA (Sterol desaturase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQH7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.050e-32
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTYMEP 321
            H++HH Y  P PFDDMY+HP E   YY +L+ P ++ P H  SF+ Y+VL+G  G+LDHSG  VR+P     +YD  DHDVHH+ V  N+GFP  ++D + GTY+ P
Sbjct:  138 HKVHHHYKRPRPFDDMYMHPCEGMAYYWVLYGPPFVLPMHLHSFVVYMVLMGTFGLLDHSGVPVRIP----FVYDTRDHDVHHTRVTYNYGFPFQLLDVVHGTYLPP 240          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: W7TYR2_9STRA (C-4 sterol methyl oxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYR2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.880e-32
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTY 312
            H+ HH Y AP PFDDMYI PLEA GYY IL+SPA + P H  SF  YL LLGL G+LDHSG  VRLP     +YD   HD+HHS  + NFGFP   +D + GTY
Sbjct:  197 HKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPR----VYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: A0A835YXK7_9STRA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.460e-32
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTYMEP 321
            H+ HH Y +P PFDD++IHP+E   YYCILF+PA   P   ++F  Y+ L+G+ G+ DHSG  + L GP    YD+A+HD+HHS V+VNFGFP    DR+ GTY+ P
Sbjct:   61 HKYHHYYKSPSPFDDLFIHPVEGFLYYCILFAPAAALPLRRAAFGAYMTLMGMCGLADHSGVRIAL-GP----YDSAEHDLHHSHVNVNFGFPFAWFDRLHGTYLPP 162          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: A0A5A8E491_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E491_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 1.040e-31
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTY 312
            H +HH   +P PFDDM IHP+EA GYY IL+SPA+LFP H S FL Y+ ++G+ GVLDH G  + LP     LYD   HD HH  VDVNFGFP+  ID + GT+
Sbjct:  166 HHLHHFNKSPEPFDDMLIHPVEAVGYYIILYSPAFLFPMHVSVFLAYMAIMGVTGVLDHCGAVLGLP---LSLYDTRHHDHHHELVDVNFGFPSAAIDVLCGTF 266          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: A0A7S3D0N0_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D0N0_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 2.080e-31
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTY 312
            H+ HH + +P PFDDMYIHPLEA GYY I++S  +L P HW++F GY++++G+AGV+DHSG     P    + Y + DHD+HH   +VN+ FP M +D + GT+
Sbjct:  147 HKYHHYFKSPEPFDDMYIHPLEALGYYIIMYSTPFLIPMHWTAFAGYMIVVGVAGVMDHSGIKFHFP----LFYASEDHDLHHEKYEVNYSFPFMWMDILHGTF 246          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: T0RTT2_SAPDV (Fatty acid hydroxylase domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RTT2_SAPDV)

HSP 1 Score: 119 bits (298), Expect = 5.050e-31
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTYMEP 321
            H++HH Y +P PFDDMY+HP+E   YY +L+ P ++F  H  SF  Y+ L+GL G+LDHSG  VR+P    ++YD  DH++HH  V+ N+GFP    D + GTY+ P
Sbjct:  138 HKVHHHYKSPRPFDDMYMHPVEGMAYYWVLYGPPYVFAMHMHSFCIYMALMGLFGLLDHSGIPVRIP----LVYDTRDHEIHHRRVNYNYGFPFQYFDFLHGTYLAP 240          
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Match: L1JX35_GUITC (Sterol desaturase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JX35_GUITC)

HSP 1 Score: 116 bits (290), Expect = 1.230e-29
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVLLGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRIMGTY 312
            H++HH+Y +P PFDDMYIHP+EA GYYCIL+SP ++FP H   F+ Y+ ++G+ G+LDHSG      G    +Y+  DHD HH   D NF FP + +D + GT+
Sbjct:  147 HKMHHSYKSPQPFDDMYIHPVEAVGYYCILYSPPFVFPLHVYGFVLYMAIMGVCGILDHSGIKWGFLG----IYNTEDHDKHHEHFDCNFAFPFVWMDILHGTF 246          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110947.2299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A067CC58_SAPPC4.780e-3348.60Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S1GXN0_HEMAN1.680e-3250.42Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A482SNF4_9ARCH2.640e-3250.00Fatty acid hydroxylase family protein n=1 Tax=arch... [more]
A0A1V9YQH7_9STRA3.050e-3249.53Sterol desaturase n=1 Tax=Achlya hypogyna TaxID=12... [more]
W7TYR2_9STRA3.880e-3258.65C-4 sterol methyl oxidase n=1 Tax=Nannochloropsis ... [more]
A0A835YXK7_9STRA6.460e-3251.40Fatty acid hydroxylase domain-containing protein n... [more]
A0A5A8E491_CAFRO1.040e-3155.77Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A7S3D0N0_9EUKA2.080e-3149.04Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
T0RTT2_SAPDV5.050e-3147.66Fatty acid hydroxylase domain-containing protein n... [more]
L1JX35_GUITC1.230e-2949.04Sterol desaturase n=2 Tax=Guillardia theta TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110947contigM-pyrifera_M_contig110947:23..594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue6.5e-25
Seed eggNOG ortholog112098.XP_008612975.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.C-4 methylsterol oxidase activity
EggNOG OGsCOG3000@1,KOG0873@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.5676-CDS-M-pyrifera_M_contig110947:22..2961622815621.5676-CDS-M-pyrifera_M_contig110947:22..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110947 23..296 -
1692277491.5257528-CDS-M-pyrifera_M_contig110947:22..2961692277491.5257528-CDS-M-pyrifera_M_contig110947:22..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110947 23..296 -
1622815621.5802336-CDS-M-pyrifera_M_contig110947:520..5941622815621.5802336-CDS-M-pyrifera_M_contig110947:520..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110947 521..594 -
1692277491.5475845-CDS-M-pyrifera_M_contig110947:520..5941692277491.5475845-CDS-M-pyrifera_M_contig110947:520..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110947 521..594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110947.2299.1prot_M-pyrifera_M_contig110947.2299.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110947 23..594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110947.2299.1

>prot_M-pyrifera_M_contig110947.2299.1 ID=prot_M-pyrifera_M_contig110947.2299.1|Name=mRNA_M-pyrifera_M_contig110947.2299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
HRIHHAYHAPIPFDDMYIHPLEATGYYCILFSPAWLFPQHWSSFLGYLVL
LGLAGVLDHSGTHVRLPGPLAVLYDAADHDVHHSDVDVNFGFPNMIIDRI
MGTYMEPPRKEEKRE*
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mRNA from alignment at M-pyrifera_M_contig110947:23..594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110947.2299.1 ID=mRNA_M-pyrifera_M_contig110947.2299.1|Name=mRNA_M-pyrifera_M_contig110947.2299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=572bp|location=Sequence derived from alignment at M-pyrifera_M_contig110947:23..594- (Macrocystis pyrifera P11B4 male)
CACCGCATCCACCACGCCTACCACGCCCCCATCCCATTCGACGACATGTA CATCCACCCCCTAGAAGCCACAGGGTAAGAGGGAAAGAGGGGACGTGGAG GTGGAGGTGGGTTGTTGGTGTTGTGGTGTGAGTTTTCTTCCTTTTTGAGC ATTGTTTTGGATGCTTTGGGTGGTTGAAGTGGGGTTTTGGGAGTGTGTGG GGTGTTGTGAAGTCATGAGACCATCATTTCTCACATCAAACGTTTCTTTG TGCATCATATTTTCCTCCCAATCCCAACCCCACTTCCTTCTCTCCCAGGT ACTACTGCATCCTCTTCTCCCCTGCGTGGTTGTTTCCACAGCACTGGAGT TCTTTCTTGGGGTACTTGGTGCTCCTGGGGTTGGCTGGGGTGTTGGATCA TAGCGGCACACATGTGCGTCTTCCAGGGCCACTGGCAGTGCTCTATGACG CCGCTGACCATGACGTGCACCACAGCGACGTGGATGTCAACTTTGGCTTC CCAAACATGATCATCGACAGAATCATGGGAACTTACATGGAACCTCCCAG GAAAGAAGAGAAAAGGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110947:23..594-

>mRNA_M-pyrifera_M_contig110947.2299.1 ID=mRNA_M-pyrifera_M_contig110947.2299.1|Name=mRNA_M-pyrifera_M_contig110947.2299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig110947:23..594- (Macrocystis pyrifera P11B4 male)
CACCGCATCCACCACGCCTACCACGCCCCCATCCCATTCGACGACATGTA
CATCCACCCCCTAGAAGCCACAGGCACCGCATCCACCACGCCTACCACGC
CCCCATCCCATTCGACGACATGTACATCCACCCCCTAGAAGCCACAGGGT
ACTACTGCATCCTCTTCTCCCCTGCGTGGTTGTTTCCACAGCACTGGAGT
TCTTTCTTGGGGTACTTGGTGCTCCTGGGGTTGGCTGGGGTGTTGGATCA
TAGCGGCACACATGTGCGTCTTCCAGGGCCACTGGCAGTGCTCTATGACG
CCGCTGACCATGACGTGCACCACAGCGACGTGGATGTCAACTTTGGCTTC
CCAAACATGATCATCGACAGAATCATGGGAACTTACATGGAACCTCCCAG
GAAAGAAGAGAAAAGGGAGTGAGTACTACTGCATCCTCTTCTCCCCTGCG
TGGTTGTTTCCACAGCACTGGAGTTCTTTCTTGGGGTACTTGGTGCTCCT
GGGGTTGGCTGGGGTGTTGGATCATAGCGGCACACATGTGCGTCTTCCAG
GGCCACTGGCAGTGCTCTATGACGCCGCTGACCATGACGTGCACCACAGC
GACGTGGATGTCAACTTTGGCTTCCCAAACATGATCATCGACAGAATCAT
GGGAACTTACATGGAACCTCCCAGGAAAGAAGAGAAAAGGGAGTGA
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