mRNA_M-pyrifera_M_contig110933.2294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110933.2294.1
Unique NamemRNA_M-pyrifera_M_contig110933.2294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.910e-22
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  100 AVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
            A  AT VV L +M+T +DL++ EEYK ++ED TEEC ++G+LK VVIP+ G PG+ ++FL Y     A  A A L GR FDGR + A +FDE +F A  +
Sbjct:  149 ATDATRVVELRHMLTQQDLENDEEYKDILEDTTEECGQFGSLKKVVIPRTG-PGATKIFLEYATKDDAAKAIASLAGRTFDGRKVTAVYFDEGRFAAEDY 247          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.790e-21
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   91 APPAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
            AP A+ AT VV L  M+T +DL++ +EYK ++ED TEEC ++G+LK VVIP+ G PG+ ++FL Y     A  A A L GR FDGR + A ++DEA+F A  +
Sbjct:  328 APHAIDATCVVELCQMLTQQDLENDDEYKEILEDTTEECGQFGSLKRVVIPRSG-PGATKIFLEYATKEDAARAIASLAGRTFDGRKVTAVYYDEARFAAQDY 429          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1Z5KDF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDF2_FISSO)

HSP 1 Score: 95.1 bits (235), Expect = 1.120e-20
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  118 VVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
            VV L NM++ +DL+DPEEY+ +++D  EEC+K+G L  V+IP+ G  G+ ++FL Y     A  A   L GR FDGR + A+FFDEAKF A  F
Sbjct:  253 VVQLKNMLSPQDLEDPEEYEDIMQDTREECSKFGNLLQVMIPRKGEVGATQIFLEYGSADEANAAILGLRGRTFDGRLVEATFFDEAKFAARDF 346          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A183IXS8_9BILA (RRM domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IXS8_9BILA)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-20
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  109 ATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
            AT V+ L NMVTAE+LKD +EY+ ++ED+ EEC KYG +K+V IP+P      PG G+VF+ ++++     A   L GR F  R +V S+FD   +   QF
Sbjct:   27 ATEVLCLMNMVTAEELKDNDEYEDILEDIREECTKYGAVKSVEIPRPIEGLDVPGVGKVFVEFSNVAECQRAQQGLTGRKFANRVVVTSYFDPDLYHRRQF 127          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A2G9GD33_9LAMI (Splicing factor U2af large subunit n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GD33_9LAMI)

HSP 1 Score: 95.5 bits (236), Expect = 1.290e-20
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP-----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
            P V AT VV L  +VTA++LKD ++Y+ +VED+  EC K+GTL  VVIP+P       PG G+VFL Y D+ +A  A   LNGR F G  +VA F+ E KF    +
Sbjct:  286 PTVVATKVVCLTEVVTADELKDDDDYEDIVEDMRTECGKFGTLVNVVIPRPLPSGEMGPGVGKVFLEYADIESATKARQGLNGRKFGGNQVVAVFYPENKFSQGDY 391          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A2K1JH19_PHYPA (Splicing factor U2af large subunit n=12 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JH19_PHYPA)

HSP 1 Score: 95.5 bits (236), Expect = 2.660e-20
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
            P   +T VVAL  +V+ ++LKD EEY+ ++ED+ EEC KYG L  VVIP+P      PG G+VF+ Y+D   A  A A L+GR F G ++VA ++ E KF A  +
Sbjct:  456 PLETSTKVVALTQVVSPDELKDDEEYQDILEDMKEECGKYGNLLRVVIPRPRDGEDVPGVGKVFVEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPEEKFAAGDY 560          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1S3U6D8_VIGRR (Splicing factor U2af large subunit n=2 Tax=Vigna TaxID=3913 RepID=A0A1S3U6D8_VIGRR)

HSP 1 Score: 94.7 bits (234), Expect = 2.770e-20
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP---GFP--GSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
            PA+ AT VV L + V+A++LKD E+Y+ +++D+ +EC+K+G+L  VVIP+P   G P  G G+VFL Y D+  A  A A LNGR FDG  +VA F+ E KF
Sbjct:  300 PALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKF 400          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A834TME4_9FABA (Splicing factor U2af large subunit n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TME4_9FABA)

HSP 1 Score: 94.7 bits (234), Expect = 2.790e-20
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   88 IAPPAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPG-----FPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
            + P  V AT VV L   ++A++LKD E+Y+ +VED+ +EC+K+GTL  VVIP+P       PG G+VFL Y D+  A  A   LNGR F G  +VA F+ E KF
Sbjct:  298 LQPALVTATKVVCLSQAISADELKDDEDYEEIVEDMRQECSKFGTLVNVVIPRPQPDGEPAPGVGKVFLEYADVEGATKARTGLNGRKFGGNQVVAVFYPENKF 401          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1S3U6H9_VIGRR (Splicing factor U2af large subunit n=10 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A1S3U6H9_VIGRR)

HSP 1 Score: 94.7 bits (234), Expect = 2.810e-20
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP---GFP--GSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
            PA+ AT VV L + V+A++LKD E+Y+ +++D+ +EC+K+G+L  VVIP+P   G P  G G+VFL Y D+  A  A A LNGR FDG  +VA F+ E KF
Sbjct:  302 PALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKF 402          
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: UPI000DECAAA3 (splicing factor U2af large subunit B-like isoform X5 n=3 Tax=50 kb inversion clade TaxID=2231393 RepID=UPI000DECAAA3)

HSP 1 Score: 94.7 bits (234), Expect = 3.280e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP-----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
            PA+ AT VV L + V++++LKD E+Y+ +++D+ +EC+K+GTL  VVIP+P       PG G+VFL Y D+  A  A A LNGR F G  +VA F+ E KF
Sbjct:  325 PALVATKVVCLTHAVSSDELKDDEDYEEILDDMRQECSKFGTLVNVVIPRPQPNGEATPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVVAVFYPENKF 425          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9WB13_9STRA8.910e-2249.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4I336_9STRA1.790e-2148.54Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KDF2_FISSO1.120e-2048.94Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A183IXS8_9BILA1.260e-2044.55RRM domain-containing protein n=1 Tax=Soboliphyme ... [more]
A0A2G9GD33_9LAMI1.290e-2047.17Splicing factor U2af large subunit n=1 Tax=Handroa... [more]
A0A2K1JH19_PHYPA2.660e-2045.71Splicing factor U2af large subunit n=12 Tax=Physco... [more]
A0A1S3U6D8_VIGRR2.770e-2049.50Splicing factor U2af large subunit n=2 Tax=Vigna T... [more]
A0A834TME4_9FABA2.790e-2047.12Splicing factor U2af large subunit n=1 Tax=Senna t... [more]
A0A1S3U6H9_VIGRR2.810e-2049.50Splicing factor U2af large subunit n=10 Tax=50 kb ... [more]
UPI000DECAAA33.280e-2047.52splicing factor U2af large subunit B-like isoform ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110933contigM-pyrifera_M_contig110933:26..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue4.3e-20
Seed eggNOG ortholog227086.JGI_V11_88034
KEGG koko:K12837
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons1
Model size402
Cds size402
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.3464267-CDS-M-pyrifera_M_contig110933:25..4271622815621.3464267-CDS-M-pyrifera_M_contig110933:25..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110933 26..427 +
1692277491.4482343-CDS-M-pyrifera_M_contig110933:25..4271692277491.4482343-CDS-M-pyrifera_M_contig110933:25..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110933 26..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110933.2294.1prot_M-pyrifera_M_contig110933.2294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110933 26..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110933.2294.1

>prot_M-pyrifera_M_contig110933.2294.1 ID=prot_M-pyrifera_M_contig110933.2294.1|Name=mRNA_M-pyrifera_M_contig110933.2294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MGLTGGGGGVGGMGGMGGMGGMAGVGGVGIAPPAVAATSVVALDNMVTAE
DLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPA
AVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF*
back to top

mRNA from alignment at M-pyrifera_M_contig110933:26..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110933.2294.1 ID=mRNA_M-pyrifera_M_contig110933.2294.1|Name=mRNA_M-pyrifera_M_contig110933.2294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig110933:26..427+ (Macrocystis pyrifera P11B4 male)
ATGGGTCTCACTGGTGGAGGTGGTGGAGTGGGTGGGATGGGTGGGATGGG TGGGATGGGTGGGATGGCAGGGGTTGGTGGGGTTGGTATTGCTCCTCCTG CGGTAGCTGCCACTTCTGTGGTTGCGTTGGACAATATGGTCACTGCAGAG GATCTGAAAGACCCCGAGGAGTACAAGGGCCTGGTGGAGGATGTGACGGA GGAATGCGCAAAGTATGGAACGCTCAAAGCAGTCGTCATCCCCAAACCAG GGTTCCCAGGGAGCGGGAGAGTCTTCCTCCACTACAACGACCTCCCAGCA GCCGTCACCGCCCACGCAAAACTCAACGGAAGGGCGTTCGACGGAAGAAC CATCGTCGCATCATTCTTCGACGAAGCGAAATTCCAAGCAAACCAATTCT GA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110933:26..427+

>mRNA_M-pyrifera_M_contig110933.2294.1 ID=mRNA_M-pyrifera_M_contig110933.2294.1|Name=mRNA_M-pyrifera_M_contig110933.2294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig110933:26..427+ (Macrocystis pyrifera P11B4 male)
ATGGGTCTCACTGGTGGAGGTGGTGGAGTGGGTGGGATGGGTGGGATGGG
TGGGATGGGTGGGATGGCAGGGGTTGGTGGGGTTGGTATTGCTCCTCCTG
CGGTAGCTGCCACTTCTGTGGTTGCGTTGGACAATATGGTCACTGCAGAG
GATCTGAAAGACCCCGAGGAGTACAAGGGCCTGGTGGAGGATGTGACGGA
GGAATGCGCAAAGTATGGAACGCTCAAAGCAGTCGTCATCCCCAAACCAG
GGTTCCCAGGGAGCGGGAGAGTCTTCCTCCACTACAACGACCTCCCAGCA
GCCGTCACCGCCCACGCAAAACTCAACGGAAGGGCGTTCGACGGAAGAAC
CATCGTCGCATCATTCTTCGACGAAGCGAAATTCCAAGCAAACCAATTCT
GAATGGGTCTCACTGGTGGAGGTGGTGGAGTGGGTGGGATGGGTGGGATG
GGTGGGATGGGTGGGATGGCAGGGGTTGGTGGGGTTGGTATTGCTCCTCC
TGCGGTAGCTGCCACTTCTGTGGTTGCGTTGGACAATATGGTCACTGCAG
AGGATCTGAAAGACCCCGAGGAGTACAAGGGCCTGGTGGAGGATGTGACG
GAGGAATGCGCAAAGTATGGAACGCTCAAAGCAGTCGTCATCCCCAAACC
AGGGTTCCCAGGGAGCGGGAGAGTCTTCCTCCACTACAACGACCTCCCAG
CAGCCGTCACCGCCCACGCAAAACTCAACGGAAGGGCGTTCGACGGAAGA
ACCATCGTCGCATCATTCTTCGACGAAGCGAAATTCCAAGCAAACCAATT
CTGA
back to top