mRNA_M-pyrifera_M_contig110933.2294.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 8.910e-22 Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 100 AVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
A AT VV L +M+T +DL++ EEYK ++ED TEEC ++G+LK VVIP+ G PG+ ++FL Y A A A L GR FDGR + A +FDE +F A +
Sbjct: 149 ATDATRVVELRHMLTQQDLENDEEYKDILEDTTEECGQFGSLKKVVIPRTG-PGATKIFLEYATKDDAAKAIASLAGRTFDGRKVTAVYFDEGRFAAEDY 247
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.790e-21 Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 91 APPAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
AP A+ AT VV L M+T +DL++ +EYK ++ED TEEC ++G+LK VVIP+ G PG+ ++FL Y A A A L GR FDGR + A ++DEA+F A +
Sbjct: 328 APHAIDATCVVELCQMLTQQDLENDDEYKEILEDTTEECGQFGSLKRVVIPRSG-PGATKIFLEYATKEDAARAIASLAGRTFDGRKVTAVYYDEARFAAQDY 429
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1Z5KDF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDF2_FISSO) HSP 1 Score: 95.1 bits (235), Expect = 1.120e-20 Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 118 VVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPGFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
VV L NM++ +DL+DPEEY+ +++D EEC+K+G L V+IP+ G G+ ++FL Y A A L GR FDGR + A+FFDEAKF A F
Sbjct: 253 VVQLKNMLSPQDLEDPEEYEDIMQDTREECSKFGNLLQVMIPRKGEVGATQIFLEYGSADEANAAILGLRGRTFDGRLVEATFFDEAKFAARDF 346
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A183IXS8_9BILA (RRM domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IXS8_9BILA) HSP 1 Score: 90.1 bits (222), Expect = 1.260e-20 Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 109 ATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
AT V+ L NMVTAE+LKD +EY+ ++ED+ EEC KYG +K+V IP+P PG G+VF+ ++++ A L GR F R +V S+FD + QF
Sbjct: 27 ATEVLCLMNMVTAEELKDNDEYEDILEDIREECTKYGAVKSVEIPRPIEGLDVPGVGKVFVEFSNVAECQRAQQGLTGRKFANRVVVTSYFDPDLYHRRQF 127
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A2G9GD33_9LAMI (Splicing factor U2af large subunit n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GD33_9LAMI) HSP 1 Score: 95.5 bits (236), Expect = 1.290e-20 Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP-----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
P V AT VV L +VTA++LKD ++Y+ +VED+ EC K+GTL VVIP+P PG G+VFL Y D+ +A A LNGR F G +VA F+ E KF +
Sbjct: 286 PTVVATKVVCLTEVVTADELKDDDDYEDIVEDMRTECGKFGTLVNVVIPRPLPSGEMGPGVGKVFLEYADIESATKARQGLNGRKFGGNQVVAVFYPENKFSQGDY 391
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A2K1JH19_PHYPA (Splicing factor U2af large subunit n=12 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JH19_PHYPA) HSP 1 Score: 95.5 bits (236), Expect = 2.660e-20 Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKFQANQF 399
P +T VVAL +V+ ++LKD EEY+ ++ED+ EEC KYG L VVIP+P PG G+VF+ Y+D A A A L+GR F G ++VA ++ E KF A +
Sbjct: 456 PLETSTKVVALTQVVSPDELKDDEEYQDILEDMKEECGKYGNLLRVVIPRPRDGEDVPGVGKVFVEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPEEKFAAGDY 560
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1S3U6D8_VIGRR (Splicing factor U2af large subunit n=2 Tax=Vigna TaxID=3913 RepID=A0A1S3U6D8_VIGRR) HSP 1 Score: 94.7 bits (234), Expect = 2.770e-20 Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP---GFP--GSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
PA+ AT VV L + V+A++LKD E+Y+ +++D+ +EC+K+G+L VVIP+P G P G G+VFL Y D+ A A A LNGR FDG +VA F+ E KF
Sbjct: 300 PALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKF 400
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A834TME4_9FABA (Splicing factor U2af large subunit n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TME4_9FABA) HSP 1 Score: 94.7 bits (234), Expect = 2.790e-20 Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 88 IAPPAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKPG-----FPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
+ P V AT VV L ++A++LKD E+Y+ +VED+ +EC+K+GTL VVIP+P PG G+VFL Y D+ A A LNGR F G +VA F+ E KF
Sbjct: 298 LQPALVTATKVVCLSQAISADELKDDEDYEEIVEDMRQECSKFGTLVNVVIPRPQPDGEPAPGVGKVFLEYADVEGATKARTGLNGRKFGGNQVVAVFYPENKF 401
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: A0A1S3U6H9_VIGRR (Splicing factor U2af large subunit n=10 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A1S3U6H9_VIGRR) HSP 1 Score: 94.7 bits (234), Expect = 2.810e-20 Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP---GFP--GSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
PA+ AT VV L + V+A++LKD E+Y+ +++D+ +EC+K+G+L VVIP+P G P G G+VFL Y D+ A A A LNGR FDG +VA F+ E KF
Sbjct: 302 PALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKF 402
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Match: UPI000DECAAA3 (splicing factor U2af large subunit B-like isoform X5 n=3 Tax=50 kb inversion clade TaxID=2231393 RepID=UPI000DECAAA3) HSP 1 Score: 94.7 bits (234), Expect = 3.280e-20 Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 97 PAVAATSVVALDNMVTAEDLKDPEEYKGLVEDVTEECAKYGTLKAVVIPKP-----GFPGSGRVFLHYNDLPAAVTAHAKLNGRAFDGRTIVASFFDEAKF 384
PA+ AT VV L + V++++LKD E+Y+ +++D+ +EC+K+GTL VVIP+P PG G+VFL Y D+ A A A LNGR F G +VA F+ E KF
Sbjct: 325 PALVATKVVCLTHAVSSDELKDDEDYEEILDDMRQECSKFGTLVNVVIPRPQPNGEATPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVVAVFYPENKF 425 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110933.2294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig110933.2294.1 >prot_M-pyrifera_M_contig110933.2294.1 ID=prot_M-pyrifera_M_contig110933.2294.1|Name=mRNA_M-pyrifera_M_contig110933.2294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp MGLTGGGGGVGGMGGMGGMGGMAGVGGVGIAPPAVAATSVVALDNMVTAEback to top mRNA from alignment at M-pyrifera_M_contig110933:26..427+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig110933.2294.1 ID=mRNA_M-pyrifera_M_contig110933.2294.1|Name=mRNA_M-pyrifera_M_contig110933.2294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig110933:26..427+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig110933:26..427+ >mRNA_M-pyrifera_M_contig110933.2294.1 ID=mRNA_M-pyrifera_M_contig110933.2294.1|Name=mRNA_M-pyrifera_M_contig110933.2294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig110933:26..427+ (Macrocystis pyrifera P11B4 male)back to top |