mRNA_M-pyrifera_M_contig110813.2276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110813.2276.1
Unique NamemRNA_M-pyrifera_M_contig110813.2276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110813.2276.1 vs. uniprot
Match: A0A5C6BV68_9PLAN (Tetratricopeptide repeat protein n=5 Tax=Symmachiella TaxID=2795780 RepID=A0A5C6BV68_9PLAN)

HSP 1 Score: 248 bits (633), Expect = 2.620e-76
Identity = 119/194 (61.34%), Postives = 156/194 (80.41%), Query Frame = 1 
Query:    1 HALKWIPVIVILGLLFVSDFLDPPLTTAHTNELKRTYTRTLVGKPVLPPNEEETNWLYKQYQAAQHIAAAVPDDRRAQLHYAVMLANFGRNDEATDRLEEILQQSPDYRDAHITLGDIHTYRGNLDQASARYQSALSGARTGPERAAMNLRLGEIDLQRKDFTAAKNKFQKALQDDPALAESVETLETGRAASP 582
            HALKW P IV+LGLLF+SD +DPPLTTA  +++ ++Y +T+VGKP+     EE +WL +++Q+AQ IAA VPDDRRAQL  +++LANFGRN+EA +RLEE+L+Q PDY DAH  L +IH Y+GNL+QAS R+Q+ALS A+TG ER+A+NLRLGEIDL +KDF AAK +FQKA++DDP L+ SVE LE   + SP
Sbjct:  375 HALKWAPAIVVLGLLFLSDLIDPPLTTAQKDKMDKSYAQTVVGKPIRLEKPEEISWLNEKFQSAQDIAATVPDDRRAQLRASILLANFGRNNEAANRLEELLKQHPDYFDAHTILAEIHLYQGNLEQASDRFQTALSLAKTGKERSAINLRLGEIDLHKKDFAAAKIRFQKAVEDDPRLSASVEALEKASSPSP 568
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BLAST of mRNA_M-pyrifera_M_contig110813.2276.1 vs. uniprot
Match: UPI00029AAAF9 (hypothetical protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029AAAF9)

HSP 1 Score: 189 bits (481), Expect = 5.970e-54
Identity = 92/186 (49.46%), Postives = 125/186 (67.20%), Query Frame = 1 
Query:    1 HALKWIPVIVILGLLFVSDFLDPPLTTAHTNELKRTYTRTLVGKPVLPPNEEETNWLYKQYQAAQHIAAAVPDDRRAQLHYAVMLANFGRNDEATDRLEEILQQSPDYRDAHITLGDIHTYRGNLDQASARYQSALSGARTGPERAAMNLRLGEIDLQRKDFTAAKNKFQKALQDDPALAESVETL 558
            H LKW P +V L LLF +D  D PLTT   + L + Y+R L G  +LP  ++E  WLY  ++  Q IAAA+PDDR+ QL  A+MLANFG ND+A  +LE++LQQ  D+ DA++TLG IH YRGN+DQA+   Q +LS ART  ERA+ N +LGE+ L + D   A ++F +AL D+P L  S++ L
Sbjct:  377 HLLKWAPALVGLALLFATDVSDSPLTTEQKDTLSQVYSRGLTGSSLLPRTDKEREWLYSHFKTTQSIAAAIPDDRKIQLRAAIMLANFGSNDDAVRKLEQLLQQHADFADAYLTLGSIHLYRGNMDQAAQYLQKSLSAARTEKERASANFKLGELALVQHDSAVADSRFAEALHDNPKLDVSIQKL 562
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BLAST of mRNA_M-pyrifera_M_contig110813.2276.1 vs. uniprot
Match: A0A3L7PAF9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PAF9_9BACT)

HSP 1 Score: 167 bits (424), Expect = 1.260e-45
Identity = 84/187 (44.92%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:    1 HALKWIPVIVILGLLFVSDFLDPPLTTAHTNELKRTYTRTLVGKPVLPPNEEETNWLYKQYQAAQHIAAAVPDDRRAQLHYAVMLANFGRNDEATDRLEEILQQSPDYRDAHITLGDIHTYRGNLDQASARYQSALSGARTGPERAAMNLRLGEIDLQRKDFTAAKNKFQKALQDDPALAESVETLE 561
            H LKW P+I+++G LF+SD+    L  +   +L + Y  +L+GK  LPP EEE +W+Y Q++ AQ  AAAVP+D  AQ+  A+MLANFGRNDEA   LE++ Q+ P Y ++H++L +I  YRG LDQA+  +++AL       ERA +NL+LGE+ L++     A + FQ A+  +P L  +VE LE
Sbjct:  372 HLLKWSPLILLVGWLFLSDYSGTSLAQSRKKQLSQVYVESLMGKAALPPEEEEASWVYSQFEQAQATAAAVPNDPDAQVRAAIMLANFGRNDEAVAILEKVNQEYPSYFNSHVSLAEICLYRGQLDQAAPLFETALKLVVEPDERAIVNLKLGEVYLRQNHPEQAHSHFQAAIAGNPKLKAAVEKLE 558
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110813.2276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5C6BV68_9PLAN2.620e-7661.34Tetratricopeptide repeat protein n=5 Tax=Symmachie... [more]
UPI00029AAAF95.970e-5449.46hypothetical protein n=1 Tax=Schlesneria paludicol... [more]
A0A3L7PAF9_9BACT1.260e-4544.92Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110813contigM-pyrifera_M_contig110813:5..595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score189.9
Seed ortholog evalue1.1e-45
Seed eggNOG ortholog1123242.JH636434_gene5238
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E55N@1,32ZYI@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size591
Cds size591
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.2323773-CDS-M-pyrifera_M_contig110813:4..5951622815620.2323773-CDS-M-pyrifera_M_contig110813:4..595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110813 5..595 -
1692277490.8422644-CDS-M-pyrifera_M_contig110813:4..5951692277490.8422644-CDS-M-pyrifera_M_contig110813:4..595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110813 5..595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110813.2276.1prot_M-pyrifera_M_contig110813.2276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110813 5..595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110813.2276.1

>prot_M-pyrifera_M_contig110813.2276.1 ID=prot_M-pyrifera_M_contig110813.2276.1|Name=mRNA_M-pyrifera_M_contig110813.2276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
HALKWIPVIVILGLLFVSDFLDPPLTTAHTNELKRTYTRTLVGKPVLPPN
EEETNWLYKQYQAAQHIAAAVPDDRRAQLHYAVMLANFGRNDEATDRLEE
ILQQSPDYRDAHITLGDIHTYRGNLDQASARYQSALSGARTGPERAAMNL
RLGEIDLQRKDFTAAKNKFQKALQDDPALAESVETLETGRAASPGY*
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mRNA from alignment at M-pyrifera_M_contig110813:5..595-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110813.2276.1 ID=mRNA_M-pyrifera_M_contig110813.2276.1|Name=mRNA_M-pyrifera_M_contig110813.2276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig110813:5..595- (Macrocystis pyrifera P11B4 male)
CACGCTCTGAAATGGATTCCGGTAATTGTCATACTCGGCTTGCTATTCGT
GTCCGACTTCCTCGATCCGCCTCTGACGACGGCTCACACGAATGAGCTGA
AACGGACCTACACCCGGACGCTTGTCGGCAAACCGGTACTCCCTCCGAAT
GAAGAAGAGACTAACTGGCTATACAAGCAGTATCAGGCAGCTCAGCATAT
CGCAGCGGCTGTCCCTGATGATCGCAGAGCACAACTGCATTATGCAGTCA
TGCTTGCGAATTTCGGACGCAATGACGAAGCCACGGATCGCCTTGAAGAG
ATTTTACAACAGAGTCCAGATTATCGTGATGCGCACATCACCTTGGGTGA
CATTCATACTTATCGGGGGAACCTTGATCAGGCGTCGGCCAGGTATCAAT
CCGCCCTGTCTGGGGCTCGGACTGGACCAGAGCGAGCCGCCATGAATCTC
AGATTGGGTGAGATTGATCTCCAAAGGAAGGACTTCACTGCGGCAAAAAA
CAAATTCCAGAAAGCTCTGCAGGACGATCCCGCACTTGCAGAGTCAGTTG
AGACCCTGGAGACAGGAAGGGCTGCTTCCCCCGGTTATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110813:5..595-

>mRNA_M-pyrifera_M_contig110813.2276.1 ID=mRNA_M-pyrifera_M_contig110813.2276.1|Name=mRNA_M-pyrifera_M_contig110813.2276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig110813:5..595- (Macrocystis pyrifera P11B4 male)
CACGCTCTGAAATGGATTCCGGTAATTGTCATACTCGGCTTGCTATTCGT
GTCCGACTTCCTCGATCCGCCTCTGACGACGGCTCACACGAATGAGCTGA
AACGGACCTACACCCGGACGCTTGTCGGCAAACCGGTACTCCCTCCGAAT
GAAGAAGAGACTAACTGGCTATACAAGCAGTATCAGGCAGCTCAGCATAT
CGCAGCGGCTGTCCCTGATGATCGCAGAGCACAACTGCATTATGCAGTCA
TGCTTGCGAATTTCGGACGCAATGACGAAGCCACGGATCGCCTTGAAGAG
ATTTTACAACAGAGTCCAGATTATCGTGATGCGCACATCACCTTGGGTGA
CATTCATACTTATCGGGGGAACCTTGATCAGGCGTCGGCCAGGTATCAAT
CCGCCCTGTCTGGGGCTCGGACTGGACCAGAGCGAGCCGCCATGAATCTC
AGATTGGGTGAGATTGATCTCCAAAGGAAGGACTTCACTGCGGCAAAAAA
CAAATTCCAGAAAGCTCTGCAGGACGATCCCGCACTTGCAGAGTCAGTTG
AGACCCTGGAGACAGGAAGGGCTGCTTCCCCCGGTTATTGACACGCTCTG
AAATGGATTCCGGTAATTGTCATACTCGGCTTGCTATTCGTGTCCGACTT
CCTCGATCCGCCTCTGACGACGGCTCACACGAATGAGCTGAAACGGACCT
ACACCCGGACGCTTGTCGGCAAACCGGTACTCCCTCCGAATGAAGAAGAG
ACTAACTGGCTATACAAGCAGTATCAGGCAGCTCAGCATATCGCAGCGGC
TGTCCCTGATGATCGCAGAGCACAACTGCATTATGCAGTCATGCTTGCGA
ATTTCGGACGCAATGACGAAGCCACGGATCGCCTTGAAGAGATTTTACAA
CAGAGTCCAGATTATCGTGATGCGCACATCACCTTGGGTGACATTCATAC
TTATCGGGGGAACCTTGATCAGGCGTCGGCCAGGTATCAATCCGCCCTGT
CTGGGGCTCGGACTGGACCAGAGCGAGCCGCCATGAATCTCAGATTGGGT
GAGATTGATCTCCAAAGGAAGGACTTCACTGCGGCAAAAAACAAATTCCA
GAAAGCTCTGCAGGACGATCCCGCACTTGCAGAGTCAGTTGAGACCCTGG
AGACAGGAAGGGCTGCTTCCCCCGGTTATTGA
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