mRNA_M-pyrifera_M_contig110685.2249.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A3D3BPL3_9ACTN (Transport permease protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3D3BPL3_9ACTN) HSP 1 Score: 195 bits (495), Expect = 2.860e-59 Identity = 93/171 (54.39%), Postives = 122/171 (71.35%), Query Frame = 1
Query: 4 KTIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
+ + NL LIRS+YFPRA +P++S L +Y F P++ VM + V +G PTWRW +LPL+L+M+ MT G VF+ AR G VPDL+SLLPHL+RLLFY SGVLF PA+F+ N TVL++F LNPFFEM ++RW GR++DG +WG W + +V G YFWR EI YG
Sbjct: 110 RCLQANLTLIRSMYFPRAAIPISSTLSGVYTFAPSILVMALVVVGSGHWPTWRWLLLPLVLMMMVTMTQGAVFVVARVGKAVPDLHSLLPHLIRLLFYCSGVLFAPASFSDNATVLWLFKLNPFFEMLEMLRWVFMGRSIDGELWGFGAGWAIVSVVGGAWYFWRGEITYG 280
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A800IEA7_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800IEA7_9ACTN) HSP 1 Score: 138 bits (347), Expect = 4.470e-37 Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 1
Query: 7 TIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
+I N LIRSI FPR+++P+++ F P+L V++G +ITGE PTWRW LP++LL AL +G F+ AR G+ V D+ +LPHL RLLFY SGV+F F N T+ +F LNP +++ + RWS+ G I W +AG +YF E +YG
Sbjct: 107 SIKRNESLIRSIQFPRSLLPVSAVTGQTIAFAPSLVVLLGFVLITGELPTWRWFALPVILLGQALFGVGAAFIIARVGFAVTDIQQILPHLFRLLFYMSGVIFSVEVFITNTTMQNLFALNPMYDIITIARWSLMGLPAPTACVVGLIVWATLLPIAGLLYFRAGEHRYG 276
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A2E7KXS3_9BACT (Transport permease protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A2E7KXS3_9BACT) HSP 1 Score: 130 bits (328), Expect = 3.050e-34 Identity = 66/172 (38.37%), Postives = 102/172 (59.30%), Query Frame = 1
Query: 1 TKTIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
T +I N LIRSI FPRA++P+ + + F PA+ V + G +P++RW ++ ++ + L +G F+ AR GY PDL LLPH RLL YGSG++F +F N+ VL ++ +NP +++C L RW++ G + G A I W++ V G +YF R E++YG
Sbjct: 105 TVSIRRNQSLIRSIQFPRALLPIGAIVGQTIAFFPAMVVTFVFLISLGVSPSFRWFLILPIIFLQQLFGLGAGFVFARLGYSFPDLQQLLPHFFRLLLYGSGIIFSLESFVTNKLVLDLYVINPLYDICTLARWALIGYPISGLCVLALIGWSIILPVFGLLYFRRQELRYG 276
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A800ID69_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800ID69_9ACTN) HSP 1 Score: 129 bits (323), Expect = 1.700e-33 Identity = 67/170 (39.41%), Postives = 101/170 (59.41%), Query Frame = 1
Query: 7 TIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
+I N LIRSI FPR+++P+++ F+P+L V++ +ITGE PT RW +LP++LL AL +G F+ AR G+ V D+ +LPHL RLLFY SGV+F F N T+ +F LNP +++ RW++ G + + W L +AG ++F E +YG
Sbjct: 107 SIRRNESLIRSIQFPRSLLPVSAVTGQTIAFIPSLVVLLSFVLITGERPTLRWLLLPIILLGQALFGVGASFIIARIGFAVTDIQQILPHLFRLLFYMSGVIFSVEVFITNTTMQNLFALNPMYDIITAARWALMGLPLPVACVVGLVLWALLLPIAGLLFFRAREHRYG 276
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A2E8NB55_9ACTN (Transport permease protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8NB55_9ACTN) HSP 1 Score: 129 bits (323), Expect = 1.950e-33 Identity = 69/172 (40.12%), Postives = 97/172 (56.40%), Query Frame = 1
Query: 4 KTIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYGG 519
+++ N L+R++ FPRA +P+ SA+ L F P L VM+ + + G AP RW LP LL L + +G +SARA + DL +LLP L RLLFY SGVL+ F +E + +F +NP + + RW++ G V G W +AW FL+ GFV F E YGG
Sbjct: 110 RSVVANAGLVRALRFPRAALPVGSAIGQLLSFAPVLVVMLVVTLAHGHAPDLRWLALPGLLAALTALGLGAGLLSARATHTYRDLENLLPFLFRLLFYLSGVLYSVDHFVADEALRALFAVNPLYCLVTTWRWALIGTEVSGLAWAGTVAWPTLFLITGFVAFRAREATYGG 281
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A6N8UQC1_9ACTN (Transport permease protein n=4 Tax=Acidimicrobiia TaxID=84992 RepID=A0A6N8UQC1_9ACTN) HSP 1 Score: 127 bits (319), Expect = 6.380e-33 Identity = 66/166 (39.76%), Postives = 91/166 (54.82%), Query Frame = 1
Query: 19 NLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
NL LIRS+ FPR ++P + FVPAL + + + TGE P+ RW L +L + G + AR G VPDL LLPH+ RLLFY SGV+F AF +E F LNP +++ RW + G VD W+ +AW + L+ GF FWR++ + G
Sbjct: 109 NLGLIRSVQFPRILLPAATVNGQTAAFVPALVLALAAVIATGERPSLRWLALIGVLAAQFVFNFGAALLVARIGAAVPDLRQLLPHVFRLLFYASGVIFSVDAFVTSEFWRRAFALNPIYDVITCARWCLLGEPVDSWVVAGMLAWGVVLLLVGFAVFWRSDQRLG 274
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A6G2JWP9_9ACTN (Transport permease protein n=3 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6G2JWP9_9ACTN) HSP 1 Score: 127 bits (320), Expect = 8.870e-33 Identity = 70/172 (40.70%), Postives = 93/172 (54.07%), Query Frame = 1
Query: 1 TKTIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
+ +I N+ LIRSI FPR ++P S FVPALA+ I + TGE PT RW VLP +L G + AR G +PDL +LPHL RLLFYGSGV+F AF ++ F LNP +++ RW + G VD W+ + W + GF F R+E + G
Sbjct: 133 STSITQNMGLIRSIQFPRILLPAASVNGQTAAFVPALALAILAVLATGELPTLRWLVLPAVLAAQLAFNFGTALLVARIGTTLPDLRQILPHLFRLLFYGSGVIFSVDAFVQSTAWRRAFALNPLYDVITCARWCLLGEPVDLWVVAGLVMWCVLMPAIGFAVFHRSEQRLG 304
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A7K2BTW9_9ACTN (Transport permease protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2BTW9_9ACTN) HSP 1 Score: 126 bits (316), Expect = 1.780e-32 Identity = 68/166 (40.96%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 19 NLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
NL LIRS+ FPR ++P + FVPAL + + V TGE P+ RW LP +L L G + AR G + DL LLPHL RLLFY SGV+F AF + F LNP +++ RW + G DGW+ +AW + V GFV F R+E + G
Sbjct: 109 NLGLIRSVQFPRILLPAATLNGQTAAFVPALVLAMVAVVATGERPSMRWLALPAVLAAQFLFNFGAALLVARIGASLSDLQQLLPHLFRLLFYASGVIFSVEAFVTSPAWRRAFALNPIYDVITCARWCLVGELADGWVVAGLLAWCIALPVIGFVVFHRSEQRLG 274
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A6B1B559_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1B559_9ACTN) HSP 1 Score: 125 bits (314), Expect = 5.180e-32 Identity = 69/170 (40.59%), Postives = 93/170 (54.71%), Query Frame = 1
Query: 7 TIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
+I NL LIRSI FPR ++P S FVPAL + + + TGE PT RW VLP +L+ G+ + AR G + DL +LPHL RLLFYGSGV+F AF ++ F LNP +++ RW + G VD W+ + W + GFV F R+E + G
Sbjct: 122 SITQNLGLIRSIQFPRILLPAASVNGQTAAFVPALVLALLAVLATGELPTLRWLVLPAVLVAQFAFNFGVALLVARIGTTMRDLRQILPHLFRLLFYGSGVIFSVDAFVQSTAWRRAFALNPVYDVITCARWCLLGEPVDLWVVAGLVLWCIVMPALGFVVFHRSEQRLG 291
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Match: A0A2E5NS57_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NS57_9ACTN) HSP 1 Score: 124 bits (312), Expect = 9.390e-32 Identity = 66/171 (38.60%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 4 KTIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAPTWRWAVLPLLLLMLALMTIGIVFMSARAGYEVPDLYSLLPHLLRLLFYGSGVLFDPAAFTKNETVLFVFNLNPFFEMCALMRWSITGRAVDGWIWGAAIAWTLFFLVAGFVYFWRAEIKYG 516
+++ N L+R++ FPRA +P+ SA+ L F P L VM+ + + G AP RW LP +LL L +G ++ARA + DL +LLP L RLLFY SGVL+ F +E + +F L+P + + + RW++ G V G +W + W + LV GFV F E YG
Sbjct: 115 RSVVSNAGLVRALRFPRAALPVGSAIGQLLSFAPVLVVMLAVTLAHGHAPNLRWISLPAILLALTAFGLGAGLLAARATHTYRDLENLLPFLFRLLFYLSGVLYSVDHFIDDEALRALFALDPLYCLITIWRWALIGTEVSGPVWAGTVIWPIITLVLGFVAFRSREATYG 285 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110685.2249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig110685.2249.1 >prot_M-pyrifera_M_contig110685.2249.1 ID=prot_M-pyrifera_M_contig110685.2249.1|Name=mRNA_M-pyrifera_M_contig110685.2249.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp TKTIYGNLYLIRSIYFPRAIVPLTSALENLYMFVPALAVMIGMAVITGEAback to top mRNA from alignment at M-pyrifera_M_contig110685:68..595- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig110685.2249.1 ID=mRNA_M-pyrifera_M_contig110685.2249.1|Name=mRNA_M-pyrifera_M_contig110685.2249.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig110685:68..595- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig110685:68..595- >mRNA_M-pyrifera_M_contig110685.2249.1 ID=mRNA_M-pyrifera_M_contig110685.2249.1|Name=mRNA_M-pyrifera_M_contig110685.2249.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig110685:68..595- (Macrocystis pyrifera P11B4 male)back to top |