mRNA_M-pyrifera_M_contig110509.2199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110509.2199.1
Unique NamemRNA_M-pyrifera_M_contig110509.2199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A1Z9RZH0_9EURY (Amidase domain-containing protein n=1 Tax=Euryarchaeota archaeon TMED255 TaxID=1986693 RepID=A0A1Z9RZH0_9EURY)

HSP 1 Score: 205 bits (522), Expect = 1.240e-60
Identity = 109/198 (55.05%), Postives = 135/198 (68.18%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIAEPRPERLDARLGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERYRGRYYGQAKNLA 594
            QGGSVRSPASWTG  GMKATR +VPY G +VME+SIDYIGP+T   A+NA  L VIA+P      +++G     +R+ L+ EG+ HP S+PQVD AVR+A  +LQ     V  +SVPAH  G   WGAIVSDG+  +L+L G GY  S  YS  L+D +S W  +L  MP+NAQ LILLG  LE+Y G YYG+AKN A
Sbjct:  191 QGGSVRSPASWTGTVGMKATRDLVPYDGAIVMESSIDYIGPITRTAAENADALXVIADPVARSFTSKIGDSCEHLRVALVQEGFDHPSSEPQVDQAVRNAGNLLQKKXVTVDSISVPAHLLGGYAWGAIVSDGFWNSLKLSGNGYXHSRNYSIDLYDGLSGWSDDLDLMPVNAQTLILLGYSLEKYXGYYYGKAKNYA 388          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A6L8EJJ8_9GAMM (Amidase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EJJ8_9GAMM)

HSP 1 Score: 191 bits (486), Expect = 3.130e-55
Identity = 101/201 (50.25%), Postives = 136/201 (67.66%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIAEP----RPERLDARLGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERYRGRYYGQAKNL 591
            QGGSVR PASWTG+ GMKATRGVVP++GG+ +EASI++IGP+T  VADNA  L V+A      RP+    RL Q   G++I ++ EG+  P S P VD  V  AA+    LGA V E+S+P H  G A+WG +V+DG  Q L+L G+G+N    YS  +  AM +W     +MPINA +++LLG++LE+Y GRYY ++KNL
Sbjct:  192 QGGSVRIPASWTGVVGMKATRGVVPFSGGVPIEASIEHIGPLTDTVADNARYLEVMAGSGEGDRPD-YTGRLEQGAAGLKIAVVKEGFGWPSSAPAVDRGVSAAASHFASLGATVEEISIPDHLTGPAVWGGVVTDGLWQTLKLNGVGFNHDDVYSPAMSAAMRNWTLRKSDMPINAALILLLGRYLEKYEGRYYARSKNL 391          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A6L8EJK2_9GAMM (Amidase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EJK2_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 3.810e-54
Identity = 102/206 (49.51%), Postives = 131/206 (63.59%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIA----------EPRPERLDARLGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERYRGRYYGQAKN 588
            Q GSVR P+S+ G  GMKAT G++PY G M MEA +D +GPMTA V DNA +L V+A          + R       LG+ + G++I ++ EG+ HPLS+P VD  V  AA    GLGAEVSEVS+P H DG+++WGAI+SDG    LR  GL  NT+G  S  L   MS W  +L   P+N  +++LLGKHLERY G YY +AKN
Sbjct:  192 QAGSVRIPSSFCGAYGMKATFGLLPYTGIMGMEAMLDNVGPMTANVGDNALMLEVLAGYDGMDSRQRQLRVHNYTEALGKDMTGMKIAVVREGFDHPLSEPDVDRCVLAAADRFAGLGAEVSEVSIPMHRDGVSLWGAIISDGLWDTLRSNGLAMNTNGFNSPALEKYMSGWQDKLAQFPVNLHMVLLLGKHLERYAGGYYARAKN 397          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A1G0K7Z6_9GAMM (Amidase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K7Z6_9GAMM)

HSP 1 Score: 188 bits (477), Expect = 7.500e-54
Identity = 103/209 (49.28%), Postives = 131/209 (62.68%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIAEPRPERLDAR------------LGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERYRGRYYGQAKNL 591
            Q GS+R P+SW G  GMK T G+VPY G + ME  +DY+GP+TA VADNA LL VIA P  ++LD R            L   + G+RIG+L EG+ HPLS+  VD  VR AA  L  LGA V +VSVP H DG+A+W  ++SD   Q + + G   NT G +S     AM +W  +L   P NA +L+LLGK+LERYRGRY  +AKNL
Sbjct:  192 QAGSIRIPSSWCGAVGMKPTHGLVPYTGILGMEGMLDYVGPITANVADNALLLQVIAGP--DQLDYRQRNVQVRPYAEALHARIAGLRIGILREGFGHPLSEADVDECVRAAAERLAALGATVRDVSVPMHTDGVAVWAGVISDALWQTMWMNGTPLNTDGVFSPAFGRAMEAWDRQLGRFPPNALMLLLLGKYLERYRGRYTAKAKNL 398          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A2D6ITK9_9GAMM (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2D6ITK9_9GAMM)

HSP 1 Score: 176 bits (446), Expect = 2.450e-49
Identity = 89/207 (43.00%), Postives = 136/207 (65.70%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIA-----EPRPERLDAR-----LGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERYRGRYYGQAKNL 591
            Q GSVR PASW+G  GMKAT G+VP+ G   +EA++D++GP+TA VADNA LL V+A     + R  +L  +     LG+P+ G+RIG++ EG+ HP S   V+  VR AAA  + LGA++SE+S+P H  G+AIW  ++ +    +L+ GG  +N  G YS    DAM  W + +  +P+N  +++L G++++R+ G+YY +A+NL
Sbjct:  192 QAGSVRIPASWSGAVGMKATHGLVPFTGVAGLEATMDHVGPITANVADNALLLEVLAGTDGLDSRQRQLSVQPYGESLGKPVTGMRIGVVREGFEHPHSSSTVNECVRTAAARFKELGADISEISIPMHFPGIAIWSGLLMEPVWHSLQTGGAQFNADGLYSPAFVDAMQDWQSRVEQVPVNLLMVMLFGQYMQRFGGQYYARARNL 398          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A3N5G3B7_9BURK (Amidase (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3N5G3B7_9BURK)

HSP 1 Score: 177 bits (449), Expect = 8.670e-49
Identity = 100/210 (47.62%), Postives = 136/210 (64.76%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIA-----EPRP-----ERLDARLGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLG-GLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLER-YRGRYYGQAKNLA 594
            QGGS+R P+ W GI GMKAT G+VPY G M +EA+ID++GPMTA VADNA LL VIA     +PR      ++    LG+ + G+RIG+LTEG+ H +S+P VD  VR+A+  L+ LGA V EVSV  H DG AIW AI  +G    +  G G+G+N  G Y+T L DA S+W A    +    ++ + +G++  R YRG +Y +A+NLA
Sbjct:  405 QGGSIRMPSGWCGIYGMKATHGLVPYTGVMPIEATIDHVGPMTATVADNALLLEVIAGTDGLDPRQYNVRVDKYTTALGRGVAGMRIGVLTEGFGHEVSEPDVDQKVREASGRLRSLGATVEEVSVAWHRDGPAIWTAIALEGLQAQMMYGNGMGFNWEGLYTTSLLDAHSNWRARANELSRTLKISMFVGEYFIRHYRGHFYAKAQNLA 614          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A523MJF6_9GAMM (Amidase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523MJF6_9GAMM)

HSP 1 Score: 174 bits (441), Expect = 2.910e-48
Identity = 90/207 (43.48%), Postives = 131/207 (63.29%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIA----------EPRPERLDARLGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERYRGRYYGQAKNL 591
            Q GSVR PASW+G  GMKAT G+VPY G   +EA++D++GP+T  VADNA LL V+A          +P  +     L +P+ G++IG+L EG+ HP S   V+  VR AAA    LGAEVSE+S+P H  G+AIW  ++ +    AL+ GG+ +N    YS    DAM  W +   ++P+N  +++L G+++ER+ G+YY +A+NL
Sbjct:  238 QAGSVRIPASWSGAVGMKATHGLVPYTGVAGLEATMDHVGPITTTVADNALLLEVLAGGDDLDHVGRQPIVQSYTRCLDEPVTGMKIGVLREGFEHPHSSSVVNECVRAAAARFTELGAEVSEISIPMHFPGIAIWSGLIMEPAWHALQTGGVQFNADAVYSPAFVDAMQDWQSRAEHVPVNLLMVMLFGRYMERFGGQYYARARNL 444          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: G9AIT8_RHIFH (Putative amidase n=1 Tax=Rhizobium fredii (strain HH103) TaxID=1117943 RepID=G9AIT8_RHIFH)

HSP 1 Score: 172 bits (435), Expect = 1.110e-47
Identity = 98/210 (46.67%), Postives = 132/210 (62.86%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIAEP-----------RPERLDARLGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLG-GLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERY-RGRYYGQAKNL 591
            QGGS+R+PAS+ GI G+K T G+VPY G M +E +ID++GPMT  VADNA +L VIA P           + +R    LGQ   G++IG+L EG+ HP S+P VD +VRDAA   + LGAEV EVSVP HH G AIW  +  +G ++ L  G G G+N  G Y T + DA S+W      +P + +  +L G+ + R  RGRYY +A+NL
Sbjct:  192 QGGSIRTPASYCGIVGLKPTWGLVPYTGAMPIELTIDHLGPMTRTVADNALMLEVIAGPDGLDPRQTALVKAQRYTRALGQSCAGLKIGVLKEGFGHPNSEPDVDQSVRDAANRFRDLGAEVEEVSVPMHHAGPAIWLVVAFEGATEQLMKGNGHGFNWKGLYVTSMIDAHSAWRQRADELPDSVKQTMLTGEWMIRTGRGRYYAKAQNL 401          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: UPI0003B6950F (amidase n=1 Tax=Nevskia ramosa TaxID=64002 RepID=UPI0003B6950F)

HSP 1 Score: 166 bits (421), Expect = 1.410e-45
Identity = 96/209 (45.93%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIAEPR---PERLDARLGQPLG-------GVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLG-GLGYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKH-LERYRGRYYGQAKNL 591
            QGGS+R P+SW G  GMKAT G+VPY+G M +EA++D+IGP+TA VADNA LL+VIA      P +++ R G  LG       G+RIG++ EG+ H  S+  VDAAVR AAA    LGA V EVS+P H  G+ IW +I  +G +  +  G G G+N  G Y T L  A  +W      +    ++ IL G H L++YRG +Y +A+NL
Sbjct:  190 QGGSIRMPSSWCGTVGMKATHGLVPYSGIMAIEATLDHIGPITATVADNALLLDVIAGSDGLDPRQIEVRRGDYLGALNQSVKGMRIGVVREGFGHANSEADVDAAVRKAAAQFGALGATVEEVSIPMHTVGMIIWSSIAHEGATTQMMHGNGFGFNWKGLYVTSLQRAHDAWRQRADELSDTVKLTILFGHHVLKKYRGHHYAKAQNL 398          
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Match: A0A5R8ZQX3_9PSED (Amidase n=2 Tax=Pseudomonas TaxID=286 RepID=A0A5R8ZQX3_9PSED)

HSP 1 Score: 166 bits (420), Expect = 1.750e-45
Identity = 95/213 (44.60%), Postives = 136/213 (63.85%), Query Frame = 1
Query:    1 QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNAALLNVIAEPRPERLDAR-------------LGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDAAAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGL-GYNTSGPYSTRLHDAMSSWPAELPNMPINAQVLILLGKHLER-YRGRYYGQAKNLA 594
            QGGSVR PA++ G+ GMK T G+VPY G M +E+++D++GP+TA V DNA +L V+A P  + LD R             LG+ + G+RIG+L EG+AH  S+P VD AVR+ A V + LGA V EVS+PAH  G AIW AI ++G S+ +  G   G+N  G Y T + +  + W     ++P   +   +LG+++ R YRGR+YG+A+NLA
Sbjct:  192 QGGSVRIPAAYCGVYGMKPTHGLVPYTGAMPIESTLDHLGPITASVRDNALMLEVLAGP--DGLDPRQNALAPAGGYLEALGRGVVGMRIGVLREGFAHANSEPVVDEAVRNTADVFRALGATVEEVSLPAHSQGPAIWLAIAAEGASEQMMKGNSHGFNWRGLYLTGMMEHHARWRERADDLPDTVKTTFILGEYVNRNYRGRFYGKAQNLA 402          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110509.2199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9RZH0_9EURY1.240e-6055.05Amidase domain-containing protein n=1 Tax=Euryarch... [more]
A0A6L8EJJ8_9GAMM3.130e-5550.25Amidase n=1 Tax=Gammaproteobacteria bacterium TaxI... [more]
A0A6L8EJK2_9GAMM3.810e-5449.51Amidase n=1 Tax=Gammaproteobacteria bacterium TaxI... [more]
A0A1G0K7Z6_9GAMM7.500e-5449.28Amidase domain-containing protein n=1 Tax=Gammapro... [more]
A0A2D6ITK9_9GAMM2.450e-4943.00Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
A0A3N5G3B7_9BURK8.670e-4947.62Amidase (Fragment) n=1 Tax=Burkholderiales bacteri... [more]
A0A523MJF6_9GAMM2.910e-4843.48Amidase n=1 Tax=Gammaproteobacteria bacterium TaxI... [more]
G9AIT8_RHIFH1.110e-4746.67Putative amidase n=1 Tax=Rhizobium fredii (strain ... [more]
UPI0003B6950F1.410e-4545.93amidase n=1 Tax=Nevskia ramosa TaxID=64002 RepID=U... [more]
A0A5R8ZQX3_9PSED1.750e-4544.60Amidase n=2 Tax=Pseudomonas TaxID=286 RepID=A0A5R8... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110509contigM-pyrifera_M_contig110509:4..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score169.9
Seed ortholog evalue1.2e-39
Seed eggNOG ortholog1122603.ATVI01000005_gene3264
Preferred nameamdA
KEGG rclassRC00010,RC00100,RC00950,RC01025
KEGG koko:K01426
KEGG ReactionR02540,R03096,R03180,R03909,R05551,R05590
KEGG Pathwayko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
EggNOG OGs1MUVQ@1224,1RP7E@1236,COG0154@1,COG0154@2
EC3.5.1.4
COG Functional cat.J
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size594
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.2614164-CDS-M-pyrifera_M_contig110509:3..5971622815616.2614164-CDS-M-pyrifera_M_contig110509:3..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110509 4..597 -
1692277488.994854-CDS-M-pyrifera_M_contig110509:3..5971692277488.994854-CDS-M-pyrifera_M_contig110509:3..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110509 4..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110509.2199.1prot_M-pyrifera_M_contig110509.2199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110509 4..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110509.2199.1

>prot_M-pyrifera_M_contig110509.2199.1 ID=prot_M-pyrifera_M_contig110509.2199.1|Name=mRNA_M-pyrifera_M_contig110509.2199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=198bp
QGGSVRSPASWTGICGMKATRGVVPYAGGMVMEASIDYIGPMTAGVADNA
ALLNVIAEPRPERLDARLGQPLGGVRIGLLTEGYAHPLSDPQVDAAVRDA
AAVLQGLGAEVSEVSVPAHHDGLAIWGAIVSDGYSQALRLGGLGYNTSGP
YSTRLHDAMSSWPAELPNMPINAQVLILLGKHLERYRGRYYGQAKNLA
back to top

mRNA from alignment at M-pyrifera_M_contig110509:4..597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110509.2199.1 ID=mRNA_M-pyrifera_M_contig110509.2199.1|Name=mRNA_M-pyrifera_M_contig110509.2199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig110509:4..597- (Macrocystis pyrifera P11B4 male)
CAGGGCGGTTCCGTCCGCTCGCCGGCAAGCTGGACCGGGATCTGCGGCAT GAAAGCAACGCGCGGCGTGGTCCCGTACGCCGGCGGTATGGTGATGGAAG CGTCGATCGATTATATCGGACCGATGACGGCGGGGGTCGCCGACAACGCG GCGCTGTTGAACGTGATTGCCGAACCGCGACCGGAGCGACTCGACGCGCG GCTCGGGCAACCGCTTGGCGGGGTGCGGATCGGCTTGCTCACGGAAGGCT ACGCGCACCCGCTGTCCGATCCGCAGGTCGACGCCGCGGTGCGCGACGCG GCCGCCGTATTGCAAGGTCTCGGCGCCGAGGTCAGCGAGGTTTCCGTACC GGCGCACCACGACGGGCTTGCGATCTGGGGCGCGATTGTCTCCGATGGCT ATTCGCAGGCGCTGAGACTGGGTGGTCTCGGTTACAACACGAGCGGTCCG TATTCGACCCGGTTGCACGACGCGATGTCATCGTGGCCGGCGGAGCTGCC GAACATGCCGATCAATGCCCAGGTATTGATATTGCTCGGCAAACACCTCG AGCGCTATCGCGGACGCTACTACGGGCAGGCGAAAAATCTCGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110509:4..597-

>mRNA_M-pyrifera_M_contig110509.2199.1 ID=mRNA_M-pyrifera_M_contig110509.2199.1|Name=mRNA_M-pyrifera_M_contig110509.2199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1188bp|location=Sequence derived from alignment at M-pyrifera_M_contig110509:4..597- (Macrocystis pyrifera P11B4 male)
CAGGGCGGTTCCGTCCGCTCGCCGGCAAGCTGGACCGGGATCTGCGGCAT
GAAAGCAACGCGCGGCGTGGTCCCGTACGCCGGCGGTATGGTGATGGAAG
CGTCGATCGATTATATCGGACCGATGACGGCGGGGGTCGCCGACAACGCG
GCGCTGTTGAACGTGATTGCCGAACCGCGACCGGAGCGACTCGACGCGCG
GCTCGGGCAACCGCTTGGCGGGGTGCGGATCGGCTTGCTCACGGAAGGCT
ACGCGCACCCGCTGTCCGATCCGCAGGTCGACGCCGCGGTGCGCGACGCG
GCCGCCGTATTGCAAGGTCTCGGCGCCGAGGTCAGCGAGGTTTCCGTACC
GGCGCACCACGACGGGCTTGCGATCTGGGGCGCGATTGTCTCCGATGGCT
ATTCGCAGGCGCTGAGACTGGGTGGTCTCGGTTACAACACGAGCGGTCCG
TATTCGACCCGGTTGCACGACGCGATGTCATCGTGGCCGGCGGAGCTGCC
GAACATGCCGATCAATGCCCAGGTATTGATATTGCTCGGCAAACACCTCG
AGCGCTATCGCGGACGCTACTACGGGCAGGCGAAAAATCTCGCGCAGGGC
GGTTCCGTCCGCTCGCCGGCAAGCTGGACCGGGATCTGCGGCATGAAAGC
AACGCGCGGCGTGGTCCCGTACGCCGGCGGTATGGTGATGGAAGCGTCGA
TCGATTATATCGGACCGATGACGGCGGGGGTCGCCGACAACGCGGCGCTG
TTGAACGTGATTGCCGAACCGCGACCGGAGCGACTCGACGCGCGGCTCGG
GCAACCGCTTGGCGGGGTGCGGATCGGCTTGCTCACGGAAGGCTACGCGC
ACCCGCTGTCCGATCCGCAGGTCGACGCCGCGGTGCGCGACGCGGCCGCC
GTATTGCAAGGTCTCGGCGCCGAGGTCAGCGAGGTTTCCGTACCGGCGCA
CCACGACGGGCTTGCGATCTGGGGCGCGATTGTCTCCGATGGCTATTCGC
AGGCGCTGAGACTGGGTGGTCTCGGTTACAACACGAGCGGTCCGTATTCG
ACCCGGTTGCACGACGCGATGTCATCGTGGCCGGCGGAGCTGCCGAACAT
GCCGATCAATGCCCAGGTATTGATATTGCTCGGCAAACACCTCGAGCGCT
ATCGCGGACGCTACTACGGGCAGGCGAAAAATCTCGCG
back to top