mRNA_M-pyrifera_M_contig110484.2191.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110484.2191.1
Unique NamemRNA_M-pyrifera_M_contig110484.2191.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A813IR15_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IR15_POLGL)

HSP 1 Score: 95.5 bits (236), Expect = 3.600e-20
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   31 PPYVCP-AGDVVEMDMYRFHEENDYD-IAQHNTADLMGEVQYLCTQLLGNA--DSQLSKFRVSVNTTWGQYGMC----NSGICSGGLAGTVGHESAGHFGT-PKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTISIDCI 465
            PP   P +  V  +D+YR     + D I   NT D +G++ +LC    G     S ++ +R++ NT+WGQY  C       +C GG    +G ES    G+ P  GQC  N   G+WFSL    +C  GE VGT GC W G +   ++I+  C+
Sbjct:  229 PPCSDPGSSQVTTLDLYRIRSAKEPDEIQNRNTGDALGDMAFLCLTEAGKMYRGSVITHWRLTANTSWGQYAYCAYIGGKNVCEGGTDRLMGRESGLGLGSGPLQGQCSENTDCGSWFSLPAAGQCRPGETVGTSGCTWGGAVA-LRSIAASCL 381          
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A813HW72_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HW72_POLGL)

HSP 1 Score: 95.5 bits (236), Expect = 4.210e-20
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   31 PPYVCP-AGDVVEMDMYRFHEENDYD-IAQHNTADLMGEVQYLCTQLLGNA--DSQLSKFRVSVNTTWGQYGMC----NSGICSGGLAGTVGHESAGHFGT-PKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTISIDCI 465
            PP   P +  V  +D+YR     + D I   NT D +G++ +LC    G     S ++ +R++ NT+WGQY  C       +C GG    +G ES    G+ P  GQC  N   G+WFSL    +C  GE VGT GC W G +   ++I+  C+
Sbjct:  259 PPCSDPGSSQVTTLDLYRIRSAKEPDEIQNRNTGDALGDMAFLCLTEAGKMYRGSVITHWRLTANTSWGQYAYCAYIGGKNVCEGGTDRLMGRESGLGLGSGPLQGQCSENTDCGSWFSLPAAGQCRPGETVGTSGCTWGGAVA-LRSIAASCL 411          
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A7S4NK87_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NK87_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 1.180e-19
Identity = 56/160 (35.00%), Postives = 84/160 (52.50%), Query Frame = 1
Query:    4 FTTPQLCLEPPYVCPAGDVVEMDMYRFHEENDYDIAQHNTADLMGEVQYLCTQLLGNAD---SQLSKFRVSVNTTWGQYGMCNSGICSGGLAGTVGHESAGHFG-TPKAGQCDANEG-IGNWFSLELESECASGEVVGTDG-CAWQGPIEWYKTISIDCI 465
            F  P +C  P  +CP   V ++++YR+H  +   +A  N A  +G   ++C     +A+   S +SK+ VSV+T WG YG+CN   C       VG E +  +G T  +GQC  +    G W+S    SEC SG  VG +  C+WQ   +  +TI IDC+
Sbjct:   97 FEIPDVCTPPGVICPGEGVQDLEVYRYHAAHLNSLADQNGASQIGVTAFICQAAGTDAEPTYSWISKYTVSVDTAWGNYGLCNLHNCWTLNPNAVGREYS--YGVTEDSGQCAPDSPTFGEWYSFTSVSECPSGVPVGPENNCSWQTK-QLLQTIDIDCL 253          
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A813JUZ1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JUZ1_POLGL)

HSP 1 Score: 94.7 bits (234), Expect = 1.200e-19
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   31 PPYVCP-AGDVVEMDMYRFHEENDYD-IAQHNTADLMGEVQYLCTQLLGNA--DSQLSKFRVSVNTTWGQYGMC----NSGICSGGLAGTVGHESAGHFGT-PKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTISIDCI 465
            PP   P +  V  +++YR     + D I   NT D +G++ +LC +  G     S ++ +R++ NT+WGQY  C        C GG    VG ES    G+ P  GQC  N   G+WFSL    +C  GE VGT GC W G +   ++I+  C+
Sbjct: 1072 PPCSDPGSSQVTTLNLYRIRSAKEPDEIQNRNTGDALGDMAFLCGETAGQMYNGSVITHWRLTANTSWGQYAYCVYIDGENTCLGGTDRLVGRESGFGLGSGPLQGQCSENADCGSWFSLPAAGQCGPGETVGTSGCTWGGAVA-LRSIAASCL 1224          
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A813IVK3_POLGL (Hypothetical protein n=4 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IVK3_POLGL)

HSP 1 Score: 92.8 bits (229), Expect = 3.190e-19
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   31 PPYVCP-AGDVVEMDMYRFHEENDYD-IAQHNTADLMGEVQYLCTQLLGNA--DSQLSKFRVSVNTTWGQYGMC----NSGICSGGLAGTVGHESAGHFGT-PKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTISIDCI 465
            PP   P +  V  +++YR     + D I   N+ D +G++ +LC +  G     S ++ +R++ NT+WGQY  C        C GG    VG ES    G+ P  GQC  N   G+WFSL    +C  GE VGT GC W G +   ++I+  C+
Sbjct:  218 PPCSDPGSSQVTTLNLYRIRSAKEPDEIQNRNSGDALGDMAFLCGETAGQMYNGSVITHWRLTANTSWGQYAYCVYVDGENTCLGGTDRLVGRESGFGLGSGPLQGQCSENADCGSWFSLPAAGQCRPGETVGTSGCTWGGAVA-LRSIAASCL 370          
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A7S2TW06_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TW06_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 8.690e-18
Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 1
Query:   13 PQLCLEPPYVC-PAGD-VVEMDMYRFHEENDYDIAQHNTADLMGEVQYLCTQLLGNADSQ-----LSKFRVSVNTTWGQYGMCNS--GICSGGLAGTVGHESAGHFGTPKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTISIDC 462
            P  C E P  C P  + V+ MD Y  H  + ++I   +TADL+G+  + C+ +  N         +S +R+SV+TTWGQY +CN   G+C G     VG E++      K GQC  N  +G W+S     +C S   +    C W    E  KTI++ C
Sbjct:  183 PAYCTEKPATCAPQTERVITMDHYIAHPPDHFNITDQDTADLLGDTVFTCSDVKRNHTKDDHYGVISHYRISVDTTWGQYALCNGYPGVCVGNEDFFVGREASMGI-KEKGGQCANNSDVGTWYSFPAAGQCQSRGDLDAHKCTWFIE-ERVKTINLTC 339          
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A813H7J5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H7J5_POLGL)

HSP 1 Score: 79.0 bits (193), Expect = 1.560e-15
Identity = 42/113 (37.17%), Postives = 58/113 (51.33%), Query Frame = 1
Query:  148 YLCTQLLGNA--DSQLSKFRVSVNTTWGQYGMC----NSGICSGGLAGTVGHESAGHFGT-PKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTISIDCI 465
            +LC +  G     S ++ +R++ NT+WGQY  C        C GG    VG ES    G+ P  GQC  N   G+WFSL    +C  GE VGT GC W G +   ++I+  C+
Sbjct:    3 FLCGETAGQMYKGSVITHWRLTANTSWGQYAYCVYIDGENTCLGGTDRLVGRESGFGLGSGPLQGQCSENADCGSWFSLPAAGQCGPGETVGTSGCTWGGAVA-LRSIAASCL 114          
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Match: A0A7S1A9W3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A9W3_NOCSC)

HSP 1 Score: 73.2 bits (178), Expect = 2.380e-12
Identity = 44/127 (34.65%), Postives = 60/127 (47.24%), Query Frame = 1
Query:  109 AQHNTADLMGEVQYLCTQLLGNADSQLSKFRVSVNTTWGQYGMCN-------SGICSGGLAGTVGHESAGHF--GTPKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTISIDC 462
            A  N  DL G+    C      +   ++++ V VN+++GQY +CN         +C GG    VG     H   G    GQC  N   G+WFS  +E +C SG  VGTDGC WQG +   K +   C
Sbjct:  184 AGQNVGDLRGQTMTACMY----SSPYIAEYEVVVNSSYGQYALCNYISNDDRGNVCVGG-GDAVGRAPWLHICHGKELCGQCTNNSDSGSWFSFPVEGQCKSGAHVGTDGCTWQGRLT--KIVDYHC 303          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110484.2191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A813IR15_POLGL3.600e-2035.06Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813HW72_POLGL4.210e-2035.06Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S4NK87_9EUKA1.180e-1935.00Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A813JUZ1_POLGL1.200e-1935.06Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813IVK3_POLGL3.190e-1934.42Hypothetical protein n=4 Tax=Polarella glacialis T... [more]
A0A7S2TW06_9EUKA8.690e-1833.96Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A813H7J5_POLGL1.560e-1537.17Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1A9W3_NOCSC2.380e-1234.65Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110484contigM-pyrifera_M_contig110484:3..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog946362.XP_004989176.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EJ6E@1,2SPEN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.859193-CDS-M-pyrifera_M_contig110484:2..4671622815615.859193-CDS-M-pyrifera_M_contig110484:2..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110484 3..467 -
1692277488.8020167-CDS-M-pyrifera_M_contig110484:2..4671692277488.8020167-CDS-M-pyrifera_M_contig110484:2..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110484 3..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110484.2191.1prot_M-pyrifera_M_contig110484.2191.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110484 3..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110484.2191.1

>prot_M-pyrifera_M_contig110484.2191.1 ID=prot_M-pyrifera_M_contig110484.2191.1|Name=mRNA_M-pyrifera_M_contig110484.2191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
VFTTPQLCLEPPYVCPAGDVVEMDMYRFHEENDYDIAQHNTADLMGEVQY
LCTQLLGNADSQLSKFRVSVNTTWGQYGMCNSGICSGGLAGTVGHESAGH
FGTPKAGQCDANEGIGNWFSLELESECASGEVVGTDGCAWQGPIEWYKTI
SIDCI
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mRNA from alignment at M-pyrifera_M_contig110484:3..467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110484.2191.1 ID=mRNA_M-pyrifera_M_contig110484.2191.1|Name=mRNA_M-pyrifera_M_contig110484.2191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig110484:3..467- (Macrocystis pyrifera P11B4 male)
GTCTTCACTACGCCACAGCTCTGCCTCGAGCCTCCCTATGTATGCCCCGC GGGCGACGTGGTGGAGATGGACATGTACCGATTCCACGAGGAGAACGACT ACGACATTGCACAGCATAACACTGCAGATCTCATGGGCGAAGTGCAGTAC CTCTGCACTCAGCTCTTGGGCAACGCCGACAGTCAACTGTCGAAGTTCCG CGTGTCTGTGAACACAACGTGGGGCCAGTACGGCATGTGCAACTCTGGCA TCTGCAGCGGAGGTTTGGCAGGTACTGTGGGCCATGAGTCAGCTGGCCAC TTTGGCACCCCCAAGGCAGGCCAGTGCGATGCCAATGAGGGCATTGGTAA TTGGTTCTCTCTCGAACTCGAGAGCGAGTGTGCCAGCGGAGAGGTAGTAG GCACGGACGGCTGTGCCTGGCAGGGCCCAATTGAGTGGTACAAGACCATC TCCATTGACTGTATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110484:3..467-

>mRNA_M-pyrifera_M_contig110484.2191.1 ID=mRNA_M-pyrifera_M_contig110484.2191.1|Name=mRNA_M-pyrifera_M_contig110484.2191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig110484:3..467- (Macrocystis pyrifera P11B4 male)
GTCTTCACTACGCCACAGCTCTGCCTCGAGCCTCCCTATGTATGCCCCGC
GGGCGACGTGGTGGAGATGGACATGTACCGATTCCACGAGGAGAACGACT
ACGACATTGCACAGCATAACACTGCAGATCTCATGGGCGAAGTGCAGTAC
CTCTGCACTCAGCTCTTGGGCAACGCCGACAGTCAACTGTCGAAGTTCCG
CGTGTCTGTGAACACAACGTGGGGCCAGTACGGCATGTGCAACTCTGGCA
TCTGCAGCGGAGGTTTGGCAGGTACTGTGGGCCATGAGTCAGCTGGCCAC
TTTGGCACCCCCAAGGCAGGCCAGTGCGATGCCAATGAGGGCATTGGTAA
TTGGTTCTCTCTCGAACTCGAGAGCGAGTGTGCCAGCGGAGAGGTAGTAG
GCACGGACGGCTGTGCCTGGCAGGGCCCAATTGAGTGGTACAAGACCATC
TCCATTGACTGTATCGTCTTCACTACGCCACAGCTCTGCCTCGAGCCTCC
CTATGTATGCCCCGCGGGCGACGTGGTGGAGATGGACATGTACCGATTCC
ACGAGGAGAACGACTACGACATTGCACAGCATAACACTGCAGATCTCATG
GGCGAAGTGCAGTACCTCTGCACTCAGCTCTTGGGCAACGCCGACAGTCA
ACTGTCGAAGTTCCGCGTGTCTGTGAACACAACGTGGGGCCAGTACGGCA
TGTGCAACTCTGGCATCTGCAGCGGAGGTTTGGCAGGTACTGTGGGCCAT
GAGTCAGCTGGCCACTTTGGCACCCCCAAGGCAGGCCAGTGCGATGCCAA
TGAGGGCATTGGTAATTGGTTCTCTCTCGAACTCGAGAGCGAGTGTGCCA
GCGGAGAGGTAGTAGGCACGGACGGCTGTGCCTGGCAGGGCCCAATTGAG
TGGTACAAGACCATCTCCATTGACTGTATC
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