mRNA_M-pyrifera_M_contig110364.2169.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110364.2169.1
Unique NamemRNA_M-pyrifera_M_contig110364.2169.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A3D5DEL6_9GAMM (tRNA modification GTPase MnmE n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DEL6_9GAMM)

HSP 1 Score: 173 bits (438), Expect = 1.310e-48
Identity = 92/197 (46.70%), Postives = 135/197 (68.53%), Query Frame = 1
Query:    7 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE-DGSQTLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLL 594
            LK++ V +EA IDFP++ I     + L++ +  V   I  L+  +  GAR+  G+ IAI+G PNVGKST+LN L+G DRAIV   PGTTRD+L+V+IE+DGL+VR++DTAG+RET   +E+EGVRRA++++ +ADA+ ++ T E D     +G+L +PVF +RNKIDL G    +    +   L +SAK   G+DL+
Sbjct:  163 LKSIHVVIEAMIDFPEDEIPLVTSTDLATRSNEVGLAIKRLIHKSERGARVKDGLSIAIIGRPNVGKSTLLNVLSGEDRAIVTREPGTTRDILTVDIELDGLLVRLYDTAGLRETESDVEKEGVRRAKEKVCEADAIFFVVTSEMDDLDEYVGDLTIPVFKIRNKIDLDGLEVMLEPLASGAYLQISAKQERGIDLI 359          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A2Z6E849_9GAMM (tRNA modification GTPase MnmE n=1 Tax=Aerosticca soli TaxID=2010829 RepID=A0A2Z6E849_9GAMM)

HSP 1 Score: 169 bits (428), Expect = 4.000e-47
Identity = 103/200 (51.50%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    7 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE--DGSQTLLGELNVPV-FVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 597
            L  +RVQLEAAIDFP+E I      AL +    ++ ++AAL A AR G RLN G+   IVG PN GKS++LN LAGS+RAIV A PGTTRDVL   IE+DG  + + DTAG+RET DP+EREGVRRAR ++  AD  L +   E  +G   LL E+      VV NKIDL G P  V +      L +SA+TG G+D LR
Sbjct:  163 LVTLRVQLEAAIDFPEEEIDFLADPALIAGLEVLRGELAALQAAARCGVRLNDGLRAVIVGRPNAGKSSLLNALAGSERAIVTAVPGTTRDVLREAIELDGFALSLADTAGLRETDDPVEREGVRRARLELERADLALLVTEAEHAEGDLALLAEVPAAARLVVVNKIDLDGSPAQVQMRAGVPWLWLSARTGEGLDALR 362          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A523P5K0_9PROT (GTP-binding protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P5K0_9PROT)

HSP 1 Score: 162 bits (411), Expect = 1.230e-46
Identity = 87/166 (52.41%), Postives = 115/166 (69.28%), Query Frame = 1
Query:  103 AVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE-DGSQTLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 597
            A+  Q+  L+A A  G +LN+G+DIAIVG PNVGKST+LN LAG DRAIV   PGTTRDVLS+++EI G++VR+HDTAG+R+  + +EREGVRRA+  I  +DAV Y+ T + D     +  L VP+F +RNKIDL     SV        + +SA+ G G+DLLR
Sbjct:    1 AIGDQLVQLIAKAVHGVKLNNGLDIAIVGRPNVGKSTLLNALAGEDRAIVSDEPGTTRDVLSMDLEIGGVLVRIHDTAGLRDANNAVEREGVRRAKLTIDQSDAVFYVVTSQSDPLSDYVAGLTVPIFTIRNKIDLDSLSASVEPRPEGAYIQISARYGCGIDLLR 166          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A7W8JMX1_9GAMM (tRNA modification GTPase MnmE n=2 Tax=unclassified Rhodanobacter TaxID=2621553 RepID=A0A7W8JMX1_9GAMM)

HSP 1 Score: 167 bits (423), Expect = 2.750e-46
Identity = 99/201 (49.25%), Postives = 130/201 (64.68%), Query Frame = 1
Query:    7 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE--DGSQTLLGEL--NVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 597
            L A+RV +EAAIDFP+E I      A++ +   VQA++A LL  AR G RLN G+ +AIVG PN GKS++LN LAGSDRAIV+A+ GTTRDVL  ++ +DG+++ + DTAG+RET D +EREGVRRA  ++  AD  L +   +  D    LL ++   V   V+ NKIDL   PP       R  L  SAKTG G+D LR
Sbjct:  173 LVALRVHIEAAIDFPEEEIDFLADPAINRQLVTVQAELAELLREARRGLRLNDGLRVAIVGRPNAGKSSLLNALAGSDRAIVNAAAGTTRDVLREQLSLDGIVLELADTAGLRETDDVVEREGVRRAHGELQRADVALLVTDAKQADADLALLVDVAEGVEQLVLVNKIDLDSAPPHGEQRDGRRWLWASAKTGVGLDALR 373          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: UPI001AE26245 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Frateuria flava TaxID=2821489 RepID=UPI001AE26245)

HSP 1 Score: 166 bits (421), Expect = 4.380e-46
Identity = 100/199 (50.25%), Postives = 130/199 (65.33%), Query Frame = 1
Query:   13 AVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYI--FTREDGSQTLLGEL--NVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 597
            A+RV +EAAIDFP+E I      A++ E  A++ Q+AALLA  R G RL  G+ +AIVG PN GKS++LN LA S+RAIV A  GTTRDVL   + +DG ++ + DTAG+RET D +EREGVRRAR ++A AD VL +      D    LL EL  +V   V+ NKIDL  +PP   +      L +SA+TG G+DLLR
Sbjct:  164 ALRVHVEAAIDFPEEEIDFLADPAIAHELDALRTQLAALLAETRRGVRLTDGLKVAIVGRPNAGKSSLLNALAQSERAIVTAIAGTTRDVLRETVSLDGAVLELADTAGLRETHDEVEREGVRRARAELARADLVLLVTDVAHADVDPDLLDELPTHVARLVIVNKIDLETQPPRAEMHAGLPHLWLSARTGEGLDLLR 362          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A257SLH3_9DELT (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE (Fragment) n=1 Tax=Deltaproteobacteria bacterium 21-66-5 TaxID=1970506 RepID=A0A257SLH3_9DELT)

HSP 1 Score: 162 bits (411), Expect = 2.580e-45
Identity = 97/202 (48.02%), Postives = 129/202 (63.86%), Query Frame = 1
Query:    7 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYI------FTREDGSQTLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLL 594
            L A+R+ +EAAIDFPDE I   G   ++   AA++A   AL A A  G+ L  G+ + I G PN GKS++LNRLAG + AIV   PGTTRD+L  +I +DGL + V DTAG+RE+ D +E+EGVRRA + I  AD VL +      F+ ED        LN+PV ++ NKIDLSG PP  +  G    +A+SAKTG G++LL
Sbjct:  167 LIALRMYVEAAIDFPDEEIDFLGDGTVAERFAAIRAYFDALNAGAVQGSLLREGMTVVIAGRPNAGKSSLLNRLAGHEAAIVTEIPGTTRDLLREQINLDGLPLHVIDTAGLRESGDVVEQEGVRRAWEAIRCADRVLLVVDDTQGFSAEDTRSLRQFPLNLPVTLIYNKIDLSGRPPESSESGASVYVALSAKTGQGLELL 368          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A7X0AP28_9GAMM (tRNA modification GTPase MnmE n=2 Tax=unclassified Rhodanobacter TaxID=2621553 RepID=A0A7X0AP28_9GAMM)

HSP 1 Score: 164 bits (416), Expect = 2.720e-45
Identity = 101/203 (49.75%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    4 TLKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFT--REDGSQTLLGEL--NVPVFVVRNKIDLSGEPP-SVAVDGNRYCLAVSAKTGAGMDLLR 597
            +L A+RV +EAAIDFP+E I      A++ +  AVQA++A LL     G RLN G+ +AIVG PN GKS++LN LAGSDRAIV+A+ GTTRDVL  ++  DG+++ + DTAG+RET D IEREGVRRA  ++  AD  L +    + D    LL ++  +V   V+ NKIDL G+ P S   DG R+  A SAKTG G++ LR
Sbjct:  168 SLIALRVHIEAAIDFPEEEIDFLADPAINRQLLAVQAELAELLRETLRGLRLNDGLRVAIVGRPNAGKSSLLNALAGSDRAIVNATAGTTRDVLREQLSFDGIVLELADTAGLRETDDDIEREGVRRAHSELHRADVALLVTDARQADDDLALLSDVPESVEQLVLVNKIDLDGDHPHSEQRDGRRWLWA-SAKTGEGLETLR 369          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A6G7VGL1_9GAMM (tRNA modification GTPase MnmE n=1 Tax=Caldichromatium japonicum TaxID=2699430 RepID=A0A6G7VGL1_9GAMM)

HSP 1 Score: 164 bits (415), Expect = 3.540e-45
Identity = 93/198 (46.97%), Postives = 132/198 (66.67%), Query Frame = 1
Query:   16 VRVQLEAAIDFPDEGISPAGLSA-LSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDG-SQTLLGEL--NVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 597
            +RV LEA +DFPDE +  A   A ++   +A+ AQ+  LLA A  G R+  G+++AI G PNVGKS++LN L GS+ AIV   PGTTRD+L  +I+I+GL + + DTAG+R T DP+EREGVRRA++ +  AD VL+++    G  + +   L   VP+  VRNKIDL GE P +  +G    +A+S KTG G++LL+
Sbjct:  167 LRVHLEATLDFPDEELDLADERAQVADGLSALIAQLDRLLAEAYEGQRIREGLNVAIAGAPNVGKSSLLNALCGSEAAIVTDIPGTTRDLLRFDIQIEGLPIHIIDTAGLRHTQDPVEREGVRRAQEAVQQADLVLWVYDAARGLDEGVCPSLAPRVPLIRVRNKIDLLGESPGIKAEGEEVEVALSVKTGGGLELLK 364          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A5B8RCF1_9ZZZZ (tRNA modification GTPase MnmE n=3 Tax=root TaxID=1 RepID=A0A5B8RCF1_9ZZZZ)

HSP 1 Score: 164 bits (415), Expect = 3.670e-45
Identity = 99/200 (49.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:   16 VRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDG----SQTLLGELNV--PVFVVRNKIDLSGEPPSVAVDGNRYC-LAVSAKTGAGMDLL 594
            +R  +EAAIDF DE I      ALS   AA++  +AA L  AR G  LN G+ +AIVG PN GKS++LNRLAGSD AIV   PGTTRDVL   + IDGL +++ DTAG+R++ DP+E+EGVRRAR+ +++A+ VL +    +G     + L GEL     + ++RNKIDLSG  P V   G     + +SA+TGAGMD+L
Sbjct:  166 LRAYVEAAIDFADEEIDFLDDPALSRRLAALRDTLAATLTEARRGRTLNEGLAVAIVGRPNAGKSSLLNRLAGSDAAIVTDIPGTTRDVLRERVSIDGLPLQIMDTAGLRDSDDPVEQEGVRRARRAVSEAEHVLLVVDDREGITEAERALAGELTAGTALTIIRNKIDLSGAVPGVEPAGELGPEVRLSARTGAGMDVL 365          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: T1C0Z6_9ZZZZ (tRNA modification GTPase TrmE n=2 Tax=mine drainage metagenome TaxID=410659 RepID=T1C0Z6_9ZZZZ)

HSP 1 Score: 162 bits (411), Expect = 1.450e-44
Identity = 98/204 (48.04%), Postives = 130/204 (63.73%), Query Frame = 1
Query:    1 ATLKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDGSQTLLGEL----NVPVFVVRNKIDLSGEPPSVAVDG-NRYCLAVSAKTGAGMDLLR 597
            A L   RVQ+EAA+DFPDE +      AL    A ++ Q+AA+LA AR G RL  G+ + +VG PN GKS++LN LAG DRAIV A PGTTRDVL +E+++DG+ + + DTAG+R   D IEREG RRA   +ADAD  L +   E     L        ++ V VV NKIDL G+P +   D  +   +A+SA++GAG+DLLR
Sbjct:  160 ALLTGARVQIEAALDFPDEKLELLADPALLGALAELRVQVAAVLAEARRGVRLARGMSVVLVGRPNTGKSSLLNALAGEDRAIVTAVPGTTRDVLRLELQLDGVRLDLADTAGLRAARDAIEREGTRRALAALADADLALLVSDAEHWIDDLAAMRAHAPDMAVLVVLNKIDLLGQPAARIEDAASPLRIALSARSGAGVDLLR 363          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DEL6_9GAMM1.310e-4846.70tRNA modification GTPase MnmE n=1 Tax=Gammaproteob... [more]
A0A2Z6E849_9GAMM4.000e-4751.50tRNA modification GTPase MnmE n=1 Tax=Aerosticca s... [more]
A0A523P5K0_9PROT1.230e-4652.41GTP-binding protein (Fragment) n=1 Tax=Proteobacte... [more]
A0A7W8JMX1_9GAMM2.750e-4649.25tRNA modification GTPase MnmE n=2 Tax=unclassified... [more]
UPI001AE262454.380e-4650.25tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A257SLH3_9DELT2.580e-4548.02tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A7X0AP28_9GAMM2.720e-4549.75tRNA modification GTPase MnmE n=2 Tax=unclassified... [more]
A0A6G7VGL1_9GAMM3.540e-4546.97tRNA modification GTPase MnmE n=1 Tax=Caldichromat... [more]
A0A5B8RCF1_9ZZZZ3.670e-4549.50tRNA modification GTPase MnmE n=3 Tax=root TaxID=1... [more]
T1C0Z6_9ZZZZ1.450e-4448.04tRNA modification GTPase TrmE n=2 Tax=mine drainag... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110364contigM-pyrifera_M_contig110364:3..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score165.6
Seed ortholog evalue2.3e-38
Seed eggNOG ortholog1121937.AUHJ01000008_gene2084
Preferred namemnmE
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650
KEGG ReactionR08701
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001510,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006457,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009268,GO:0009451,GO:0009628,GO:0009636,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0030488,GO:0030955,GO:0031420,GO:0032259,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0061077,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
EggNOG OGs1MUCQ@1224,1RN5S@1236,46440@72275,COG0486@1,COG0486@2
COG Functional cat.J
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size597
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.8233805-CDS-M-pyrifera_M_contig110364:2..5991622815614.8233805-CDS-M-pyrifera_M_contig110364:2..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110364 3..599 +
1692277488.3499315-CDS-M-pyrifera_M_contig110364:2..5991692277488.3499315-CDS-M-pyrifera_M_contig110364:2..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110364 3..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110364.2169.1prot_M-pyrifera_M_contig110364.2169.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110364 3..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110364.2169.1

>prot_M-pyrifera_M_contig110364.2169.1 ID=prot_M-pyrifera_M_contig110364.2169.1|Name=mRNA_M-pyrifera_M_contig110364.2169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=199bp
ATLKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSG
ARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIE
IDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDGSQ
TLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR
back to top

mRNA from alignment at M-pyrifera_M_contig110364:3..599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110364.2169.1 ID=mRNA_M-pyrifera_M_contig110364.2169.1|Name=mRNA_M-pyrifera_M_contig110364.2169.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig110364:3..599+ (Macrocystis pyrifera P11B4 male)
GCAACCCTGAAAGCCGTGAGAGTGCAGCTCGAAGCAGCGATCGACTTCCC GGACGAAGGTATCTCCCCGGCTGGATTATCCGCCCTGAGTTCCGAAACCG CCGCCGTTCAGGCACAAATAGCTGCGCTTCTTGCAACCGCGAGAAGCGGT GCCCGCCTTAACAGCGGCATCGATATTGCAATAGTCGGCGAACCAAACGT TGGCAAGTCAACGATCCTGAACCGGCTCGCCGGCAGCGACCGTGCGATCG TTCACGCATCTCCGGGTACTACCCGCGATGTGCTGTCCGTTGAAATCGAA ATCGACGGACTCATCGTCCGTGTTCACGACACTGCCGGAATCCGTGAGAC CGCGGACCCGATCGAACGTGAAGGTGTCAGGCGCGCGCGGCAGCAAATCG CCGACGCTGACGCCGTGCTGTACATCTTCACCCGGGAAGACGGGTCGCAA ACACTACTCGGCGAGCTCAACGTGCCGGTTTTTGTGGTCCGTAACAAGAT CGACCTGAGCGGAGAGCCGCCATCCGTTGCCGTTGACGGCAACCGCTACT GCCTTGCCGTTTCGGCGAAAACCGGTGCCGGTATGGACCTGCTGCGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110364:3..599+

>mRNA_M-pyrifera_M_contig110364.2169.1 ID=mRNA_M-pyrifera_M_contig110364.2169.1|Name=mRNA_M-pyrifera_M_contig110364.2169.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1194bp|location=Sequence derived from alignment at M-pyrifera_M_contig110364:3..599+ (Macrocystis pyrifera P11B4 male)
GCAACCCTGAAAGCCGTGAGAGTGCAGCTCGAAGCAGCGATCGACTTCCC
GGACGAAGGTATCTCCCCGGCTGGATTATCCGCCCTGAGTTCCGAAACCG
CCGCCGTTCAGGCACAAATAGCTGCGCTTCTTGCAACCGCGAGAAGCGGT
GCCCGCCTTAACAGCGGCATCGATATTGCAATAGTCGGCGAACCAAACGT
TGGCAAGTCAACGATCCTGAACCGGCTCGCCGGCAGCGACCGTGCGATCG
TTCACGCATCTCCGGGTACTACCCGCGATGTGCTGTCCGTTGAAATCGAA
ATCGACGGACTCATCGTCCGTGTTCACGACACTGCCGGAATCCGTGAGAC
CGCGGACCCGATCGAACGTGAAGGTGTCAGGCGCGCGCGGCAGCAAATCG
CCGACGCTGACGCCGTGCTGTACATCTTCACCCGGGAAGACGGGTCGCAA
ACACTACTCGGCGAGCTCAACGTGCCGGTTTTTGTGGTCCGTAACAAGAT
CGACCTGAGCGGAGAGCCGCCATCCGTTGCCGTTGACGGCAACCGCTACT
GCCTTGCCGTTTCGGCGAAAACCGGTGCCGGTATGGACCTGCTGCGTGCA
ACCCTGAAAGCCGTGAGAGTGCAGCTCGAAGCAGCGATCGACTTCCCGGA
CGAAGGTATCTCCCCGGCTGGATTATCCGCCCTGAGTTCCGAAACCGCCG
CCGTTCAGGCACAAATAGCTGCGCTTCTTGCAACCGCGAGAAGCGGTGCC
CGCCTTAACAGCGGCATCGATATTGCAATAGTCGGCGAACCAAACGTTGG
CAAGTCAACGATCCTGAACCGGCTCGCCGGCAGCGACCGTGCGATCGTTC
ACGCATCTCCGGGTACTACCCGCGATGTGCTGTCCGTTGAAATCGAAATC
GACGGACTCATCGTCCGTGTTCACGACACTGCCGGAATCCGTGAGACCGC
GGACCCGATCGAACGTGAAGGTGTCAGGCGCGCGCGGCAGCAAATCGCCG
ACGCTGACGCCGTGCTGTACATCTTCACCCGGGAAGACGGGTCGCAAACA
CTACTCGGCGAGCTCAACGTGCCGGTTTTTGTGGTCCGTAACAAGATCGA
CCTGAGCGGAGAGCCGCCATCCGTTGCCGTTGACGGCAACCGCTACTGCC
TTGCCGTTTCGGCGAAAACCGGTGCCGGTATGGACCTGCTGCGT
back to top