prot_M-pyrifera_M_contig110364.2169.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110364.2169.1
Unique Nameprot_M-pyrifera_M_contig110364.2169.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length199
Homology
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A3D5DEL6_9GAMM (tRNA modification GTPase MnmE n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DEL6_9GAMM)

HSP 1 Score: 173 bits (438), Expect = 1.310e-48
Identity = 92/197 (46.70%), Postives = 135/197 (68.53%), Query Frame = 0
Query:    3 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE-DGSQTLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLL 198
            LK++ V +EA IDFP++ I     + L++ +  V   I  L+  +  GAR+  G+ IAI+G PNVGKST+LN L+G DRAIV   PGTTRD+L+V+IE+DGL+VR++DTAG+RET   +E+EGVRRA++++ +ADA+ ++ T E D     +G+L +PVF +RNKIDL G    +    +   L +SAK   G+DL+
Sbjct:  163 LKSIHVVIEAMIDFPEDEIPLVTSTDLATRSNEVGLAIKRLIHKSERGARVKDGLSIAIIGRPNVGKSTLLNVLSGEDRAIVTREPGTTRDILTVDIELDGLLVRLYDTAGLRETESDVEKEGVRRAKEKVCEADAIFFVVTSEMDDLDEYVGDLTIPVFKIRNKIDLDGLEVMLEPLASGAYLQISAKQERGIDLI 359          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A2Z6E849_9GAMM (tRNA modification GTPase MnmE n=1 Tax=Aerosticca soli TaxID=2010829 RepID=A0A2Z6E849_9GAMM)

HSP 1 Score: 169 bits (428), Expect = 4.000e-47
Identity = 103/200 (51.50%), Postives = 128/200 (64.00%), Query Frame = 0
Query:    3 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE--DGSQTLLGELNVPV-FVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 199
            L  +RVQLEAAIDFP+E I      AL +    ++ ++AAL A AR G RLN G+   IVG PN GKS++LN LAGS+RAIV A PGTTRDVL   IE+DG  + + DTAG+RET DP+EREGVRRAR ++  AD  L +   E  +G   LL E+      VV NKIDL G P  V +      L +SA+TG G+D LR
Sbjct:  163 LVTLRVQLEAAIDFPEEEIDFLADPALIAGLEVLRGELAALQAAARCGVRLNDGLRAVIVGRPNAGKSSLLNALAGSERAIVTAVPGTTRDVLREAIELDGFALSLADTAGLRETDDPVEREGVRRARLELERADLALLVTEAEHAEGDLALLAEVPAAARLVVVNKIDLDGSPAQVQMRAGVPWLWLSARTGEGLDALR 362          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A523P5K0_9PROT (GTP-binding protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P5K0_9PROT)

HSP 1 Score: 162 bits (411), Expect = 1.230e-46
Identity = 87/166 (52.41%), Postives = 115/166 (69.28%), Query Frame = 0
Query:   35 AVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE-DGSQTLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 199
            A+  Q+  L+A A  G +LN+G+DIAIVG PNVGKST+LN LAG DRAIV   PGTTRDVLS+++EI G++VR+HDTAG+R+  + +EREGVRRA+  I  +DAV Y+ T + D     +  L VP+F +RNKIDL     SV        + +SA+ G G+DLLR
Sbjct:    1 AIGDQLVQLIAKAVHGVKLNNGLDIAIVGRPNVGKSTLLNALAGEDRAIVSDEPGTTRDVLSMDLEIGGVLVRIHDTAGLRDANNAVEREGVRRAKLTIDQSDAVFYVVTSQSDPLSDYVAGLTVPIFTIRNKIDLDSLSASVEPRPEGAYIQISARYGCGIDLLR 166          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A7W8JMX1_9GAMM (tRNA modification GTPase MnmE n=2 Tax=unclassified Rhodanobacter TaxID=2621553 RepID=A0A7W8JMX1_9GAMM)

HSP 1 Score: 167 bits (423), Expect = 2.750e-46
Identity = 99/201 (49.25%), Postives = 130/201 (64.68%), Query Frame = 0
Query:    3 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTRE--DGSQTLLGEL--NVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 199
            L A+RV +EAAIDFP+E I      A++ +   VQA++A LL  AR G RLN G+ +AIVG PN GKS++LN LAGSDRAIV+A+ GTTRDVL  ++ +DG+++ + DTAG+RET D +EREGVRRA  ++  AD  L +   +  D    LL ++   V   V+ NKIDL   PP       R  L  SAKTG G+D LR
Sbjct:  173 LVALRVHIEAAIDFPEEEIDFLADPAINRQLVTVQAELAELLREARRGLRLNDGLRVAIVGRPNAGKSSLLNALAGSDRAIVNAAAGTTRDVLREQLSLDGIVLELADTAGLRETDDVVEREGVRRAHGELQRADVALLVTDAKQADADLALLVDVAEGVEQLVLVNKIDLDSAPPHGEQRDGRRWLWASAKTGVGLDALR 373          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: UPI001AE26245 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Frateuria flava TaxID=2821489 RepID=UPI001AE26245)

HSP 1 Score: 166 bits (421), Expect = 4.380e-46
Identity = 100/199 (50.25%), Postives = 130/199 (65.33%), Query Frame = 0
Query:    5 AVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYI--FTREDGSQTLLGEL--NVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 199
            A+RV +EAAIDFP+E I      A++ E  A++ Q+AALLA  R G RL  G+ +AIVG PN GKS++LN LA S+RAIV A  GTTRDVL   + +DG ++ + DTAG+RET D +EREGVRRAR ++A AD VL +      D    LL EL  +V   V+ NKIDL  +PP   +      L +SA+TG G+DLLR
Sbjct:  164 ALRVHVEAAIDFPEEEIDFLADPAIAHELDALRTQLAALLAETRRGVRLTDGLKVAIVGRPNAGKSSLLNALAQSERAIVTAIAGTTRDVLRETVSLDGAVLELADTAGLRETHDEVEREGVRRARAELARADLVLLVTDVAHADVDPDLLDELPTHVARLVIVNKIDLETQPPRAEMHAGLPHLWLSARTGEGLDLLR 362          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A257SLH3_9DELT (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE (Fragment) n=1 Tax=Deltaproteobacteria bacterium 21-66-5 TaxID=1970506 RepID=A0A257SLH3_9DELT)

HSP 1 Score: 162 bits (411), Expect = 2.580e-45
Identity = 97/202 (48.02%), Postives = 129/202 (63.86%), Query Frame = 0
Query:    3 LKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYI------FTREDGSQTLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLL 198
            L A+R+ +EAAIDFPDE I   G   ++   AA++A   AL A A  G+ L  G+ + I G PN GKS++LNRLAG + AIV   PGTTRD+L  +I +DGL + V DTAG+RE+ D +E+EGVRRA + I  AD VL +      F+ ED        LN+PV ++ NKIDLSG PP  +  G    +A+SAKTG G++LL
Sbjct:  167 LIALRMYVEAAIDFPDEEIDFLGDGTVAERFAAIRAYFDALNAGAVQGSLLREGMTVVIAGRPNAGKSSLLNRLAGHEAAIVTEIPGTTRDLLREQINLDGLPLHVIDTAGLRESGDVVEQEGVRRAWEAIRCADRVLLVVDDTQGFSAEDTRSLRQFPLNLPVTLIYNKIDLSGRPPESSESGASVYVALSAKTGQGLELL 368          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A7X0AP28_9GAMM (tRNA modification GTPase MnmE n=2 Tax=unclassified Rhodanobacter TaxID=2621553 RepID=A0A7X0AP28_9GAMM)

HSP 1 Score: 164 bits (416), Expect = 2.720e-45
Identity = 101/203 (49.75%), Postives = 135/203 (66.50%), Query Frame = 0
Query:    2 TLKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFT--REDGSQTLLGEL--NVPVFVVRNKIDLSGEPP-SVAVDGNRYCLAVSAKTGAGMDLLR 199
            +L A+RV +EAAIDFP+E I      A++ +  AVQA++A LL     G RLN G+ +AIVG PN GKS++LN LAGSDRAIV+A+ GTTRDVL  ++  DG+++ + DTAG+RET D IEREGVRRA  ++  AD  L +    + D    LL ++  +V   V+ NKIDL G+ P S   DG R+  A SAKTG G++ LR
Sbjct:  168 SLIALRVHIEAAIDFPEEEIDFLADPAINRQLLAVQAELAELLRETLRGLRLNDGLRVAIVGRPNAGKSSLLNALAGSDRAIVNATAGTTRDVLREQLSFDGIVLELADTAGLRETDDDIEREGVRRAHSELHRADVALLVTDARQADDDLALLSDVPESVEQLVLVNKIDLDGDHPHSEQRDGRRWLWA-SAKTGEGLETLR 369          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A6G7VGL1_9GAMM (tRNA modification GTPase MnmE n=1 Tax=Caldichromatium japonicum TaxID=2699430 RepID=A0A6G7VGL1_9GAMM)

HSP 1 Score: 164 bits (415), Expect = 3.540e-45
Identity = 93/198 (46.97%), Postives = 132/198 (66.67%), Query Frame = 0
Query:    6 VRVQLEAAIDFPDEGISPAGLSA-LSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDG-SQTLLGEL--NVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR 199
            +RV LEA +DFPDE +  A   A ++   +A+ AQ+  LLA A  G R+  G+++AI G PNVGKS++LN L GS+ AIV   PGTTRD+L  +I+I+GL + + DTAG+R T DP+EREGVRRA++ +  AD VL+++    G  + +   L   VP+  VRNKIDL GE P +  +G    +A+S KTG G++LL+
Sbjct:  167 LRVHLEATLDFPDEELDLADERAQVADGLSALIAQLDRLLAEAYEGQRIREGLNVAIAGAPNVGKSSLLNALCGSEAAIVTDIPGTTRDLLRFDIQIEGLPIHIIDTAGLRHTQDPVEREGVRRAQEAVQQADLVLWVYDAARGLDEGVCPSLAPRVPLIRVRNKIDLLGESPGIKAEGEEVEVALSVKTGGGLELLK 364          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: A0A5B8RCF1_9ZZZZ (tRNA modification GTPase MnmE n=3 Tax=root TaxID=1 RepID=A0A5B8RCF1_9ZZZZ)

HSP 1 Score: 164 bits (415), Expect = 3.670e-45
Identity = 99/200 (49.50%), Postives = 132/200 (66.00%), Query Frame = 0
Query:    6 VRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDG----SQTLLGELNV--PVFVVRNKIDLSGEPPSVAVDGNRYC-LAVSAKTGAGMDLL 198
            +R  +EAAIDF DE I      ALS   AA++  +AA L  AR G  LN G+ +AIVG PN GKS++LNRLAGSD AIV   PGTTRDVL   + IDGL +++ DTAG+R++ DP+E+EGVRRAR+ +++A+ VL +    +G     + L GEL     + ++RNKIDLSG  P V   G     + +SA+TGAGMD+L
Sbjct:  166 LRAYVEAAIDFADEEIDFLDDPALSRRLAALRDTLAATLTEARRGRTLNEGLAVAIVGRPNAGKSSLLNRLAGSDAAIVTDIPGTTRDVLRERVSIDGLPLQIMDTAGLRDSDDPVEQEGVRRARRAVSEAEHVLLVVDDREGITEAERALAGELTAGTALTIIRNKIDLSGAVPGVEPAGELGPEVRLSARTGAGMDVL 365          
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Match: T1C0Z6_9ZZZZ (tRNA modification GTPase TrmE n=2 Tax=mine drainage metagenome TaxID=410659 RepID=T1C0Z6_9ZZZZ)

HSP 1 Score: 162 bits (411), Expect = 1.450e-44
Identity = 98/204 (48.04%), Postives = 130/204 (63.73%), Query Frame = 0
Query:    1 ATLKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSGARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIEIDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDGSQTLLGEL----NVPVFVVRNKIDLSGEPPSVAVDG-NRYCLAVSAKTGAGMDLLR 199
            A L   RVQ+EAA+DFPDE +      AL    A ++ Q+AA+LA AR G RL  G+ + +VG PN GKS++LN LAG DRAIV A PGTTRDVL +E+++DG+ + + DTAG+R   D IEREG RRA   +ADAD  L +   E     L        ++ V VV NKIDL G+P +   D  +   +A+SA++GAG+DLLR
Sbjct:  160 ALLTGARVQIEAALDFPDEKLELLADPALLGALAELRVQVAAVLAEARRGVRLARGMSVVLVGRPNTGKSSLLNALAGEDRAIVTAVPGTTRDVLRLELQLDGVRLDLADTAGLRAARDAIEREGTRRALAALADADLALLVSDAEHWIDDLAAMRAHAPDMAVLVVLNKIDLLGQPAARIEDAASPLRIALSARSGAGVDLLR 363          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110364.2169.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DEL6_9GAMM1.310e-4846.70tRNA modification GTPase MnmE n=1 Tax=Gammaproteob... [more]
A0A2Z6E849_9GAMM4.000e-4751.50tRNA modification GTPase MnmE n=1 Tax=Aerosticca s... [more]
A0A523P5K0_9PROT1.230e-4652.41GTP-binding protein (Fragment) n=1 Tax=Proteobacte... [more]
A0A7W8JMX1_9GAMM2.750e-4649.25tRNA modification GTPase MnmE n=2 Tax=unclassified... [more]
UPI001AE262454.380e-4650.25tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A257SLH3_9DELT2.580e-4548.02tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A7X0AP28_9GAMM2.720e-4549.75tRNA modification GTPase MnmE n=2 Tax=unclassified... [more]
A0A6G7VGL1_9GAMM3.540e-4546.97tRNA modification GTPase MnmE n=1 Tax=Caldichromat... [more]
A0A5B8RCF1_9ZZZZ3.670e-4549.50tRNA modification GTPase MnmE n=3 Tax=root TaxID=1... [more]
T1C0Z6_9ZZZZ1.450e-4448.04tRNA modification GTPase TrmE n=2 Tax=mine drainag... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 97..119
score: 23.31
coord: 57..78
score: 31.71
coord: 156..169
score: 42.33
NoneNo IPR availableGENE3D3.40.50.300coord: 54..199
e-value: 3.2E-38
score: 133.0
NoneNo IPR availablePANTHERPTHR42714:SF2TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIALcoord: 3..198
NoneNo IPR availablePANTHERPTHR42714FAMILY NOT NAMEDcoord: 3..198
IPR006073GTP binding domainPFAMPF01926MMR_HSR1coord: 58..166
e-value: 3.3E-21
score: 75.5
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 56..172
e-value: 5.7E-23
score: 79.5
IPR025867MnmE, helical domainPFAMPF12631MnmE_helicalcoord: 3..198
e-value: 3.7E-11
score: 43.8
IPR031168TrmE-type guanine nucleotide-binding domainPROSITEPS51709G_TRMEcoord: 56..199
score: 53.572
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 56..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110364contigM-pyrifera_M_contig110364:3..599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110364.2169.1mRNA_M-pyrifera_M_contig110364.2169.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110364 3..599 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110364.2169.1 ID=prot_M-pyrifera_M_contig110364.2169.1|Name=mRNA_M-pyrifera_M_contig110364.2169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=199bp
ATLKAVRVQLEAAIDFPDEGISPAGLSALSSETAAVQAQIAALLATARSG
ARLNSGIDIAIVGEPNVGKSTILNRLAGSDRAIVHASPGTTRDVLSVEIE
IDGLIVRVHDTAGIRETADPIEREGVRRARQQIADADAVLYIFTREDGSQ
TLLGELNVPVFVVRNKIDLSGEPPSVAVDGNRYCLAVSAKTGAGMDLLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP_binding_domain
IPR005225Small_GTP-bd_dom
IPR025867MnmE_helical
IPR031168G_TrmE
IPR027417P-loop_NTPase