mRNA_M-pyrifera_M_contig110222.2140.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110222.2140.1
Unique NamemRNA_M-pyrifera_M_contig110222.2140.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: H9X0W4_PINTA (J domain-containing protein (Fragment) n=3 Tax=Pinus TaxID=3337 RepID=H9X0W4_PINTA)

HSP 1 Score: 109 bits (273), Expect = 4.220e-29
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    7 HLLVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            H L AGVSVAAVALAS+  + AW AF+ RP  P  ++ Y GGF+  M+R EAALILGVR  V+ EKIK AHR++MV NHPD GGS ++A+K+NEAK+++
Sbjct:    1 HPLAAGVSVAAVALASKYAIEAWQAFKARPVVPRMRKFYEGGFQPVMTRREAALILGVRERVAMEKIKEAHRRVMVANHPDSGGSDYLASKINEAKDVM 99          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: A0A200PVG1_9MAGN (DnaJ domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PVG1_9MAGN)

HSP 1 Score: 109 bits (273), Expect = 5.020e-29
Identity = 58/97 (59.79%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   13 LVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            LVAGVSVAA AL  R +++AW AF+ RP  P  +R Y GGF+ KM+R EAALILG+R   + EKI+ AHR++MV NHPDRGGS ++A+K+NEAK++L
Sbjct:    9 LVAGVSVAAAALGGRYLIQAWQAFKARPVVPQMRRFYEGGFQQKMTRREAALILGIRERDALEKIRDAHRRVMVANHPDRGGSEYLASKINEAKDML 105          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: A0A803MEN4_CHEQI (J domain-containing protein n=5 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MEN4_CHEQI)

HSP 1 Score: 109 bits (272), Expect = 5.990e-29
Identity = 55/100 (55.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    1 MSHLLVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKRYRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            M+  L+AG++VAA ALA +  ++AW AF+ RP P P K + GGF+ KM+R EAALILG+R + +AEK+K AHRK+M+ NHPD GGS ++A+K+NEAK+++
Sbjct:    1 MAAPLIAGMTVAAAALAGKYGIQAWQAFKARP-PRPRKFFEGGFQPKMTRREAALILGIRESAAAEKVKEAHRKVMIANHPDAGGSHYLASKINEAKDMM 99          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: TI141_ARATH (Mitochondrial import inner membrane translocase subunit TIM14-1 n=11 Tax=Brassicaceae TaxID=3700 RepID=TI141_ARATH)

HSP 1 Score: 109 bits (272), Expect = 6.340e-29
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   16 VAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            +AGV+VAA ALA R  ++AW AF+ RP  P  K+ Y GGF+  M++ EAALILGVR +V+AEK+K AHRK+MV NHPD GGS F+A+K+NEAK+++
Sbjct:    6 IAGVAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEKVKEAHRKVMVANHPDAGGSHFLASKINEAKDVM 101          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: A0A6A3A3G2_HIBSY (Mitochondrial import inner membrane translocase subunit TIM14-3 n=9 Tax=Malvoideae TaxID=214907 RepID=A0A6A3A3G2_HIBSY)

HSP 1 Score: 108 bits (270), Expect = 1.860e-28
Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   13 LVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            L+AG++VAA A A R  +RAW AF+ RP     +R Y GGF+  M+R EAALILGVR + SAEKIK AHR++MV NHPD GGS F+A+K+NEAK+++
Sbjct:   17 LIAGIAVAAAAYAGRYSIRAWQAFKGRPPTARVRRFYEGGFQPSMTRREAALILGVRESTSAEKIKEAHRRVMVANHPDAGGSHFLASKINEAKDMM 113          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: C5WZ38_SORBI (J domain-containing protein n=7 Tax=Panicoideae TaxID=147369 RepID=C5WZ38_SORBI)

HSP 1 Score: 108 bits (269), Expect = 3.220e-28
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    1 MSHLLVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            M+  L+AG+SVAA AL  R ++RAW AFQ R   P  +R Y GGF+ +M+R EAALILGVR   + +KIK AHR++MV NHPD GGS ++A+K+NEAK++L
Sbjct:   21 MATPLIAGLSVAAAALGGRSMIRAWQAFQTRAAMPRVRRFYPGGFQGEMNRREAALILGVRERATLDKIKEAHRRVMVANHPDAGGSHYVASKINEAKDIL 121          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: A0A200QPC7_9MAGN (DnaJ domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QPC7_9MAGN)

HSP 1 Score: 107 bits (268), Expect = 4.690e-28
Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   13 LVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            LV GVSVAA AL  R +++AW AF+ RP  P  +R Y GGF+ KM+R EAALILG+R     EKI+ AHR++MV NHPDRGGS ++A+K+NEAK++L
Sbjct:   26 LVVGVSVAAAALGGRYLIQAWKAFKTRPVVPRVRRFYEGGFQQKMTRREAALILGIRERDVMEKIREAHRRVMVANHPDRGGSEYLASKINEAKDML 122          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: UPI00053C8D38 (mitochondrial import inner membrane translocase subunit TIM14-2 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8D38)

HSP 1 Score: 107 bits (266), Expect = 5.180e-28
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 1
Query:   13 LVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            +VAG++VAA A A +  M AW AF+ RP  P  +R Y GGF++ M+R EAALILGVR + +AEK+K AHR++MV NHPD GGS ++A+KVNEAK+L+
Sbjct:    5 IVAGIAVAAAAYAGKYGMEAWQAFKARPPRPRMRRFYEGGFQSTMTRREAALILGVRESTAAEKVKEAHRRVMVANHPDAGGSHYLASKVNEAKDLM 101          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: D8SC40_SELML (J domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SC40_SELML)

HSP 1 Score: 107 bits (266), Expect = 5.490e-28
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1
Query:   16 VAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            +AGV++AA A+A +  + AW AF+ RP  P  ++ Y GGF+  M+R EAALILGVR +V+ EKIK AHRK+MV NHPD GGS ++ATK+NEAK++L
Sbjct:    8 IAGVAIAAAAIAGKYGVEAWHAFRTRPAVPRLRKFYEGGFQPTMTRREAALILGVRESVAQEKIKEAHRKVMVANHPDAGGSDYLATKINEAKDVL 103          
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Match: M4E2M9_BRARP (J domain-containing protein n=13 Tax=Brassicaceae TaxID=3700 RepID=M4E2M9_BRARP)

HSP 1 Score: 107 bits (266), Expect = 5.650e-28
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 1
Query:   19 AGVSVAAVALASRPVMRAWVAFQNRPRPPPYKR-YRGGFEAKMSRNEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL 300
            AGV+VAA ALA R  ++AW AF+ RP  P  K+ Y GGF+  M++ EAALILG+R  V AEK+K AHRK+MV NHPD GGS F+A+K+NEAK+++
Sbjct:   10 AGVAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGIRENVPAEKVKEAHRKVMVANHPDAGGSHFLASKINEAKDVM 104          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110222.2140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H9X0W4_PINTA4.220e-2959.60J domain-containing protein (Fragment) n=3 Tax=Pin... [more]
A0A200PVG1_9MAGN5.020e-2959.79DnaJ domain n=1 Tax=Macleaya cordata TaxID=56857 R... [more]
A0A803MEN4_CHEQI5.990e-2955.00J domain-containing protein n=5 Tax=Chenopodium qu... [more]
TI141_ARATH6.340e-2959.38Mitochondrial import inner membrane translocase su... [more]
A0A6A3A3G2_HIBSY1.860e-2858.76Mitochondrial import inner membrane translocase su... [more]
C5WZ38_SORBI3.220e-2856.44J domain-containing protein n=7 Tax=Panicoideae Ta... [more]
A0A200QPC7_9MAGN4.690e-2858.76DnaJ domain n=1 Tax=Macleaya cordata TaxID=56857 R... [more]
UPI00053C8D385.180e-2857.73mitochondrial import inner membrane translocase su... [more]
D8SC40_SELML5.490e-2857.29J domain-containing protein n=2 Tax=Selaginella mo... [more]
M4E2M9_BRARP5.650e-2858.95J domain-containing protein n=13 Tax=Brassicaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110222contigM-pyrifera_M_contig110222:243..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.1
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog3702.AT2G35795.1
KEGG koko:K09539
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Mitochondrial import inner membrane translocase subunit
EggNOG OGs37UJ6@33090,3GIMY@35493,3HUI4@3699,COG2214@1,KOG0723@2759
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.468886-CDS-M-pyrifera_M_contig110222:242..4251622815613.468886-CDS-M-pyrifera_M_contig110222:242..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110222 243..425 +
1692277487.7598088-CDS-M-pyrifera_M_contig110222:242..4251692277487.7598088-CDS-M-pyrifera_M_contig110222:242..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110222 243..425 +
1622815613.4829006-CDS-M-pyrifera_M_contig110222:482..5991622815613.4829006-CDS-M-pyrifera_M_contig110222:482..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110222 483..599 +
1692277487.7693856-CDS-M-pyrifera_M_contig110222:482..5991692277487.7693856-CDS-M-pyrifera_M_contig110222:482..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110222 483..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110222.2140.1prot_M-pyrifera_M_contig110222.2140.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110222 243..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110222.2140.1

>prot_M-pyrifera_M_contig110222.2140.1 ID=prot_M-pyrifera_M_contig110222.2140.1|Name=mRNA_M-pyrifera_M_contig110222.2140.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MSHLLVAGVSVAAVALASRPVMRAWVAFQNRPRPPPYKRYRGGFEAKMSR
NEAALILGVRYTVSAEKIKAAHRKLMVLNHPDRGGSPFIATKVNEAKELL
back to top

mRNA from alignment at M-pyrifera_M_contig110222:243..599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110222.2140.1 ID=mRNA_M-pyrifera_M_contig110222.2140.1|Name=mRNA_M-pyrifera_M_contig110222.2140.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig110222:243..599+ (Macrocystis pyrifera P11B4 male)
ATGTCACATTTGCTTGTAGCCGGTGTCTCTGTTGCAGCAGTAGCCCTCGC TAGCAGGCCCGTGATGAGAGCTTGGGTTGCCTTCCAGAACCGACCCAGAC CGCCCCCTTACAAGCGGTACCGGGGTGGCTTCGAGGCGAAGATGTCTCGC AATGAGGCTGCACTGATATTGGGTGTCAGGTACGTCGGTGGCTGCCCGCT GCGCTCTGTTGTTTCTGAGGCTGACCGTGCGTGCAGGCAGACCGTGTCTG CAGAGAAGATCAAGGCAGCGCATCGCAAGTTGATGGTCCTGAACCACCCT GACAGGGGAGGTTCTCCTTTCATTGCTACAAAGGTCAACGAAGCAAAAGA GCTTCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110222:243..599+

>mRNA_M-pyrifera_M_contig110222.2140.1 ID=mRNA_M-pyrifera_M_contig110222.2140.1|Name=mRNA_M-pyrifera_M_contig110222.2140.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig110222:243..599+ (Macrocystis pyrifera P11B4 male)
ATGTCACATTTGCTTGTAGCCGGTGTCTCTGTTGCAGCAGTAGCCCTCGC
TAGCAGGCCCGTGATGAGAGCTTGGGTTGCCTTCCAGAACCGACCCAGAC
CGCCCCCTTACAAGCGGTACCGGGGTGGCTTCGAGGCGAAGATGTCTCGC
AATGAGGCTGCACTGATATTGGGTGTCAGGTACATGTCACATTTGCTTGT
AGCCGGTGTCTCTGTTGCAGCAGTAGCCCTCGCTAGCAGGCCCGTGATGA
GAGCTTGGGTTGCCTTCCAGAACCGACCCAGACCGCCCCCTTACAAGCGG
TACCGGGGTGGCTTCGAGGCGAAGATGTCTCGCAATGAGGCTGCACTGAT
ATTGGGTGTCAGGTACACCGTGTCTGCAGAGAAGATCAAGGCAGCGCATC
GCAAGTTGATGGTCCTGAACCACCCTGACAGGGGAGGTTCTCCTTTCATT
GCTACAAAGGTCAACGAAGCAAAAGAGCTTCTCACCGTGTCTGCAGAGAA
GATCAAGGCAGCGCATCGCAAGTTGATGGTCCTGAACCACCCTGACAGGG
GAGGTTCTCCTTTCATTGCTACAAAGGTCAACGAAGCAAAAGAGCTTCTC
back to top