mRNA_M-pyrifera_M_contig109690.2024.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109690.2024.1
Unique NamemRNA_M-pyrifera_M_contig109690.2024.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Match: A0A847GFM7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GFM7_9BACT)

HSP 1 Score: 144 bits (363), Expect = 5.300e-37
Identity = 79/183 (43.17%), Postives = 107/183 (58.47%), Query Frame = 1
Query:    1 GYNGYMKNGGEAFFGNAVEAISDVWNTVL-ARGEGVGT---SSDEALTWFLVDKIEYLLSVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMWETSLTASGPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQFLRALEYDRNSQAAAMKVKEVQAAI 537
            GY G++K GG A+F  AVE ++DVWNTVL +  +GV T    SD ALTW+ V+++EYL+ VK N+H AER  E F ++N    EAY KV D FY F        G+  W  +    GPER  +  KL+ HY++EG    + A  P A +  L  A   F +AL+YDR S+ AA  ++E   AI
Sbjct:  197 GYEGFLKQGGRAYFTRAVETVADVWNTVLNSEMDGVATLVKPSDRALTWYFVNEMEYLMRVKSNMHQAERVYENFEKVNPRLVEAYVKVGDIFYNFNTAESRLRGIEEWRKAYALGGPERAGIGKKLSAHYLAEGRAFLEKAGLPGATETDLNSALNAFEQALDYDRTSETAASLIQETNLAI 379          
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Match: A0A7Y5FE64_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5FE64_9BACT)

HSP 1 Score: 135 bits (340), Expect = 8.660e-34
Identity = 73/185 (39.46%), Postives = 111/185 (60.00%), Query Frame = 1
Query:    1 GYNGYMKNGGEAFFGNAVEAISDVWNTVLARGEGVGTS---SDEALTWFLVDKIEYLLSVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMWETSLTASGPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQFLRALEYDRNSQAAAMKVKEVQAAIEDK 546
            GY GY  +   A   ++VEA++DVW TV+ R EG  +    SD++LT +  +++ Y L  KKN+ +AERA + F+ +      AY+K+ D FY FGGE G D  ++ W  +LT  GP R  V+ KL+ HY++ G+     A +PNAPKDSL  A   F +ALE+D++++ A   + E Q  I ++
Sbjct:  193 GYAGYASSASPAMMQSSVEAVADVWFTVM-RPEGDSSDVKPSDKSLTAYFTEQVVYQLRTKKNLREAERAYKQFAELKTTSLAAYDKIGDAFYAFGGE-GRDRAVQEWTNALTLPGPGRNDVMKKLSQHYLNLGKAYLAAAPKPNAPKDSLPNALANFTKALEFDQSNEEAGQLINETQIQISER 375          
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Match: A0A7V2Y4V6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y4V6_9BACT)

HSP 1 Score: 130 bits (327), Expect = 5.750e-32
Identity = 74/200 (37.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    1 GYNGYMKNGGEAFFGNAVEAISDVWNTVLARGE---GVGTSSDEALTWFLVDKIEYLLSVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMWETSLTASGPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQFLRALEYDRNSQAAAMKVKEVQAAIEDKLEQQMTMMELVSSAQ 591
            GYNGY+K G    F   V+  +DVW T+L R E   G+ T S EA+ W+LV +I+YLL  KKN + A +A + F  +  +D  A + + D FY FG E     G+  W+T+   +G +RR +  KL+ HY   G+   + A +P A +  L  A   F RALEY++ + A A K+ E  AAI D+  ++   + +++SA+
Sbjct:  183 GYNGYLKEGAPNLFAQCVDTTADVWYTIL-RPEPDPGMATPSPEAVCWYLVREIQYLLEAKKNFYQATKAYDNFVSLGVHDAVAIDTIGDLFYAFGSEDAITRGVSEWQTAYDMAGADRRSIGKKLSAHYAKIGDAALEAAARPGASEQELPNALNAFTRALEYEQTNDAIADKITETNAAIADRKARRELNVSIIASAE 381          
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Match: A0A831XS03_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831XS03_9BACT)

HSP 1 Score: 128 bits (322), Expect = 3.130e-31
Identity = 67/199 (33.67%), Postives = 117/199 (58.79%), Query Frame = 1
Query:    1 GYNGYMKNGGEAFFGNAVEAISDVWNTVLARGEGVGTSSDE--ALTWFLVDKIEYLLSVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMWETSLTASGPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQFLRALEYDRNSQAAAMKVKEVQAAIEDKLEQQMTMMELVSSAQ 591
            G+ G++  GGEA+FG A+EA++D W T+L   E  G S+     L+ + + ++ YLL+ K+N++ A++A E F+  N      YE+V D +Y +G E   + G+R W  + + +GP R  V  KLA+HY   GE  F+ A  P + ++ L  A+     ALE++ + QA A  + +V  AI ++ E++   +++V++A+
Sbjct:  193 GFGGFLAKGGEAYFGRAIEAVTDAWYTMLRTEEDFGDSAPTQVVLSRYFLSEVAYLLNQKRNIYQADKAYEHFAAANPGLMNLYEEVGDLYYAYGTEAAKERGVREWRIAFSHAGPHRESVASKLANHYRRVGEAKFEHAFGPTSREEDLREAREAIQTALEFEPSRQALAQLLNDVNVAIAEREERRQLAVDIVAAAE 391          
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Match: A0A1V5YYZ8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YYZ8_9BACT)

HSP 1 Score: 127 bits (320), Expect = 6.340e-31
Identity = 70/201 (34.83%), Postives = 113/201 (56.22%), Query Frame = 1
Query:    4 YNGYMKNGGEAFFGNAVEAISDVWNTVL-----ARGEGVGTSSDEALTWFLVDKIEYLLSVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMWETSLTASGPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQFLRALEYDRNSQAAAMKVKEVQAAIEDKLEQQMTMMELVSSAQ 591
            YNGY+K GG+A+F  AVE ++DVWNTVL      R  G+   SD +L W+ V ++EYLL+VK N+   E   + F ++     +A E + D  Y +  +     G+  W+ +    G +R  +  KL+ HYM EG +    A QP+A +  L  AK  F  AL YDR+++AAA  ++E   AI ++ E+   ++ ++++ +
Sbjct:  198 YNGYLKQGGQAYFIRAVETVADVWNTVLQHEDTVRAFGLSRPSDRSLAWYFVQEMEYLLNVKDNMTQVEIVYKNFEKVGVGMTDAMEYIGDMLYAYPQKSVKLRGVAEWQKAFDMGGKDRLHLGSKLSAHYMQEGNDYLAHAAQPDAEETDLNNAKRAFEDALNYDRSNEAAAKLIQETDVAIRERNERLEVVLSIIATGE 398          
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Match: A0A1V6EZ64_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6EZ64_9BACT)

HSP 1 Score: 123 bits (308), Expect = 3.400e-29
Identity = 69/189 (36.51%), Postives = 107/189 (56.61%), Query Frame = 1
Query:    1 GYNGYMKNGGEAFFGNAVEAISDVWNTVL-----ARGEGVGTSSDEALTWFLVDKIEYLLSVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMWETSLTASGPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQFLRALEYDRNSQAAAMKVKEVQAAIEDKLE 552
            GY+G++K GG A+F  AVEA++DVW TVL     A G      S   LTW+ V+++EYL++ K N+   E+  + F R+N    EAYE++ D FY        + G+  W+ +   SGP R+ +  KL+ HYM+EG+   + A QP A    L  A   F  AL+++R ++ AA  +++   AI ++ E
Sbjct:  198 GYDGFLKQGGRAYFIRAVEAVADVWYTVLQEDAPAAGWSFPKPSPRTLTWYFVNEMEYLINEKSNMSQVEKVYDNFERVNPQLMEAYEQLGDIFYANEDAKVKERGVAEWQKAYNFSGPRRQELGKKLSSHYMNEGKFYLERAGQPIAEDTDLNTALEMFTSALDFNRLNEDAADLIQKTNVAIRERNE 386          
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Match: A0A7C3SV16_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3SV16_9BACT)

HSP 1 Score: 108 bits (271), Expect = 4.030e-24
Identity = 63/201 (31.34%), Postives = 107/201 (53.23%), Query Frame = 1
Query:    1 GYNGYMKNGGEAFFGNAVEAISDVWNTVLA-RGEGVGTS--SDEALTWFLVDKIEYLLSVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMWETSLTAS-GPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQFLRALEYDRNSQAAAMKVKEVQAAIEDKLEQQMTMMELVSSAQ 591
            GYNG +   G  +F   V  ISD+W TVL    EG+  S  SD    W+ V +IEYLL VKKN++ A++  E F++++ N  EA  ++ D FY           +++W ++   S G  R  +  KL ++Y  EG+  F  A QP   ++ L  A   F +A+E+DR+++     ++     I+++ E +  ++ ++S A+
Sbjct:  198 GYNGLLAKAGLDYFVRTVRTISDIWYTVLRPEDEGIWVSPPSDRTRAWYFVKEIEYLLDVKKNMYQADKIYENFTKLSTNPPEAVNRIGDAFYRLNDPQAKSRAVQLWRSAYVNSVGELRNSIAKKLGNYYFEEGQTKFTRAGQPGGKEEDLNDALYSFQQAIEFDRDNKQIVDMIQATYQEIKERTEYRNMLVAIISQAE 398          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109690.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A847GFM7_9BACT5.300e-3743.17Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7Y5FE64_9BACT8.660e-3439.46Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V2Y4V6_9BACT5.750e-3237.00Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A831XS03_9BACT3.130e-3133.67Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V5YYZ8_9BACT6.340e-3134.83Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V6EZ64_9BACT3.400e-2936.51Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C3SV16_9BACT4.030e-2431.34Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109690contigM-pyrifera_M_contig109690:6..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size582
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.2853057-UTR-M-pyrifera_M_contig109690:5..201622815607.2853057-UTR-M-pyrifera_M_contig109690:5..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109690 6..20 +
1692277484.9599216-UTR-M-pyrifera_M_contig109690:5..201692277484.9599216-UTR-M-pyrifera_M_contig109690:5..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109690 6..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.2955675-CDS-M-pyrifera_M_contig109690:20..6021622815607.2955675-CDS-M-pyrifera_M_contig109690:20..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109690 21..602 +
1692277484.9712656-CDS-M-pyrifera_M_contig109690:20..6021692277484.9712656-CDS-M-pyrifera_M_contig109690:20..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109690 21..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109690.2024.1prot_M-pyrifera_M_contig109690.2024.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109690 21..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109690.2024.1

>prot_M-pyrifera_M_contig109690.2024.1 ID=prot_M-pyrifera_M_contig109690.2024.1|Name=mRNA_M-pyrifera_M_contig109690.2024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
MKNGGEAFFGNAVEAISDVWNTVLARGEGVGTSSDEALTWFLVDKIEYLL
SVKKNVHDAERAQEMFSRINRNDFEAYEKVADYFYGFGGEMGTDVGLRMW
ETSLTASGPERRRVLGKLADHYMSEGEEVFQLAQQPNAPKDSLERAKVQF
LRALEYDRNSQAAAMKVKEVQAAIEDKLEQQMTMMELVSSAQEM
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mRNA from alignment at M-pyrifera_M_contig109690:6..602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109690.2024.1 ID=mRNA_M-pyrifera_M_contig109690.2024.1|Name=mRNA_M-pyrifera_M_contig109690.2024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig109690:6..602+ (Macrocystis pyrifera P11B4 male)
GGCTATAACGGCTATATGAAGAACGGTGGCGAAGCATTCTTTGGGAACGC GGTGGAAGCCATCTCAGACGTTTGGAATACCGTTCTGGCCAGGGGCGAAG GCGTCGGCACGTCATCGGATGAAGCACTCACATGGTTCTTGGTCGACAAA ATCGAATATTTGCTGAGCGTGAAGAAGAACGTGCATGACGCCGAACGGGC TCAGGAAATGTTTAGCCGAATCAACCGGAATGATTTCGAGGCGTACGAAA AAGTCGCCGACTACTTCTACGGTTTCGGCGGCGAGATGGGTACAGACGTC GGGCTTCGGATGTGGGAAACGTCGCTAACAGCTTCGGGACCGGAGCGTCG GCGTGTATTGGGAAAACTCGCTGATCACTACATGAGCGAAGGGGAAGAAG TGTTTCAGTTGGCCCAACAGCCCAATGCCCCAAAAGACTCTTTAGAGCGA GCAAAAGTCCAGTTTTTGCGTGCGTTGGAATACGACCGAAACAGTCAAGC TGCGGCCATGAAAGTCAAAGAAGTGCAGGCAGCCATCGAAGATAAACTTG AACAGCAGATGACCATGATGGAACTGGTCAGTAGTGCGCAAGAAATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109690:6..602+

>mRNA_M-pyrifera_M_contig109690.2024.1 ID=mRNA_M-pyrifera_M_contig109690.2024.1|Name=mRNA_M-pyrifera_M_contig109690.2024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig109690:6..602+ (Macrocystis pyrifera P11B4 male)
ATGAAGAACGGTGGCGAAGCATTCTTTGGGAACGCGGTGGAAGCCATCTC
AGACGTTTGGAATACCGTTCTGGCCAGGGGCGAAGGCGTCGGCACGTCAT
CGGATGAAGCACTCACATGGTTCTTGGTCGACAAAATCGAATATTTGCTG
AGCGTGAAGAAGAACGTGCATGACGCCGAACGGGCTCAGGAAATGTTTAG
CCGAATCAACCGGAATGATTTCGAGGCGTACGAAAAAGTCGCCGACTACT
TCTACGGTTTCGGCGGCGAGATGGGTACAGACGTCGGGCTTCGGATGTGG
GAAACGTCGCTAACAGCTTCGGGACCGGAGCGTCGGCGTGTATTGGGAAA
ACTCGCTGATCACTACATGAGCGAAGGGGAAGAAGTGTTTCAGTTGGCCC
AACAGCCCAATGCCCCAAAAGACTCTTTAGAGCGAGCAAAAGTCCAGTTT
TTGCGTGCGTTGGAATACGACCGAAACAGTCAAGCTGCGGCCATGAAAGT
CAAAGAAGTGCAGGCAGCCATCGAAGATAAACTTGAACAGCAGATGACCA
TGATGGAACTGGTCAGTAGTGCGCAAGAAATGATGAAGAACGGTGGCGAA
GCATTCTTTGGGAACGCGGTGGAAGCCATCTCAGACGTTTGGAATACCGT
TCTGGCCAGGGGCGAAGGCGTCGGCACGTCATCGGATGAAGCACTCACAT
GGTTCTTGGTCGACAAAATCGAATATTTGCTGAGCGTGAAGAAGAACGTG
CATGACGCCGAACGGGCTCAGGAAATGTTTAGCCGAATCAACCGGAATGA
TTTCGAGGCGTACGAAAAAGTCGCCGACTACTTCTACGGTTTCGGCGGCG
AGATGGGTACAGACGTCGGGCTTCGGATGTGGGAAACGTCGCTAACAGCT
TCGGGACCGGAGCGTCGGCGTGTATTGGGAAAACTCGCTGATCACTACAT
GAGCGAAGGGGAAGAAGTGTTTCAGTTGGCCCAACAGCCCAATGCCCCAA
AAGACTCTTTAGAGCGAGCAAAAGTCCAGTTTTTGCGTGCGTTGGAATAC
GACCGAAACAGTCAAGCTGCGGCCATGAAAGTCAAAGAAGTGCAGGCAGC
CATCGAAGATAAACTTGAACAGCAGATGACCATGATGGAACTGGTCAGTA
GTGCGCAAGAAATG
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