mRNA_M-pyrifera_M_contig109623.2016.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109623.2016.1
Unique NamemRNA_M-pyrifera_M_contig109623.2016.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109623.2016.1 vs. uniprot
Match: A0A8J6CFR3_DIALT (MFS domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFR3_DIALT)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-14
Identity = 59/191 (30.89%), Postives = 96/191 (50.26%), Query Frame = 1 
Query:    7 PFNFVRLFTKSPRLAKLNLLVALQALPANMGDVAQMFAKTKRGWGPQEVGKFQAALGLAAIMSGGLTGKLIQQFGKREYSTLSNLAAIVSYYVFGIADTSAKAYLGCGLSAFAQMRSAALGAMILRTGAAEGSGFGKMAADRANLTAVVKVVGPLLSSSLYSTGAKRGNEGLPYFFMVGLLVICQGLMFSI 579
            P    RLF  S RLA L+ L+ALQ LP    DV Q+ A      G  E  +    +G +++ + GL   LI++ G R+++ L+ ++  +  Y  G++ +   A L    +     RS  +  ++   G   G   G++A DRANL A+VKVVGP++ + LY+ G   G   LP+     L++    L + +
Sbjct:  246 PIACTRLFGASRRLALLSALLALQVLPFFTTDVLQVHALEAWRMGNAERTRLFTFVGASSVGANGLASALIRRLGLRDFTALAGVSHAL--YWAGVSHSGGAALLLALPTMLGGARSLGVSTLVTAEGTRAGLRQGQLAGDRANLFALVKVVGPIVYAQLYARGKAIGLPQLPFVLNAVLMLAAAMLSYRL 434
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109623.2016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J6CFR3_DIALT1.760e-1430.89MFS domain-containing protein n=1 Tax=Diacronema l... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109623contigM-pyrifera_M_contig109623:2..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog227086.JGI_V11_72365
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs2D4NP@1,2SVQX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size600
Cds size600
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.974671-CDS-M-pyrifera_M_contig109623:1..6011622815606.974671-CDS-M-pyrifera_M_contig109623:1..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109623 2..601 +
1692277484.8378057-CDS-M-pyrifera_M_contig109623:1..6011692277484.8378057-CDS-M-pyrifera_M_contig109623:1..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109623 2..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109623.2016.1prot_M-pyrifera_M_contig109623.2016.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109623 2..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109623.2016.1

>prot_M-pyrifera_M_contig109623.2016.1 ID=prot_M-pyrifera_M_contig109623.2016.1|Name=mRNA_M-pyrifera_M_contig109623.2016.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
VNPFNFVRLFTKSPRLAKLNLLVALQALPANMGDVAQMFAKTKRGWGPQE
VGKFQAALGLAAIMSGGLTGKLIQQFGKREYSTLSNLAAIVSYYVFGIAD
TSAKAYLGCGLSAFAQMRSAALGAMILRTGAAEGSGFGKMAADRANLTAV
VKVVGPLLSSSLYSTGAKRGNEGLPYFFMVGLLVICQGLMFSIPQKEWV*
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mRNA from alignment at M-pyrifera_M_contig109623:2..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109623.2016.1 ID=mRNA_M-pyrifera_M_contig109623.2016.1|Name=mRNA_M-pyrifera_M_contig109623.2016.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig109623:2..601+ (Macrocystis pyrifera P11B4 male)
GTGAACCCCTTCAACTTCGTCCGTCTCTTCACTAAGTCGCCTCGCCTGGC
GAAGCTGAACCTCCTTGTGGCACTCCAGGCGCTCCCTGCCAACATGGGCG
ACGTGGCGCAGATGTTCGCCAAGACCAAGCGGGGCTGGGGCCCCCAGGAA
GTGGGCAAGTTCCAGGCAGCTCTCGGCCTTGCGGCGATTATGTCGGGAGG
CCTCACTGGCAAGCTGATCCAGCAGTTTGGCAAGCGAGAGTACAGCACTC
TCTCCAACTTGGCAGCCATTGTGAGCTACTACGTGTTCGGCATTGCAGAC
ACTAGCGCGAAGGCCTACCTTGGATGTGGACTCTCTGCATTCGCTCAGAT
GAGGAGTGCGGCGCTGGGCGCTATGATTCTTCGCACTGGTGCAGCCGAGG
GCTCTGGGTTTGGAAAGATGGCAGCAGACAGGGCCAACCTGACCGCTGTG
GTCAAGGTGGTCGGCCCCTTGCTATCCTCCAGCCTTTACTCCACTGGCGC
GAAGCGTGGGAACGAGGGCCTCCCTTACTTCTTCATGGTGGGGCTCCTTG
TCATCTGTCAAGGCCTGATGTTCTCCATTCCTCAGAAGGAGTGGGTATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109623:2..601+

>mRNA_M-pyrifera_M_contig109623.2016.1 ID=mRNA_M-pyrifera_M_contig109623.2016.1|Name=mRNA_M-pyrifera_M_contig109623.2016.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig109623:2..601+ (Macrocystis pyrifera P11B4 male)
GTGAACCCCTTCAACTTCGTCCGTCTCTTCACTAAGTCGCCTCGCCTGGC
GAAGCTGAACCTCCTTGTGGCACTCCAGGCGCTCCCTGCCAACATGGGCG
ACGTGGCGCAGATGTTCGCCAAGACCAAGCGGGGCTGGGGCCCCCAGGAA
GTGGGCAAGTTCCAGGCAGCTCTCGGCCTTGCGGCGATTATGTCGGGAGG
CCTCACTGGCAAGCTGATCCAGCAGTTTGGCAAGCGAGAGTACAGCACTC
TCTCCAACTTGGCAGCCATTGTGAGCTACTACGTGTTCGGCATTGCAGAC
ACTAGCGCGAAGGCCTACCTTGGATGTGGACTCTCTGCATTCGCTCAGAT
GAGGAGTGCGGCGCTGGGCGCTATGATTCTTCGCACTGGTGCAGCCGAGG
GCTCTGGGTTTGGAAAGATGGCAGCAGACAGGGCCAACCTGACCGCTGTG
GTCAAGGTGGTCGGCCCCTTGCTATCCTCCAGCCTTTACTCCACTGGCGC
GAAGCGTGGGAACGAGGGCCTCCCTTACTTCTTCATGGTGGGGCTCCTTG
TCATCTGTCAAGGCCTGATGTTCTCCATTCCTCAGAAGGAGTGGGTATAG
GTGAACCCCTTCAACTTCGTCCGTCTCTTCACTAAGTCGCCTCGCCTGGC
GAAGCTGAACCTCCTTGTGGCACTCCAGGCGCTCCCTGCCAACATGGGCG
ACGTGGCGCAGATGTTCGCCAAGACCAAGCGGGGCTGGGGCCCCCAGGAA
GTGGGCAAGTTCCAGGCAGCTCTCGGCCTTGCGGCGATTATGTCGGGAGG
CCTCACTGGCAAGCTGATCCAGCAGTTTGGCAAGCGAGAGTACAGCACTC
TCTCCAACTTGGCAGCCATTGTGAGCTACTACGTGTTCGGCATTGCAGAC
ACTAGCGCGAAGGCCTACCTTGGATGTGGACTCTCTGCATTCGCTCAGAT
GAGGAGTGCGGCGCTGGGCGCTATGATTCTTCGCACTGGTGCAGCCGAGG
GCTCTGGGTTTGGAAAGATGGCAGCAGACAGGGCCAACCTGACCGCTGTG
GTCAAGGTGGTCGGCCCCTTGCTATCCTCCAGCCTTTACTCCACTGGCGC
GAAGCGTGGGAACGAGGGCCTCCCTTACTTCTTCATGGTGGGGCTCCTTG
TCATCTGTCAAGGCCTGATGTTCTCCATTCCTCAGAAGGAGTGGGTATAG
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