mRNA_M-pyrifera_M_contig109268.1937.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109268.1937.1
Unique NamemRNA_M-pyrifera_M_contig109268.1937.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: A0A7Y2N8B1_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8B1_9ACTN)

HSP 1 Score: 144 bits (364), Expect = 3.390e-38
Identity = 71/113 (62.83%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   46 LTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDWSTDDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWGDVEAG 384
            ++ GIVEP++IDSFN QDSEGFEV RL+FDGLTD+ SDL A+PAVA  W  +D   WTFNL+   TFHNG  VTAQSFI+ +  +A+PD  SDVSY G  +AGIEG+GDV +G
Sbjct:   73 VSQGIVEPSFIDSFNIQDSEGFEVGRLIFDGLTDFDSDLKAIPAVAESWDHEDFTVWTFNLKPGTTFHNGETVTAQSFINAFTYLASPDAASDVSYYGD-VAGIEGFGDVASG 184          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: A0A7C1UHQ2_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UHQ2_9ACTN)

HSP 1 Score: 110 bits (276), Expect = 7.960e-26
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   37 GGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDWSTDDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWG 369
            GG+L  G+ EP  I     +   G E+  LLFDGLT  G D  A+PAVA  W +DD   W F+LR D  F NG PVTAQSF+D + R+A+P   + ++  GSY+ GI GWG
Sbjct:  103 GGTLRVGLPEPAGISPATVEGLSGLEITDLLFDGLTSLGPDGRALPAVAETWESDDGAIWDFHLRSDAVFENGEPVTAQSFVDAFTRLADPRTSAPLAPLGSYVLGISGWG 213          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: A0A1M6WFS0_PSETH (Oligopeptide transport system substrate-binding protein n=2 Tax=Pseudonocardia thermophila TaxID=1848 RepID=A0A1M6WFS0_PSETH)

HSP 1 Score: 102 bits (255), Expect = 5.880e-23
Identity = 56/109 (51.38%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   37 GGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDWSTDDNVT-WTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIE 360
            GG    GI EPT ID +N Q+SEG  VA  LF GL     D   VP VATDWS +D+ + WTFNL+ +  FHNG  V A SF  GW RVA P++ S+VSY    I G E
Sbjct:   83 GGVFRLGITEPTAIDPYNVQESEGTSVANALFTGLVQVEPDGTVVPGVATDWSANDDCSQWTFNLKPNTHFHNGEVVDATSFKRGWERVAAPNSGSEVSYHLDVIQGYE 191          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: A0A132N4M2_9ACTN (Peptide ABC transporter substrate-binding protein n=2 Tax=Carbonactinospora thermoautotrophica TaxID=1469144 RepID=A0A132N4M2_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 7.520e-23
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   13 ESDGETDGGGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDWSTDDNVT-WTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWGDVEAG 384
            ES G+T  GG+   GIVEPT ID +N Q+SEG  VA  LF GL D  +D   VP +A   S +DN T WTF ++    F NG PV A++FI GW R A     SDV+Y   ++AGI+G+  ++AG
Sbjct:   41 ESSGKT--GGTFRLGIVEPTAIDPYNAQESEGILVAHQLFTGLVDVKADGTIVPKLAEQRSPNDNCTEWTFKIKQGTKFTNGEPVDAEAFIRGWTRAAKKSAASDVAY---HLAGIQGFDQLQAG 160          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: A0A4Y4K3K0_9ACTN (Peptide ABC transporter substrate-binding protein n=3 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A4Y4K3K0_9ACTN)

HSP 1 Score: 101 bits (252), Expect = 1.390e-22
Identity = 60/126 (47.62%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   10 GESDGETDGGGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDWS-TDDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWGDVEAG 384
            G   G    GGS   GI EP  ID +N Q+SEG  V   LF GL    +D   VPA+AT    + D  TWTF ++ D  F NG  V A+SFI GWNRVA     SDV+Y   ++AGIEG+GDV++G
Sbjct:   33 GSGKGSGKDGGSFRMGITEPVAIDPYNAQESEGILVTTNLFTGLYLPTADGQVVPALATSKKVSSDGKTWTFGIKKDTKFTNGEAVDAESFIRGWNRVAQKSAASDVAY---HMAGIEGFGDVQSG 155          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: UPI00140884F3 (ABC transporter substrate-binding protein n=1 Tax=Phytoactinopolyspora limicola TaxID=2715536 RepID=UPI00140884F3)

HSP 1 Score: 100 bits (250), Expect = 2.550e-22
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   25 ETDGGGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLN-AVPAVATDWSTDDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLS-DVSYQGSYI 348
            E + GG  +  + EP ++   N+ +  G  V   LF GLT    D   A   +ATDW TDDN+TWTFNLRDD TFHNG+PVTAQSF+D WN  A+PDN   + S+   ++
Sbjct:   44 EVEAGGEFSIYLCEPQFLVPGNSTEVCGSAVLEQLFSGLTAVDYDTGEAYGLIATDWETDDNITWTFNLRDDFTFHNGDPVTAQSFVDTWNWAADPDNAQQNASFYDKFV 153          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: A0A4V3FSD8_9PSEU (Oligopeptide transport system substrate-binding protein n=1 Tax=Actinophytocola oryzae TaxID=502181 RepID=A0A4V3FSD8_9PSEU)

HSP 1 Score: 100 bits (249), Expect = 3.700e-22
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   37 GGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDWSTDDNVT-WTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWGDVEAG 384
            GG+  +G+ EPT ID +N Q+SEG  V + LF GL          P VAT W  +D+ T WTF+L+    FHNG  VT+ SF  GW RVA  D+ S+V+Y   ++AGIEG+ +++AG
Sbjct:   59 GGTFRFGLTEPTAIDPYNAQESEGLLVTKYLFTGLIQVDPLGEVKPGVATKWEANDDCTEWTFDLKTGTKFHNGEEVTSASFKRGWERVAAKDSASEVAY---HLAGIEGFDEMQAG 172          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: UPI00167EE1AA (ABC transporter substrate-binding protein n=1 Tax=Streptomyces echinoruber TaxID=68898 RepID=UPI00167EE1AA)

HSP 1 Score: 100 bits (248), Expect = 4.910e-22
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 DTDGESDGETDG--GGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDW-STDDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWGDVEAG 384
            D  G S G   G  GG+   GI EP  ID +N Q+SEG  V   LF GL +  +D   VPA+AT   ++ D  TWTF ++    F NG PV AQ+FI GWNRVA     SDV+Y   ++AGIEG+ +++AG
Sbjct:   28 DNSGNSGGSGAGKNGGTFRMGITEPVAIDPYNAQESEGILVTDNLFTGLYEPTADGQVVPALATSKKASSDGKTWTFTIKKGTKFTNGEPVDAQAFIRGWNRVAQKSAASDVAY---HMAGIEGFDEIQAG 155          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: A0A7K3M7G7_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Phytoactinopolyspora mesophila TaxID=2650750 RepID=A0A7K3M7G7_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 6.480e-22
Identity = 61/134 (45.52%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 DTDGES-----DGETDGGGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLN-AVPAVATDWSTDDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWGDVEAG 384
            D DGE      D   + GG  T    EP ++   N+ +  G  V   LF GLT    + + A   VATDW TDDNVTWTFNLRDD TFHNG+PVTAQ+F D WN V +PDN    S   ++     G+ DV  G
Sbjct:   26 DDDGEPGADAPDEAAEAGGEFTAYTCEPQFLVPGNSTEVCGSMVLEQLFSGLTAVNYETSEAYGVVATDWDTDDNVTWTFNLRDDFTFHNGDPVTAQTFADTWNWVVDPDNAQQNS---NFFDNFVGYADVVEG 156          
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Match: UPI0006933DCE (peptide ABC transporter substrate-binding protein n=1 Tax=Streptomyces sp. NRRL S-118 TaxID=1463881 RepID=UPI0006933DCE)

HSP 1 Score: 98.6 bits (244), Expect = 1.710e-21
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   10 GESDGETDGGGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDYGSDLNAVPAVATDWST-DDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRVANPDNLSDVSYQGSYIAGIEGWGDVEAG 384
            G+    + GGG    GI EPT ID +N Q+SEG  VA  LF GL    ++   VPA+A   +T DD  TWTF ++    F NG PV A++F+ GW RVA+  + SDV+Y   ++AGI+G+ D+  G
Sbjct:   26 GDEGSNSKGGGVFRLGITEPTAIDPYNAQESEGMLVAHNLFTGLYKVKANGELVPALAESATTSDDGKTWTFKIKAGTKFTNGEPVDAEAFVRGWTRVASKASASDVAY---HMAGIQGYADLNGG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109268.1937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N8B1_9ACTN3.390e-3862.83ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A7C1UHQ2_9ACTN7.960e-2647.75ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1M6WFS0_PSETH5.880e-2351.38Oligopeptide transport system substrate-binding pr... [more]
A0A132N4M2_9ACTN7.520e-2347.20Peptide ABC transporter substrate-binding protein ... [more]
A0A4Y4K3K0_9ACTN1.390e-2247.62Peptide ABC transporter substrate-binding protein ... [more]
UPI00140884F32.550e-2247.27ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A4V3FSD8_9PSEU3.700e-2245.30Oligopeptide transport system substrate-binding pr... [more]
UPI00167EE1AA4.910e-2245.80ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A7K3M7G7_9ACTN6.480e-2245.52ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI0006933DCE1.710e-2143.65peptide ABC transporter substrate-binding protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109268contigM-pyrifera_M_contig109268:219..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.5
Seed ortholog evalue5.9e-19
Seed eggNOG ortholog1463881.KL591021_gene899
KEGG koko:K15580
KEGG TC3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25
KEGG Pathwayko01501,ko02010,ko02024,map01501,map02010,map02024
KEGG ModuleM00439
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC transporter substrate-binding protein
EggNOG OGs2GIUH@201174,COG4166@1,COG4166@2
COG Functional cat.E
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.6081696-CDS-M-pyrifera_M_contig109268:218..6021622815602.6081696-CDS-M-pyrifera_M_contig109268:218..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109268 219..602 +
1692277482.8280153-CDS-M-pyrifera_M_contig109268:218..6021692277482.8280153-CDS-M-pyrifera_M_contig109268:218..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109268 219..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109268.1937.1prot_M-pyrifera_M_contig109268.1937.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109268 219..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109268.1937.1

>prot_M-pyrifera_M_contig109268.1937.1 ID=prot_M-pyrifera_M_contig109268.1937.1|Name=mRNA_M-pyrifera_M_contig109268.1937.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
DTDGESDGETDGGGSLTYGIVEPTWIDSFNTQDSEGFEVARLLFDGLTDY
GSDLNAVPAVATDWSTDDNVTWTFNLRDDVTFHNGNPVTAQSFIDGWNRV
ANPDNLSDVSYQGSYIAGIEGWGDVEAG
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mRNA from alignment at M-pyrifera_M_contig109268:219..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109268.1937.1 ID=mRNA_M-pyrifera_M_contig109268.1937.1|Name=mRNA_M-pyrifera_M_contig109268.1937.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig109268:219..602+ (Macrocystis pyrifera P11B4 male)
GACACCGACGGCGAGTCCGACGGCGAGACCGACGGTGGTGGGTCGCTGAC CTACGGCATCGTCGAACCCACGTGGATCGACTCGTTCAACACCCAGGACT CGGAAGGCTTCGAGGTTGCTCGACTGCTGTTCGACGGTCTCACCGACTAC GGCTCGGACCTCAACGCGGTTCCCGCGGTGGCGACCGACTGGTCGACCGA CGACAACGTCACCTGGACGTTCAACCTGCGTGACGACGTCACCTTCCACA ACGGCAACCCGGTGACCGCCCAGTCGTTCATCGACGGTTGGAACCGTGTT GCGAACCCGGACAACCTGTCCGACGTCTCGTACCAGGGCTCCTACATCGC CGGCATCGAAGGCTGGGGCGACGTCGAAGCCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109268:219..602+

>mRNA_M-pyrifera_M_contig109268.1937.1 ID=mRNA_M-pyrifera_M_contig109268.1937.1|Name=mRNA_M-pyrifera_M_contig109268.1937.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig109268:219..602+ (Macrocystis pyrifera P11B4 male)
GACACCGACGGCGAGTCCGACGGCGAGACCGACGGTGGTGGGTCGCTGAC
CTACGGCATCGTCGAACCCACGTGGATCGACTCGTTCAACACCCAGGACT
CGGAAGGCTTCGAGGTTGCTCGACTGCTGTTCGACGGTCTCACCGACTAC
GGCTCGGACCTCAACGCGGTTCCCGCGGTGGCGACCGACTGGTCGACCGA
CGACAACGTCACCTGGACGTTCAACCTGCGTGACGACGTCACCTTCCACA
ACGGCAACCCGGTGACCGCCCAGTCGTTCATCGACGGTTGGAACCGTGTT
GCGAACCCGGACAACCTGTCCGACGTCTCGTACCAGGGCTCCTACATCGC
CGGCATCGAAGGCTGGGGCGACGTCGAAGCCGGTGACACCGACGGCGAGT
CCGACGGCGAGACCGACGGTGGTGGGTCGCTGACCTACGGCATCGTCGAA
CCCACGTGGATCGACTCGTTCAACACCCAGGACTCGGAAGGCTTCGAGGT
TGCTCGACTGCTGTTCGACGGTCTCACCGACTACGGCTCGGACCTCAACG
CGGTTCCCGCGGTGGCGACCGACTGGTCGACCGACGACAACGTCACCTGG
ACGTTCAACCTGCGTGACGACGTCACCTTCCACAACGGCAACCCGGTGAC
CGCCCAGTCGTTCATCGACGGTTGGAACCGTGTTGCGAACCCGGACAACC
TGTCCGACGTCTCGTACCAGGGCTCCTACATCGCCGGCATCGAAGGCTGG
GGCGACGTCGAAGCCGGT
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