mRNA_M-pyrifera_M_contig106797.1458.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106797.1458.1
Unique NamemRNA_M-pyrifera_M_contig106797.1458.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106797.1458.1 vs. uniprot
Match: A0A7S4E0C0_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E0C0_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 7.690e-5
Identity = 39/121 (32.23%), Postives = 52/121 (42.98%), Query Frame = 1 
Query:   13 DGVGTLEYTIAERGKEELADKW----EDARVSGSRRPQELVVRVKLPDGVNVQSLDVDSGRRFLLIQQEVEXXXXXXXXXXXXKSYSPLLHLRKLPYPIHHEKTKCKWKKATRTLVFTLQV 363
            DG    EYTI ERG +    +     E   V G+RRPQ LVVR+K+P   N + +D+D   + L    E                  P      LPYP+  +    K+KK    LV TL +
Sbjct:  304 DGKLKPEYTITERGSQAADQRLQFTSERFEVLGARRPQNLVVRIKIPQVKNTKDMDLDIDEKRLKFHAE------------------PYALDILLPYPVLPDNGSAKYKKICTMLVVTLPI 406
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106797.1458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4E0C0_9EUKA7.690e-532.23Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106797contigM-pyrifera_M_contig106797:253..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.7442677-CDS-M-pyrifera_M_contig106797:252..6151622815577.7442677-CDS-M-pyrifera_M_contig106797:252..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106797 253..615 -
1692277471.9421637-CDS-M-pyrifera_M_contig106797:252..6151692277471.9421637-CDS-M-pyrifera_M_contig106797:252..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106797 253..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106797.1458.1prot_M-pyrifera_M_contig106797.1458.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106797 253..615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106797.1458.1

>prot_M-pyrifera_M_contig106797.1458.1 ID=prot_M-pyrifera_M_contig106797.1458.1|Name=mRNA_M-pyrifera_M_contig106797.1458.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MRPGDGVGTLEYTIAERGKEELADKWEDARVSGSRRPQELVVRVKLPDGV
NVQSLDVDSGRRFLLIQQEVEGGKKEGGGEEEKKSYSPLLHLRKLPYPIH
HEKTKCKWKKATRTLVFTLQV
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mRNA from alignment at M-pyrifera_M_contig106797:253..615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106797.1458.1 ID=mRNA_M-pyrifera_M_contig106797.1458.1|Name=mRNA_M-pyrifera_M_contig106797.1458.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig106797:253..615- (Macrocystis pyrifera P11B4 male)
ATGAGGCCTGGAGATGGAGTGGGTACACTGGAGTATACTATTGCAGAGAG
AGGGAAAGAAGAGCTTGCGGACAAGTGGGAAGATGCAAGAGTGAGTGGAA
GTCGTAGACCACAAGAATTGGTTGTTCGCGTCAAGTTGCCTGATGGAGTC
AATGTGCAATCCTTGGATGTAGATTCAGGGAGAAGATTTCTCCTGATCCA
GCAAGAAGTTGAAGGAGGGAAAAAGGAGGGTGGTGGGGAAGAGGAGAAAA
AATCTTACTCTCCACTTCTTCATCTCCGCAAACTACCCTATCCAATTCAC
CATGAGAAAACCAAGTGCAAATGGAAGAAGGCAACCAGGACTCTGGTCTT
CACTCTCCAAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106797:253..615-

>mRNA_M-pyrifera_M_contig106797.1458.1 ID=mRNA_M-pyrifera_M_contig106797.1458.1|Name=mRNA_M-pyrifera_M_contig106797.1458.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig106797:253..615- (Macrocystis pyrifera P11B4 male)
ATGAGGCCTGGAGATGGAGTGGGTACACTGGAGTATACTATTGCAGAGAG
AGGGAAAGAAGAGCTTGCGGACAAGTGGGAAGATGCAAGAGTGAGTGGAA
GTCGTAGACCACAAGAATTGGTTGTTCGCGTCAAGTTGCCTGATGGAGTC
AATGTGCAATCCTTGGATGTAGATTCAGGGAGAAGATTTCTCCTGATCCA
GCAAGAAGTTGAAGGAGGGAAAAAGGAGGGTGGTGGGGAAGAGGAGAAAA
AATCTTACTCTCCACTTCTTCATCTCCGCAAACTACCCTATCCAATTCAC
CATGAGAAAACCAAGTGCAAATGGAAGAAGGCAACCAGGACTCTGGTCTT
CACTCTCCAAGTAATGAGGCCTGGAGATGGAGTGGGTACACTGGAGTATA
CTATTGCAGAGAGAGGGAAAGAAGAGCTTGCGGACAAGTGGGAAGATGCA
AGAGTGAGTGGAAGTCGTAGACCACAAGAATTGGTTGTTCGCGTCAAGTT
GCCTGATGGAGTCAATGTGCAATCCTTGGATGTAGATTCAGGGAGAAGAT
TTCTCCTGATCCAGCAAGAAGTTGAAGGAGGGAAAAAGGAGGGTGGTGGG
GAAGAGGAGAAAAAATCTTACTCTCCACTTCTTCATCTCCGCAAACTACC
CTATCCAATTCACCATGAGAAAACCAAGTGCAAATGGAAGAAGGCAACCA
GGACTCTGGTCTTCACTCTCCAAGTA
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