mRNA_M-pyrifera_M_contig106700.1444.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106700.1444.1
Unique NamemRNA_M-pyrifera_M_contig106700.1444.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106700.1444.1 vs. uniprot
Match: A0A2E7KCS2_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCS2_9PLAN)

HSP 1 Score: 80.5 bits (197), Expect = 4.350e-14
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 LLHLYAKAFARSGDGNKAVEVAQQIANLDLREKTLISIPGQI 126
            LLHLYAKAFARSGDGNKAVEVAQQIANLDLRE+TLISIPG+I
Sbjct:  228 LLHLYAKAFARSGDGNKAVEVAQQIANLDLREETLISIPGEI 269
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BLAST of mRNA_M-pyrifera_M_contig106700.1444.1 vs. uniprot
Match: A0A517V650_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V650_9PLAN)

HSP 1 Score: 73.9 bits (180), Expect = 7.750e-12
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    4 LHLYAKAFARSGDGNKAVEVAQQIANLDLREKTLISIPGQI 126
            LHLYAKAFARSGD NKAVEVAQQIANLDLRE+T+ISI GQI
Sbjct:  211 LHLYAKAFARSGDSNKAVEVAQQIANLDLREETIISISGQI 251
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BLAST of mRNA_M-pyrifera_M_contig106700.1444.1 vs. uniprot
Match: A0A355GDR1_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GDR1_9PLAN)

HSP 1 Score: 71.6 bits (174), Expect = 4.780e-11
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 LLHLYAKAFARSGDGNKAVEVAQQIANLDLREKTLISIPGQIA 129
            LL+LY+KAFARSGD +KAVE+AQQI NLDLRE+T+ISIPGQIA
Sbjct:  206 LLYLYSKAFARSGDSDKAVEMAQQIMNLDLREETMISIPGQIA 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106700.1444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KCS2_9PLAN4.350e-1495.24Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517V650_9PLAN7.750e-1290.24Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A355GDR1_9PLAN4.780e-1181.40Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106700contigM-pyrifera_M_contig106700:1..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size624
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.0935285-CDS-M-pyrifera_M_contig106700:0..6241622815577.0935285-CDS-M-pyrifera_M_contig106700:0..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106700 1..624 -
1692277471.621996-CDS-M-pyrifera_M_contig106700:0..6241692277471.621996-CDS-M-pyrifera_M_contig106700:0..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106700 1..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106700.1444.1prot_M-pyrifera_M_contig106700.1444.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106700 1..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106700.1444.1

>prot_M-pyrifera_M_contig106700.1444.1 ID=prot_M-pyrifera_M_contig106700.1444.1|Name=mRNA_M-pyrifera_M_contig106700.1444.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
LLHLYAKAFARSGDGNKAVEVAQQIANLDLREKTLISIPGQIAKTGDVKQ
ALNFVETIPDRNSQSQALRQVTLVLARSNACNLALSLTEQITNEEIRFQA
LEGIVLELAKAGRGKQALDVVRQILFLHRRPWFLRALAKSLVGTGHLNQA
LEVAPLIEGSGEQSTYLMEVAIAVAEQGKSKQALEVVQQIPQRETKENAL
AKVASALL
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mRNA from alignment at M-pyrifera_M_contig106700:1..624-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106700.1444.1 ID=mRNA_M-pyrifera_M_contig106700.1444.1|Name=mRNA_M-pyrifera_M_contig106700.1444.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig106700:1..624- (Macrocystis pyrifera P11B4 male)
CTTCTGCATCTGTATGCGAAAGCGTTTGCGCGGTCGGGAGACGGTAACAA
GGCTGTCGAAGTGGCACAACAGATCGCGAATCTCGATCTCCGTGAAAAAA
CGCTGATTTCCATTCCAGGGCAAATTGCGAAAACCGGAGATGTCAAGCAG
GCTCTGAACTTTGTCGAGACTATTCCAGATCGGAACTCTCAATCGCAGGC
GCTCCGGCAAGTAACACTGGTTCTAGCCAGGTCAAATGCCTGTAACCTGG
CGCTGTCGTTGACTGAGCAGATTACCAATGAGGAAATCCGATTCCAGGCA
CTGGAAGGGATTGTGCTGGAGCTCGCGAAAGCAGGCAGGGGCAAGCAGGC
ATTGGACGTCGTTCGGCAGATTCTGTTTTTACATCGTCGGCCCTGGTTTT
TACGTGCACTGGCGAAATCGCTGGTGGGGACAGGCCATCTGAATCAGGCC
CTCGAAGTGGCTCCATTGATTGAGGGTTCTGGTGAGCAGTCAACCTACCT
GATGGAAGTGGCGATCGCGGTCGCAGAGCAGGGTAAGTCAAAACAGGCAC
TGGAGGTCGTGCAGCAAATCCCCCAGCGAGAGACGAAGGAGAACGCGCTG
GCCAAGGTTGCTTCCGCGCTATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106700:1..624-

>mRNA_M-pyrifera_M_contig106700.1444.1 ID=mRNA_M-pyrifera_M_contig106700.1444.1|Name=mRNA_M-pyrifera_M_contig106700.1444.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig106700:1..624- (Macrocystis pyrifera P11B4 male)
CTTCTGCATCTGTATGCGAAAGCGTTTGCGCGGTCGGGAGACGGTAACAA
GGCTGTCGAAGTGGCACAACAGATCGCGAATCTCGATCTCCGTGAAAAAA
CGCTGATTTCCATTCCAGGGCAAATTGCGAAAACCGGAGATGTCAAGCAG
GCTCTGAACTTTGTCGAGACTATTCCAGATCGGAACTCTCAATCGCAGGC
GCTCCGGCAAGTAACACTGGTTCTAGCCAGGTCAAATGCCTGTAACCTGG
CGCTGTCGTTGACTGAGCAGATTACCAATGAGGAAATCCGATTCCAGGCA
CTGGAAGGGATTGTGCTGGAGCTCGCGAAAGCAGGCAGGGGCAAGCAGGC
ATTGGACGTCGTTCGGCAGATTCTGTTTTTACATCGTCGGCCCTGGTTTT
TACGTGCACTGGCGAAATCGCTGGTGGGGACAGGCCATCTGAATCAGGCC
CTCGAAGTGGCTCCATTGATTGAGGGTTCTGGTGAGCAGTCAACCTACCT
GATGGAAGTGGCGATCGCGGTCGCAGAGCAGGGTAAGTCAAAACAGGCAC
TGGAGGTCGTGCAGCAAATCCCCCAGCGAGAGACGAAGGAGAACGCGCTG
GCCAAGGTTGCTTCCGCGCTATTGCTTCTGCATCTGTATGCGAAAGCGTT
TGCGCGGTCGGGAGACGGTAACAAGGCTGTCGAAGTGGCACAACAGATCG
CGAATCTCGATCTCCGTGAAAAAACGCTGATTTCCATTCCAGGGCAAATT
GCGAAAACCGGAGATGTCAAGCAGGCTCTGAACTTTGTCGAGACTATTCC
AGATCGGAACTCTCAATCGCAGGCGCTCCGGCAAGTAACACTGGTTCTAG
CCAGGTCAAATGCCTGTAACCTGGCGCTGTCGTTGACTGAGCAGATTACC
AATGAGGAAATCCGATTCCAGGCACTGGAAGGGATTGTGCTGGAGCTCGC
GAAAGCAGGCAGGGGCAAGCAGGCATTGGACGTCGTTCGGCAGATTCTGT
TTTTACATCGTCGGCCCTGGTTTTTACGTGCACTGGCGAAATCGCTGGTG
GGGACAGGCCATCTGAATCAGGCCCTCGAAGTGGCTCCATTGATTGAGGG
TTCTGGTGAGCAGTCAACCTACCTGATGGAAGTGGCGATCGCGGTCGCAG
AGCAGGGTAAGTCAAAACAGGCACTGGAGGTCGTGCAGCAAATCCCCCAG
CGAGAGACGAAGGAGAACGCGCTGGCCAAGGTTGCTTCCGCGCTATTG
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