mRNA_M-pyrifera_M_contig106630.1432.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: A0A0E0J3G6_ORYNI (Structural maintenance of chromosomes protein 5 n=1 Tax=Oryza nivara TaxID=4536 RepID=A0A0E0J3G6_ORYNI) HSP 1 Score: 80.5 bits (197), Expect = 1.480e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRV-SVMGVDSVRESVSQHPNVADHLMQKYRLTWLDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFIG 498 EVYGPVL+EVNI D+ H + P Y F+ Q SDR L F++ + V + MG +R ++ N+ + Q + LD+ FEAPPAV L + A + +G T ++ V + G+ +TP + Y +SR+G + S +V + S+ F+G Sbjct: 321 EVYGPVLLEVNIQDKAHASYLEGHVPNYIWKPFITQDASDRDLLVRQFKKYDIPVLNYMGDKGIR---TEPFNITMEMQQVGIYSRLDQVFEAPPAVKDVLISQAKLDHSYVGTNE-TQNRADDVPKLGMSDFWTPNNHYRWSRSRYGG-HLSALVDDVNPSRYFMG 482
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: B8BL58_ORYSI (Structural maintenance of chromosomes protein 5 n=5 Tax=Oryza TaxID=4527 RepID=B8BL58_ORYSI) HSP 1 Score: 79.7 bits (195), Expect = 2.780e-14 Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRV-SVMGVDSVRESVSQHPNVADHLMQKYRLTWLDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFIG 498 EVYGPVL+EVNI D+ H + P Y F+ Q SDR L F++ + V + MG +R ++ N+ + Q + LD+ FEAPPAV L + A + +G T ++ V + G+ +TP + Y +SR+G + S +V + S+ F+G Sbjct: 392 EVYGPVLLEVNIQDKAHASYLEGHVPNYIWKSFITQDASDRDLLVRQFKKYDIPVLNYMGDKGMR---TEPFNITMEMQQVGIYSRLDQVFEAPPAVKDVLISQAKLDHSYVGTDE-TQNRADDVPKLGMSDFWTPNNHYRWSRSRYGG-HLSALVDDVNPSRYFMG 553
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: A0A396HWV1_MEDTR (Putative structural maintenance of chromosomes protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396HWV1_MEDTR) HSP 1 Score: 75.5 bits (184), Expect = 2.240e-13 Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRVSVMGVDSVRESVSQHPNVADHLMQKYRLTW-LDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFI 495 EVYGPVL+EVN+ DQ H + Q Y+ F+ Q DR L + QH V V+ R+S + P+ M+ + + LD+ F+AP AV + L + + + IG E V G+ L+TPE+ Y KSR+GN + S +V L K + Sbjct: 98 EVYGPVLVEVNVPDQSHAKYLEGQLAWYTWKSFITQDPRDRDFLVNNL--QHYDVPVLNYTG-RDSQQREPSEISPEMRAIGIHFRLDQIFDAPDAVKEVLISQSKLDHSFIGSEETDQKAVE-VPNLGISSLWTPENHYYWSKSRYGN-HVSAIVEQLQRPKLLV 258
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: A0A0D3HN79_9ORYZ (Structural maintenance of chromosomes protein 5 n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3HN79_9ORYZ) HSP 1 Score: 77.0 bits (188), Expect = 2.250e-13 Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRV-SVMGVDSVRESVSQHPNVADHLMQKYRLTWLDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFIG 498 EVYGPVL+EVNI D+ H + P Y F+ Q SD L F++ + V + MG +R ++ N+ + Q + LD+ FEAPPAV L + A + +G T ++ V + G+ +TP + Y +SR+G + S +V + S+ F+G Sbjct: 115 EVYGPVLLEVNIQDKAHASYLEGHVPNYIWKPFITQDASDLDLLVRQFKKYDIPVLNYMGDKGIR---TEPFNITMEMQQVGIYSRLDQVFEAPPAVKDVLISQAKLDHSYVGTDE-TQNRADDVPKLGMSDFWTPNNHYRWSRSRYGG-HLSALVDDVNPSRYFMG 276
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: A0A0D3HN78_9ORYZ (Structural maintenance of chromosomes protein 5 n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3HN78_9ORYZ) HSP 1 Score: 77.0 bits (188), Expect = 2.410e-13 Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRV-SVMGVDSVRESVSQHPNVADHLMQKYRLTWLDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFIG 498 EVYGPVL+EVNI D+ H + P Y F+ Q SD L F++ + V + MG +R ++ N+ + Q + LD+ FEAPPAV L + A + +G T ++ V + G+ +TP + Y +SR+G + S +V + S+ F+G Sbjct: 453 EVYGPVLLEVNIQDKAHASYLEGHVPNYIWKPFITQDASDLDLLVRQFKKYDIPVLNYMGDKGIR---TEPFNITMEMQQVGIYSRLDQVFEAPPAVKDVLISQAKLDHSYVGTDE-TQNRADDVPKLGMSDFWTPNNHYRWSRSRYGG-HLSALVDDVNPSRYFMG 614
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: I0Z8T4_COCSC (Structural maintenance of chromosomes protein 5 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8T4_COCSC) HSP 1 Score: 77.0 bits (188), Expect = 2.450e-13 Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRVSVMGVDSVRESVSQHPNVADHLMQKYRLTW-LDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFIG 498 +VYGP+L+EV +ADQ H + Q P + FV D+ +L +R+ + ++ + QHP+ + +T LDE FEAPP + + L+ +S+ R +G T + A + LYTPES + R S + + RS V + ++G Sbjct: 465 DVYGPILLEVTVADQQHAKYLEQQLPGHIWTRFVTVYREDQDELRREAQRRKVHITTSNYTGSVTAPLQHPDGPASQYANFGITHTLDEVFEAPPVIKRILNDESSITRAYVGT-ARTDVDAFLRANATVTNLYTPESNHRIRVSLYNSAARSQQVKAIKQQCDWLG 630
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: A0A0Q3FYT1_BRADI (Structural maintenance of chromosomes protein 5 n=5 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3FYT1_BRADI) HSP 1 Score: 76.3 bits (186), Expect = 4.530e-13 Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRV-SVMGVDSVRESVSQHPNVADHLMQKYRLTWLDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFI 495 EVYGPVL+E+N+ ++ H + P Y FV Q SDR L ++ ++ V + G +S+ +S+ + + Q + LD+ F+APPAV L AS+ IG E VA+ G+ L+TP + Y KSR+G + S V P+ S+ F+ Sbjct: 462 EVYGPVLLEINVQNKTHASYLENHVPNYVWKSFVTQDASDRDLLVRQLKQYNIPVLNYTGDNSI---MSRPFEITPEMKQLGIKSRLDQEFDAPPAVKNVLITQASVDNSYIGTDQADKRADE-VADLGVLDLWTPSNHYRWSKSRYGG-HLSGSVDPVYPSRLFM 622
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: G7K5K8_MEDTR (Structural maintenance of chromosomes protein 5 n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7K5K8_MEDTR) HSP 1 Score: 75.5 bits (184), Expect = 8.380e-13 Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRVSVMGVDSVRESVSQHPNVADHLMQKYRLTW-LDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFI 495 EVYGPVL+EVN+ DQ H + Q Y+ F+ Q DR L + QH V V+ R+S + P+ M+ + + LD+ F+AP AV + L + + + IG E V G+ L+TPE+ Y KSR+GN + S +V L K + Sbjct: 454 EVYGPVLVEVNVPDQSHAKYLEGQLAWYTWKSFITQDPRDRDFLVNNL--QHYDVPVLNYTG-RDSQQREPSEISPEMRAIGIHFRLDQIFDAPDAVKEVLISQSKLDHSFIGSEETDQKAVE-VPNLGISSLWTPENHYYWSKSRYGN-HVSAIVEQLQRPKLLV 614
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: A0A6A6KZN3_HEVBR (Structural maintenance of chromosomes protein 5 n=4 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KZN3_HEVBR) HSP 1 Score: 75.5 bits (184), Expect = 8.420e-13 Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRVSVMGVDSVRESVS-QHPNVADHLMQKYRLTWLDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFGNQNRSTMVVPLAHSKTFI 495 EVYGPVL+EVN+ D+ H D + P Y F+ Q SDR L + + + ++ VR+ + P M + T LD+ F+A AV + L + + R IG + T ++ VA+ + +TPE+ Y SR+G + S +V P+ HS+ + Sbjct: 460 EVYGPVLLEVNVPDRVHADYLEGHVPYYIWKSFITQDPSDRDFLVRNLKSFDVPI----LNYVRDEYHPKEPFQVSEEMHELDYTRLDQVFDASDAVKEVLISQCGLERSYIGSKE-TDKKADDVAKLNILDFWTPENHYRWSSSRYGG-HLSAIVEPVNHSRLLL 619
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Match: A0A022QKL1_ERYGU (Structural maintenance of chromosomes protein 5 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QKL1_ERYGU) HSP 1 Score: 75.1 bits (183), Expect = 1.140e-12 Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 1 Query: 1 EVYGPVLMEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRVSVMGVDSVR----ESVSQHP-NVADHLMQKYRLTWLDETFEAPPAVMKALHANASMARPVIGDRGLTTTVSECVAETGLEQLYTPESKYTSRKSRFG 441 EVYGPVL+EVN+A+++H DC+ Y F+ Q DR L ++ GV + ES + P + D + + + LD+ FEAP AV + L + + R IG + T ++ V G+ ++TPE+ Y +SR+G Sbjct: 453 EVYGPVLLEVNVANRFHADCLEGHVANYIWKAFITQDREDRDLLVK-------KLGSFGVPVINHVPNESSGRDPFRITDEMRKLGISSRLDQVFEAPHAVKEVLIGQSGLDRSYIGSKE-TDEKADLVLRLGIMDVWTPENHYHWARSRYG 596 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106630.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig106630.1432.1 >prot_M-pyrifera_M_contig106630.1432.1 ID=prot_M-pyrifera_M_contig106630.1432.1|Name=mRNA_M-pyrifera_M_contig106630.1432.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp MEVNIADQYHRDCVSMQTPRYSQFGFVAQTESDRKKLCSTFERQHLRVSVback to top mRNA from alignment at M-pyrifera_M_contig106630:5..502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig106630.1432.1 ID=mRNA_M-pyrifera_M_contig106630.1432.1|Name=mRNA_M-pyrifera_M_contig106630.1432.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig106630:5..502+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig106630:5..502+ >mRNA_M-pyrifera_M_contig106630.1432.1 ID=mRNA_M-pyrifera_M_contig106630.1432.1|Name=mRNA_M-pyrifera_M_contig106630.1432.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig106630:5..502+ (Macrocystis pyrifera P11B4 male)back to top |