mRNA_M-pyrifera_M_contig106556.1420.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106556.1420.1
Unique NamemRNA_M-pyrifera_M_contig106556.1420.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106556.1420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106556contigM-pyrifera_M_contig106556:2..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.7116091-CDS-M-pyrifera_M_contig106556:1..2291622815575.7116091-CDS-M-pyrifera_M_contig106556:1..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106556 2..229 +
1692277470.912568-CDS-M-pyrifera_M_contig106556:1..2291692277470.912568-CDS-M-pyrifera_M_contig106556:1..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106556 2..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106556.1420.1prot_M-pyrifera_M_contig106556.1420.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106556 2..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106556.1420.1

>prot_M-pyrifera_M_contig106556.1420.1 ID=prot_M-pyrifera_M_contig106556.1420.1|Name=mRNA_M-pyrifera_M_contig106556.1420.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
VSVLGIPVINKNMDICTISPAVTCPIKKNPKWELDVVELIPSIVPAGTYD
ATANITDQHSNIVACASVKLKIVSA*
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mRNA from alignment at M-pyrifera_M_contig106556:2..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106556.1420.1 ID=mRNA_M-pyrifera_M_contig106556.1420.1|Name=mRNA_M-pyrifera_M_contig106556.1420.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig106556:2..229+ (Macrocystis pyrifera P11B4 male)
GTATCCGTCTTGGGAATCCCAGTCATCAACAAGAACATGGATATTTGCAC
CATCTCTCCTGCCGTTACGTGCCCTATCAAGAAGAACCCCAAGTGGGAGC
TTGATGTGGTCGAATTGATTCCATCGATCGTTCCTGCTGGCACCTATGAC
GCAACAGCAAATATTACCGACCAACACAGCAATATTGTTGCTTGTGCAAG
TGTGAAGCTCAAAATTGTGAGTGCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106556:2..229+

>mRNA_M-pyrifera_M_contig106556.1420.1 ID=mRNA_M-pyrifera_M_contig106556.1420.1|Name=mRNA_M-pyrifera_M_contig106556.1420.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig106556:2..229+ (Macrocystis pyrifera P11B4 male)
GTATCCGTCTTGGGAATCCCAGTCATCAACAAGAACATGGATATTTGCAC
CATCTCTCCTGCCGTTACGTGCCCTATCAAGAAGAACCCCAAGTGGGAGC
TTGATGTGGTCGAATTGATTCCATCGATCGTTCCTGCTGGCACCTATGAC
GCAACAGCAAATATTACCGACCAACACAGCAATATTGTTGCTTGTGCAAG
TGTGAAGCTCAAAATTGTGAGTGCTTAAGTATCCGTCTTGGGAATCCCAG
TCATCAACAAGAACATGGATATTTGCACCATCTCTCCTGCCGTTACGTGC
CCTATCAAGAAGAACCCCAAGTGGGAGCTTGATGTGGTCGAATTGATTCC
ATCGATCGTTCCTGCTGGCACCTATGACGCAACAGCAAATATTACCGACC
AACACAGCAATATTGTTGCTTGTGCAAGTGTGAAGCTCAAAATTGTGAGT
GCTTAA
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