mRNA_M-pyrifera_M_contig105569.1196.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105569.1196.1
Unique NamemRNA_M-pyrifera_M_contig105569.1196.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: A0A024GBD5_9STRA (Uncharacterized protein n=7 Tax=Albugo candida TaxID=65357 RepID=A0A024GBD5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.100e-8
Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 1
Query:   19 FHEERSLRSGKSRRSFWGATDLACSPHDATLLVTGVATGRLMAWNTEAVGRRRFAKTVA----------------GHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVRGR 303
            F E+R+LR+GKS  +F    D+   P    LL T    G ++ WN +  G +    T                  GH R V R+ +HP +   ++S S DGT++LWD RG+
Sbjct:   56 FSEKRNLRAGKSSLNF-STNDIRWHPQSNHLLATAATNGVVVIWNLQKDGYKHVQGTFCDRNRHCIDSVSERVLNGHRRAVNRICWHPTDWNLLVSGSQDGTIKLWDKRGK 165          
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: A0A0P4W776_SCYOL (GATOR complex protein WDR24 n=4 Tax=Portunidae TaxID=6757 RepID=A0A0P4W776_SCYOL)

HSP 1 Score: 60.8 bits (146), Expect = 1.480e-8
Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   25 EERSLRSGKSRRSFWGATDLACSPHDATLLVTGVATGRLMAWNTEAVGRRRFAKTVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVRGR 303
            E  +LR+GK     +   D+  +P +  +L T    G ++ WN     R +       HSR V +V+FHP E   ++S SLDG ++L+D+R R
Sbjct:   44 ERANLRAGKHLNLNFSCNDVVWNPLEDAVLATASTNGAVVTWNLNKASRSKLDCVFNDHSRTVQKVSFHPSEAHLLISGSLDGFMKLFDLRRR 136          
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: A0A8J4YPV0_CHIOP (GATOR complex protein WDR24 n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4YPV0_CHIOP)

HSP 1 Score: 60.1 bits (144), Expect = 2.780e-8
Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   19 FHEERSLRSGKSRRSFWGATDLACSPHDATLLVTGVATGRLMAWNTEAVGRRRFAKTVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVRGR 303
            F E  +LR+GK     +   D+  +P + ++L T    G ++ WN     R +       HSR V +V+FHP E   ++S SLDG ++L+D+R R
Sbjct:   43 FVERANLRAGKHLNLNFSCNDVVWNPVEDSVLATASTNGAVVTWNLNKSTRSKLDCVFNDHSRTVQKVSFHPTEAHLLISGSLDGFMKLFDLRRR 137          
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: A0A6A6U554_9PEZI (WD40 repeat-like protein n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6U554_9PEZI)

HSP 1 Score: 58.9 bits (141), Expect = 5.940e-8
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1
Query:  109 LLVTGVATGRLMAWNTEAVGRRRFAKTVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVRGR 303
            L+ TG A  +L  WN E   + +++  + GH + V RV F+P     + S SLDGTVR+WDVR +
Sbjct:   53 LVATGAANNKLRVWNPERA-QVKYSTDLRGHDKSVERVVFNPLREAELASCSLDGTVRIWDVRSK 116          
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: Q756Z9_ASHGO (Coronin n=1 Tax=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) TaxID=284811 RepID=Q756Z9_ASHGO)

HSP 1 Score: 50.4 bits (119), Expect = 6.530e-5
Identity = 32/88 (36.36%), Postives = 41/88 (46.59%), Query Frame = 1
Query:   79 DLACSPHDATLLVTGVATGRLMAW----------------NTEAVGRRRFAKTVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDV 294
            D    P D  +LV+G   GR+  W                N E V   +F   + GH R V  V +HP  +G + SSSLD TVRLW+V
Sbjct:   86 DTDFDPFDERMLVSGSDDGRIGVWEIPATYSFHNAQDEDGNVEHVAPVKF---LTGHQRKVGHVLYHPTAQGVLASSSLDHTVRLWNV 170          
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: UPI00193A6CD1 (uncharacterized protein LOC120327688 isoform X1 n=3 Tax=Styela clava TaxID=7725 RepID=UPI00193A6CD1)

HSP 1 Score: 50.4 bits (119), Expect = 6.880e-5
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 1
Query:  172 RRFAKTVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVRGRGKD 312
            ++  K+++GH R    VTFHPG    + + SL+G VR+WD+RG G +
Sbjct:   95 KKLVKSLSGHERSPWCVTFHPGSNEILATGSLNGEVRVWDLRGEGSE 141          
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: A0A2D4CCV7_PYTIN (FHA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCV7_PYTIN)

HSP 1 Score: 50.1 bits (118), Expect = 8.720e-5
Identity = 31/84 (36.90%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   82 LACSPH-DATLLVTGVATGRLMAWNTEAVGRRRFAK---------TVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVRGR 303
            L+ SP  D  L+ TG +  +++    E V    FAK            GH+  VT   +HP +R  V+SSSLDGTVR+WD+  +
Sbjct:  304 LSYSPSGDRLLVATGSSQPKIL--TREGVEELHFAKGDMYVVEMANTNGHTHTVTGAMWHPSQRETVISSSLDGTVRIWDLNAK 385          
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Match: A0A0A9AJQ6_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9AJQ6_ARUDO)

HSP 1 Score: 48.1 bits (113), Expect = 9.750e-5
Identity = 24/72 (33.33%), Postives = 34/72 (47.22%), Query Frame = 1
Query:   82 LACSPHDATLLVTGVATGRLMAWNTEAVGRRRFAKTVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVR 297
            L C    ++L+  G +   L  W+    G        + HS  +T   +HP    H+LSSS DG V LWD+R
Sbjct:   10 LDCGGEGSSLIAAGGSDPALRVWDPRKPGSLAPIFQFSSHSSWITACKWHPSSWFHLLSSSFDGKVMLWDLR 81          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105569.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A024GBD5_9STRA1.100e-832.43Uncharacterized protein n=7 Tax=Albugo candida Tax... [more]
A0A0P4W776_SCYOL1.480e-833.33GATOR complex protein WDR24 n=4 Tax=Portunidae Tax... [more]
A0A8J4YPV0_CHIOP2.780e-833.68GATOR complex protein WDR24 n=1 Tax=Chionoecetes o... [more]
A0A6A6U554_9PEZI5.940e-841.54WD40 repeat-like protein n=1 Tax=Microthyrium micr... [more]
Q756Z9_ASHGO6.530e-536.36Coronin n=1 Tax=Ashbya gossypii (strain ATCC 10895... [more]
UPI00193A6CD16.880e-542.55uncharacterized protein LOC120327688 isoform X1 n=... [more]
A0A2D4CCV7_PYTIN8.720e-536.90FHA domain-containing protein n=1 Tax=Pythium insi... [more]
A0A0A9AJQ6_ARUDO9.750e-533.33Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105569contigM-pyrifera_M_contig105569:253..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog115417.EPrPW00000015325
KEGG koko:K20408
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat
EggNOG OGs1MF7Z@121069,KOG0269@1,KOG0269@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.3530667-CDS-M-pyrifera_M_contig105569:252..5701622815564.3530667-CDS-M-pyrifera_M_contig105569:252..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105569 253..570 +
1692277465.9130733-CDS-M-pyrifera_M_contig105569:252..5701692277465.9130733-CDS-M-pyrifera_M_contig105569:252..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105569 253..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105569.1196.1prot_M-pyrifera_M_contig105569.1196.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105569 253..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105569.1196.1

>prot_M-pyrifera_M_contig105569.1196.1 ID=prot_M-pyrifera_M_contig105569.1196.1|Name=mRNA_M-pyrifera_M_contig105569.1196.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
SESRLEFHEERSLRSGKSRRSFWGATDLACSPHDATLLVTGVATGRLMAW
NTEAVGRRRFAKTVAGHSRHVTRVTFHPGERGHVLSSSLDGTVRLWDVRG
RGKDGM
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mRNA from alignment at M-pyrifera_M_contig105569:253..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105569.1196.1 ID=mRNA_M-pyrifera_M_contig105569.1196.1|Name=mRNA_M-pyrifera_M_contig105569.1196.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig105569:253..570+ (Macrocystis pyrifera P11B4 male)
TCTGAGTCGCGTTTGGAGTTCCACGAAGAGCGCAGTCTTCGTAGTGGCAA GTCGCGTCGGTCTTTCTGGGGTGCGACTGACCTTGCGTGCTCTCCGCACG ACGCCACGCTGCTGGTGACGGGCGTGGCGACGGGTCGTCTGATGGCGTGG AACACAGAGGCCGTGGGGCGTCGCCGGTTCGCCAAGACGGTGGCTGGCCA TTCTCGGCACGTGACGCGCGTCACGTTTCACCCGGGGGAGCGGGGCCACG TGCTGTCGAGCTCGTTGGACGGCACGGTGCGGCTGTGGGATGTGCGAGGT CGTGGGAAGGACGGGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105569:253..570+

>mRNA_M-pyrifera_M_contig105569.1196.1 ID=mRNA_M-pyrifera_M_contig105569.1196.1|Name=mRNA_M-pyrifera_M_contig105569.1196.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig105569:253..570+ (Macrocystis pyrifera P11B4 male)
TCTGAGTCGCGTTTGGAGTTCCACGAAGAGCGCAGTCTTCGTAGTGGCAA
GTCGCGTCGGTCTTTCTGGGGTGCGACTGACCTTGCGTGCTCTCCGCACG
ACGCCACGCTGCTGGTGACGGGCGTGGCGACGGGTCGTCTGATGGCGTGG
AACACAGAGGCCGTGGGGCGTCGCCGGTTCGCCAAGACGGTGGCTGGCCA
TTCTCGGCACGTGACGCGCGTCACGTTTCACCCGGGGGAGCGGGGCCACG
TGCTGTCGAGCTCGTTGGACGGCACGGTGCGGCTGTGGGATGTGCGAGGT
CGTGGGAAGGACGGGATGTCTGAGTCGCGTTTGGAGTTCCACGAAGAGCG
CAGTCTTCGTAGTGGCAAGTCGCGTCGGTCTTTCTGGGGTGCGACTGACC
TTGCGTGCTCTCCGCACGACGCCACGCTGCTGGTGACGGGCGTGGCGACG
GGTCGTCTGATGGCGTGGAACACAGAGGCCGTGGGGCGTCGCCGGTTCGC
CAAGACGGTGGCTGGCCATTCTCGGCACGTGACGCGCGTCACGTTTCACC
CGGGGGAGCGGGGCCACGTGCTGTCGAGCTCGTTGGACGGCACGGTGCGG
CTGTGGGATGTGCGAGGTCGTGGGAAGGACGGGATG
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