mRNA_M-pyrifera_M_contig105548.1191.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105548.1191.1
Unique NamemRNA_M-pyrifera_M_contig105548.1191.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: A0A518E383_9BACT (Yop-YscD_cpl domain-containing protein n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518E383_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 5.110e-17
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   10 LFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEFLVRIGTQKNKR 249
            +++IG+A DCDLVL D +FP+VH YL L    + +R LG  P   VNG  V    L D D +RTGPYEF V IG Q   R
Sbjct:   45 VYLIGSASDCDLVLADPQFPDVHVYLYLKPDEVTMRVLGEGPVAAVNGEPVLTARLHDGDHLRTGPYEFCVHIGAQPGPR 124          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: UPI001CCF5F79 (FHA domain-containing protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCF5F79)

HSP 1 Score: 79.0 bits (193), Expect = 1.030e-16
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 SPLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEF 216
            SP+F +G+  DCDLVLGDD+FPE+ AY+L  H    LR L  +P +TVN   V    L + DRIR GPYEF
Sbjct:   19 SPVFTLGSGHDCDLVLGDDQFPELFAYILRTHDGYRLRCLADEPVLTVNAEDVVATRLENGDRIRCGPYEF 89          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: A0A2G2L3M7_9BACT (Yop-YscD_cpl domain-containing protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2L3M7_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 3.530e-16
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    4 SPLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEFLVRIGTQKN 243
            +P+F+IG+A DCDLVLGD +FPE + Y+ + H  + LR +   P+++VNG  ++   L D D IR GP+EF + IG + +
Sbjct:   82 APVFVIGSATDCDLVLGDPQFPECYTYIYVQHSAVSLRKMPGGPDLSVNGVVLEQTLLHDGDWIRCGPFEFRISIGVKNS 161          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: A0A2S8FAH2_9BACT (Yop-YscD_cpl domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8FAH2_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 5.890e-16
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    7 PLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEF 216
            P+F +G+A DCDLVLGD++FPE++AY+L  H    LR L  +P +TVN   +    L D DRIR GPYEF
Sbjct:   56 PVFTLGSAGDCDLVLGDEQFPELYAYILRTHDGYRLRCLVAEPILTVNAEDMVIKQLEDGDRIRCGPYEF 125          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: A0A2S8FS70_9BACT (Yop-YscD_cpl domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8FS70_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 6.490e-16
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 SPLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEF 216
            S +FM+G++ +CDLVLGDD+FPE++AY+L   G   LR L  +P +TVN        L D DRIR GPYEF
Sbjct:   41 SSVFMLGSSDECDLVLGDDQFPELYAYILRTDGGYQLRCLAAEPVLTVNAEDALLSHLEDGDRIRCGPYEF 111          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: A0A2S8GE42_9BACT (Yop-YscD_cpl domain-containing protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GE42_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.570e-15
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 SPLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEF 216
            S +FM+G++ +CDLVLGD++FPE++AYLL       LR L ++P +TVN        L D DRIR GPYEF
Sbjct:   41 SSVFMLGSSSECDLVLGDEQFPELYAYLLRTDEGYQLRCLAVEPVLTVNSEDTLVARLEDGDRIRCGPYEF 111          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: A0A518C5P4_9BACT (Yop-YscD_cpl domain-containing protein n=2 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C5P4_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 3.270e-15
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    7 PLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEF 216
            P+F +G+A DCDL+LGD +FPE++AY+L  H    LR L  +P +TVN        L + DRIR GPYEF
Sbjct:   56 PVFTLGSASDCDLILGDQQFPELYAYILRTHDGYRLRCLTAEPILTVNAEDTVVAQLENGDRIRCGPYEF 125          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: UPI00199500E4 (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI00199500E4)

HSP 1 Score: 72.0 bits (175), Expect = 1.240e-13
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    7 PLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEFLVRI 228
            P+F+IG A DCDLVLGD RFPE +AYL +    + +R LG  PE+ VNG   +   L D D +  G YEF + I
Sbjct:   51 PVFLIGAAEDCDLVLGDVRFPEAYAYLYVTVRGVSVRHLGDGPELNVNGELTESALLTDGDILELGAYEFQLHI 124          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: A0A368KMP0_9BACT (Yop-YscD_cpl domain-containing protein n=1 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KMP0_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 2.220e-13
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 SPLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEF 216
            S ++M+G+  +CDLVLGDD+FPE++AY+L  +    +R L  +P +TVN        L + DRIR GPYEF
Sbjct:   41 SSVYMLGSGSECDLVLGDDQFPELYAYILRTNEGYQIRCLDAEPVLTVNAEDTLLCRLNNGDRIRCGPYEF 111          
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Match: D2R5X6_PIRSD (Yop-YscD_cpl domain-containing protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2R5X6_PIRSD)

HSP 1 Score: 71.2 bits (173), Expect = 2.840e-13
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 SPLFMIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVDHVSLRDMDRIRTGPYEF-LVRIGTQK 240
            SP+F+IG+A DCDLVLGD  FP+ +AYL L    + +R+LG  P++ VN   V+   L   DR+  G +EF L  I T K
Sbjct:   49 SPVFLIGSASDCDLVLGDKSFPDAYAYLYLNASGISIRYLGEGPQLLVNDQPVEGSPLAVGDRLEMGIFEFRLAEIHTSK 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105548.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A518E383_9BACT5.110e-1750.00Yop-YscD_cpl domain-containing protein n=1 Tax=Lig... [more]
UPI001CCF5F791.030e-1653.52FHA domain-containing protein n=1 Tax=Bremerella v... [more]
A0A2G2L3M7_9BACT3.530e-1643.75Yop-YscD_cpl domain-containing protein n=1 Tax=Bla... [more]
A0A2S8FAH2_9BACT5.890e-1652.86Yop-YscD_cpl domain-containing protein n=2 Tax=Pir... [more]
A0A2S8FS70_9BACT6.490e-1652.11Yop-YscD_cpl domain-containing protein n=2 Tax=Pir... [more]
A0A2S8GE42_9BACT2.570e-1550.70Yop-YscD_cpl domain-containing protein n=1 Tax=Bla... [more]
A0A518C5P4_9BACT3.270e-1550.00Yop-YscD_cpl domain-containing protein n=2 Tax=Bre... [more]
UPI00199500E41.240e-1348.65Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A368KMP0_9BACT2.220e-1346.48Yop-YscD_cpl domain-containing protein n=1 Tax=Bla... [more]
D2R5X6_PIRSD2.840e-1346.25Yop-YscD_cpl domain-containing protein n=1 Tax=Pir... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105548contigM-pyrifera_M_contig105548:2..253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.1
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog314230.DSM3645_20052
Hectar predicted targeting categoryother localisation
EggNOG OGs2EPV5@1,2J1F6@203682,33HFM@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size237
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.1045995-UTR-M-pyrifera_M_contig105548:1..161622815564.1045995-UTR-M-pyrifera_M_contig105548:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105548 2..16 +
1692277465.8211663-UTR-M-pyrifera_M_contig105548:1..161692277465.8211663-UTR-M-pyrifera_M_contig105548:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105548 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.1207204-CDS-M-pyrifera_M_contig105548:16..2531622815564.1207204-CDS-M-pyrifera_M_contig105548:16..253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105548 17..253 +
1692277465.8351142-CDS-M-pyrifera_M_contig105548:16..2531692277465.8351142-CDS-M-pyrifera_M_contig105548:16..253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105548 17..253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105548.1191.1prot_M-pyrifera_M_contig105548.1191.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105548 17..253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105548.1191.1

>prot_M-pyrifera_M_contig105548.1191.1 ID=prot_M-pyrifera_M_contig105548.1191.1|Name=mRNA_M-pyrifera_M_contig105548.1191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MIGTAPDCDLVLGDDRFPEVHAYLLLGHGPLLLRWLGIDPEITVNGAQVD
HVSLRDMDRIRTGPYEFLVRIGTQKNKRT
back to top

mRNA from alignment at M-pyrifera_M_contig105548:2..253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105548.1191.1 ID=mRNA_M-pyrifera_M_contig105548.1191.1|Name=mRNA_M-pyrifera_M_contig105548.1191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig105548:2..253+ (Macrocystis pyrifera P11B4 male)
GCTTCCCCGTTGTTCATGATCGGGACGGCGCCCGATTGCGATCTTGTATT GGGCGACGATCGCTTCCCAGAAGTGCACGCCTACTTGCTACTTGGGCACG GCCCCCTTCTGTTGCGGTGGCTGGGGATCGATCCGGAAATCACGGTCAAC GGCGCCCAAGTCGACCACGTGAGCCTGCGAGACATGGACCGCATCCGCAC GGGCCCCTACGAATTTCTGGTACGGATTGGTACGCAAAAAAACAAGCGAA CG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105548:2..253+

>mRNA_M-pyrifera_M_contig105548.1191.1 ID=mRNA_M-pyrifera_M_contig105548.1191.1|Name=mRNA_M-pyrifera_M_contig105548.1191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig105548:2..253+ (Macrocystis pyrifera P11B4 male)
ATGATCGGGACGGCGCCCGATTGCGATCTTGTATTGGGCGACGATCGCTT
CCCAGAAGTGCACGCCTACTTGCTACTTGGGCACGGCCCCCTTCTGTTGC
GGTGGCTGGGGATCGATCCGGAAATCACGGTCAACGGCGCCCAAGTCGAC
CACGTGAGCCTGCGAGACATGGACCGCATCCGCACGGGCCCCTACGAATT
TCTGGTACGGATTGGTACGCAAAAAAACAAGCGAACGATGATCGGGACGG
CGCCCGATTGCGATCTTGTATTGGGCGACGATCGCTTCCCAGAAGTGCAC
GCCTACTTGCTACTTGGGCACGGCCCCCTTCTGTTGCGGTGGCTGGGGAT
CGATCCGGAAATCACGGTCAACGGCGCCCAAGTCGACCACGTGAGCCTGC
GAGACATGGACCGCATCCGCACGGGCCCCTACGAATTTCTGGTACGGATT
GGTACGCAAAAAAACAAGCGAACG
back to top