mRNA_M-pyrifera_M_contig105475.1173.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105475.1173.1
Unique NamemRNA_M-pyrifera_M_contig105475.1173.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Match: A0A2R5GV26_9STRA (Transmembrane protein 180 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GV26_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.170e-24
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   19 GLIVSASFFLPHVGTVLLTPAIRARGLYAVLRSVFRFRLALLGVGGLAALWGYMNGQGIVPAAAVAAAFMLANRTVSELVCRLSPLILADLVDEDRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVL 414
            G I+SASF LP VG ++LTPA++  G+YAV++ +   RLA  GV  L        G G   +   AA F+L+NR +SE +CR+ PLI++DLVDEDR LH+R   ++A+IVG++AF  K SQS AP +GF  L
Sbjct:  337 GAIISASFVLPWVGMLVLTPAVQRNGVYAVVQGILAARLAWCGVSALL-------GPG-ARSPHFAAWFLLSNRVMSEAICRICPLIISDLVDEDRYLHKRRESVSATIVGASAFMGKVSQSLAPMLGFHAL 460          
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Match: A0A7S1HG37_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HG37_HEMAN)

HSP 1 Score: 82.4 bits (202), Expect = 1.800e-15
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   16 RGLIVSASFFLPHVGTVLLTPAIRARGLYAVLRSVFRFRLALLGVGGLAALWGYMNGQGIVPAAAVAAAFMLANRTVSELVCRLSPLILADLVDEDRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVLGTYGGE 432
            R LI+S SF LP + T+LL PA+   G+ +V+ + F  ++ LLGV  LA   G      I        AF +  R  +E VCRL PL+L+DLVDED+VLH R R ++A  +G+ +F +K  +S AP +G+ ++ + GG+
Sbjct:  317 RSLIISTSFVLPWIVTILLAPAVSRFGVRSVIIASFCLKV-LLGVIALAV--GLKRPLFI-------GAFAVMTRVFTECVCRLGPLVLSDLVDEDKVLHSRARTMSAMFIGTNSFFTKPGESLAPMLGWAIVNSGGGQ 445          
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Match: A0A0L0DG70_THETB (Transmembrane protein 180 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DG70_THETB)

HSP 1 Score: 80.1 bits (196), Expect = 1.240e-14
Identity = 53/138 (38.41%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    1 LSAWLRGLIVSASFFLPHVGTVLLTPAIRARGLYAVLRSVFRFRLALLGVGGLAALWGYMNGQGIVPAAAVAAAFMLANRTVSELVCRLSPLILADLVDEDRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVL 414
            +SA  R ++V+AS+ LPHV T++    +   G Y V+R++FR R+ L     LA     + G     AA    +F++ NR V+E  CRL  + LAD+VDE+  + +R   L+A I G+ AF +K +QS APA+G++ L
Sbjct:  258 VSASARAMLVTASYVLPHVFTIVSGALVARHGAYLVIRALFRARVGLGVAAWLAVALPALGGT--TTAAVCLGSFVVLNRLVTEGTCRLMNVALADVVDEEAAVAKRATPLSALIFGTNAFVTKPAQSLAPALGWYFL 393          
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Match: A0A7S0F397_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F397_9CRYP)

HSP 1 Score: 78.6 bits (192), Expect = 3.820e-14
Identity = 50/138 (36.23%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    1 LSAWLRGLIVSASFFLPHVGTVLLTPAIRARGLYAVLRSVFRFRLALLGVGGLAALWGYMNGQGIVPAAAVAAAFMLANRTVSELVCRLSPLILADLVDEDRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVL 414
            LS   R LI+S SF LP + T+L+ P +   G++ +L+  F  +L L  +   A   GY +   I         F +A R ++E VCR SP++LADL DED+ LH R++ ++A+++G+ A  +K  +S AP +G+ +L
Sbjct:  211 LSRKTRSLIISTSFILPWLTTILVGPFVNKHGVHRLLQIAFSLKLTLSMI---ALCVGYKHQIFI-------GLFAVATRVLTECVCRQSPMVLADLADEDKYLHIRDKSMSATVMGTNALFTKPGESLAPMLGWAIL 338          
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Match: A0A7S3CYF3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CYF3_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 6.730e-12
Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   16 RGLIVSASFFLPHVGTVLLTPAIRARGLYAVLRSVFRFRLALLGVGGLAALWGYMNGQGIVPAAA----------------------------VAAAFMLANRTVSELVCRLSPLILADLVDEDRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVL 414
            R L+V+ SF +PH+ T+L  P  + +G+YAV+R+        +    L+ ++ Y+    I P AA                              A F+L+ R ++E  CRLSPL+L+D+VDEDRV ++R   + A+I+GS++F  K + S AP +G+ ++
Sbjct:  405 RSLVVALSFAMPHLSTILTEPIQKRKGVYAVVRA------QTIAKAFLSVVFAYLLSAYIFPPAADSSSXXXXXXXXXXXXXPPLMRSASFGYAVAFFLLSARIMTESNCRLSPLLLSDIVDEDRVKNKRKISMGAAIIGSSSFLVKPAVSIAPMLGWALI 559          
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Match: L1JD68_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JD68_GUITC)

HSP 1 Score: 57.8 bits (138), Expect = 7.430e-7
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 LSAWLRGLIVSASFFLPHVGTVLLTPAIRARGLYAVLRSVFRFRLALLGVGGLAALWGYMNGQGIVPAAAVAAAFMLANRTVSELVCRLSPLILADLVDEDRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVL 414
            LS   R LI+S SF LP + T+L+ P +   G+Y +L+  F  +L L  V   A   GY +   I         F +A R ++E VCR           +D+ LH R+R ++A+++G+ A  +K  +S AP +G+ +L
Sbjct:  263 LSRKTRSLIISTSFILPWLTTILVGPFVNKHGVYRLLQIAFTLKLMLSMV---ALCIGYKHQVFI-------GLFAVATRVLTECVCR-----------QDKYLHIRDRSMSATVMGTNALFTKPGESLAPMLGWAIL 379          
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Match: A0A7S4CDP4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CDP4_9EUGL)

HSP 1 Score: 55.5 bits (132), Expect = 8.180e-7
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  232 ANRTVSELVCRLSPLILADLVDEDRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVL 414
            ANR +SE VCR+ PL++ADL+DED  LH R   +++   G  A  +K  QS AP  G++VL
Sbjct:    1 ANRILSECVCRMIPLVIADLIDEDYALHNRKVTMSSMYFGCHALFTKPGQSLAPMFGWWVL 61          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105475.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2R5GV26_9STRA1.170e-2448.48Transmembrane protein 180 n=1 Tax=Hondaea fermenta... [more]
A0A7S1HG37_HEMAN1.800e-1540.29Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0L0DG70_THETB1.240e-1438.41Transmembrane protein 180 n=1 Tax=Thecamonas trahe... [more]
A0A7S0F397_9CRYP3.820e-1436.23Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3CYF3_9EUKA6.730e-1231.68Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
L1JD68_GUITC7.430e-732.61Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4CDP4_9EUGL8.180e-747.54Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105475contigM-pyrifera_M_contig105475:5..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1e-12
Seed eggNOG ortholog529818.AMSG_06531T0
Preferred nameTMEM180
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.MFS/sugar transport protein
EggNOG OGs2CMZ7@1,2QSW5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.9527974-CDS-M-pyrifera_M_contig105475:4..4691622815562.9527974-CDS-M-pyrifera_M_contig105475:4..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105475 5..469 +
1692277465.4079707-CDS-M-pyrifera_M_contig105475:4..4691692277465.4079707-CDS-M-pyrifera_M_contig105475:4..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105475 5..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105475.1173.1prot_M-pyrifera_M_contig105475.1173.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105475 5..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105475.1173.1

>prot_M-pyrifera_M_contig105475.1173.1 ID=prot_M-pyrifera_M_contig105475.1173.1|Name=mRNA_M-pyrifera_M_contig105475.1173.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
LSAWLRGLIVSASFFLPHVGTVLLTPAIRARGLYAVLRSVFRFRLALLGV
GGLAALWGYMNGQGIVPAAAVAAAFMLANRTVSELVCRLSPLILADLVDE
DRVLHRRNRGLAASIVGSAAFASKFSQSAAPAMGFFVLGTYGGENGLANA
LQHQR
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mRNA from alignment at M-pyrifera_M_contig105475:5..469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105475.1173.1 ID=mRNA_M-pyrifera_M_contig105475.1173.1|Name=mRNA_M-pyrifera_M_contig105475.1173.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig105475:5..469+ (Macrocystis pyrifera P11B4 male)
TTGAGTGCTTGGCTGCGTGGTCTGATCGTTTCGGCGTCTTTTTTTCTTCC GCACGTGGGCACGGTGCTGCTCACGCCGGCGATCCGGGCGCGAGGGCTGT ACGCGGTGCTGCGGAGCGTGTTCCGGTTCCGGCTGGCTCTCTTGGGAGTC GGGGGATTGGCGGCGCTGTGGGGCTACATGAACGGCCAGGGCATCGTCCC GGCAGCTGCAGTGGCTGCCGCCTTCATGCTCGCGAACCGGACTGTGTCCG AGCTCGTGTGCCGCCTCAGCCCCCTCATCCTCGCAGACCTGGTGGACGAA GACAGAGTGCTGCATCGACGCAACAGAGGCCTCGCCGCCAGCATCGTGGG CAGCGCCGCCTTTGCCTCAAAATTCTCCCAATCTGCGGCTCCCGCCATGG GCTTCTTCGTCCTCGGCACCTACGGCGGAGAAAACGGTCTCGCGAACGCA TTGCAGCACCAAAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105475:5..469+

>mRNA_M-pyrifera_M_contig105475.1173.1 ID=mRNA_M-pyrifera_M_contig105475.1173.1|Name=mRNA_M-pyrifera_M_contig105475.1173.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig105475:5..469+ (Macrocystis pyrifera P11B4 male)
TTGAGTGCTTGGCTGCGTGGTCTGATCGTTTCGGCGTCTTTTTTTCTTCC
GCACGTGGGCACGGTGCTGCTCACGCCGGCGATCCGGGCGCGAGGGCTGT
ACGCGGTGCTGCGGAGCGTGTTCCGGTTCCGGCTGGCTCTCTTGGGAGTC
GGGGGATTGGCGGCGCTGTGGGGCTACATGAACGGCCAGGGCATCGTCCC
GGCAGCTGCAGTGGCTGCCGCCTTCATGCTCGCGAACCGGACTGTGTCCG
AGCTCGTGTGCCGCCTCAGCCCCCTCATCCTCGCAGACCTGGTGGACGAA
GACAGAGTGCTGCATCGACGCAACAGAGGCCTCGCCGCCAGCATCGTGGG
CAGCGCCGCCTTTGCCTCAAAATTCTCCCAATCTGCGGCTCCCGCCATGG
GCTTCTTCGTCCTCGGCACCTACGGCGGAGAAAACGGTCTCGCGAACGCA
TTGCAGCACCAAAGATTGAGTGCTTGGCTGCGTGGTCTGATCGTTTCGGC
GTCTTTTTTTCTTCCGCACGTGGGCACGGTGCTGCTCACGCCGGCGATCC
GGGCGCGAGGGCTGTACGCGGTGCTGCGGAGCGTGTTCCGGTTCCGGCTG
GCTCTCTTGGGAGTCGGGGGATTGGCGGCGCTGTGGGGCTACATGAACGG
CCAGGGCATCGTCCCGGCAGCTGCAGTGGCTGCCGCCTTCATGCTCGCGA
ACCGGACTGTGTCCGAGCTCGTGTGCCGCCTCAGCCCCCTCATCCTCGCA
GACCTGGTGGACGAAGACAGAGTGCTGCATCGACGCAACAGAGGCCTCGC
CGCCAGCATCGTGGGCAGCGCCGCCTTTGCCTCAAAATTCTCCCAATCTG
CGGCTCCCGCCATGGGCTTCTTCGTCCTCGGCACCTACGGCGGAGAAAAC
GGTCTCGCGAACGCATTGCAGCACCAAAGA
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