mRNA_M-pyrifera_M_contig105416.1156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105416.1156.1
Unique NamemRNA_M-pyrifera_M_contig105416.1156.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: B7S2V1_9GAMM (DNA-directed RNA polymerase subunit alpha n=30 Tax=Proteobacteria TaxID=1224 RepID=B7S2V1_9GAMM)

HSP 1 Score: 357 bits (917), Expect = 5.910e-122
Identity = 184/211 (87.20%), Postives = 194/211 (91.94%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLS+KG G VTA DIQVDHDIEIRNPDHVICHLNG+S+I+MKLTVARGRGYSPADSRENPEEETR+IGRL LDATF+P++RV+YVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLES         EDE DP LLRP DD
Sbjct:   48 LSSMPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSKKGSGAVTAADIQVDHDIEIRNPDHVICHLNGASEINMKLTVARGRGYSPADSRENPEEETRSIGRLQLDATFAPVHRVSYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESXXXXXXXXXEDEVDPILLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2E7IT38_9GAMM (DNA-directed RNA polymerase subunit alpha n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7IT38_9GAMM)

HSP 1 Score: 345 bits (884), Expect = 5.920e-117
Identity = 175/211 (82.94%), Postives = 193/211 (91.47%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCA+TEVEIDGV+HEYSA+EGVQEDVIE+LLNLKGVA+VMNGK++A L LS+KGPGVVTAGDIQVDHDIEI+NP+HVI  LN + +++M+LTV RGRGY PAD+RE  EEETR+IGRL LDATFSPINRVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE  SEP  EEDE DP LLRP DD
Sbjct:   48 LSSMPGCAVTEVEIDGVQHEYSAMEGVQEDVIEVLLNLKGVAVVMNGKDQAVLNLSKKGPGVVTAGDIQVDHDIEIKNPEHVIATLNEAGELNMRLTVGRGRGYVPADAREAGEEETRSIGRLSLDATFSPINRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGDSEPAREEDEVDPILLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A095XTG2_9GAMM (DNA-directed RNA polymerase subunit alpha n=3 Tax=Halieaceae TaxID=1706372 RepID=A0A095XTG2_9GAMM)

HSP 1 Score: 345 bits (884), Expect = 6.130e-117
Identity = 174/211 (82.46%), Postives = 190/211 (90.05%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAITEVEIDGV HEYS IEG+QEDVIEILLNLK VALVM GK+E ELTL+++GPG VTAGDIQ DHD+EIRNP+HVICH+N    +SMK+T ARGRGYSPADSRE+PEEETR+IGRL LDATF+P++RVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE+ SE    EDE DP LLRP DD
Sbjct:   48 LSSMPGCAITEVEIDGVLHEYSTIEGIQEDVIEILLNLKEVALVMAGKDEVELTLTKEGPGAVTAGDIQTDHDVEIRNPEHVICHINDKKALSMKVTAARGRGYSPADSREDPEEETRSIGRLQLDATFTPVHRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEAHSESADSEDEVDPILLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2G6DZS5_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6DZS5_9GAMM)

HSP 1 Score: 342 bits (877), Expect = 7.090e-116
Identity = 172/211 (81.52%), Postives = 193/211 (91.47%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAITEV+IDGV HEYSAIEGVQEDVIEILLNLKGVALV+NGK+EAEL +++ G GVVTAGDIQ+DHD+E+RNP+HVICHLNG S I+++L V RGRGYSPADSR + EEETR+IGRL LDATFSP+ RV+YVVEAARVEQRTDLDKL+LDL+TNGTIDPEEAIRRAATILQQQLAVFVDLESE ++E V EEDE DP LLRP DD
Sbjct:   48 LSSMPGCAITEVQIDGVLHEYSAIEGVQEDVIEILLNLKGVALVLNGKDEAELVINKTGAGVVTAGDIQLDHDVEVRNPEHVICHLNGDSSIAIRLKVMRGRGYSPADSRIDAEEETRSIGRLQLDATFSPVYRVSYVVEAARVEQRTDLDKLILDLQTNGTIDPEEAIRRAATILQQQLAVFVDLESEKEAETVEEEDEVDPILLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: F3KYC8_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Halieaceae TaxID=1706372 RepID=F3KYC8_9GAMM)

HSP 1 Score: 340 bits (872), Expect = 4.080e-115
Identity = 173/211 (81.99%), Postives = 191/211 (90.52%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAITEV+IDGV HEYS IEGVQEDVIEILLNLK VA+V+NGK+EAELTLS+K PG VTAGDI +DHD+EI NPDHVIC++ G S +++KL V+RGRGYSPADSR N E+ETRAIGRL LDATFSPI RVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE ++E V+EEDE DP LLRP DD
Sbjct:   48 LSSMPGCAITEVQIDGVLHEYSTIEGVQEDVIEILLNLKDVAVVLNGKDEAELTLSKKEPGPVTAGDITLDHDVEICNPDHVICNVTGGSGVNLKLVVSRGRGYSPADSRGNEEDETRAIGRLQLDATFSPIRRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGEAEAVVEEDEVDPILLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A4A660_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A4A660_9GAMM)

HSP 1 Score: 333 bits (853), Expect = 3.140e-112
Identity = 171/211 (81.04%), Postives = 186/211 (88.15%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVAL+MNGK+EAEL LS++G G VTA DIQ DHDIEI NP+H+IC LN  S + MKLT+ARGRGYSPAD+RENPEEETR+IGRL LDATFSP+ RV+YVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATIL  QL VFVDL+SE+Q+     EDE DP LLRP DD
Sbjct:   48 LSSMPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALIMNGKDEAELVLSKEGEGPVTAADIQTDHDIEICNPEHLICTLNSKSAVHMKLTIARGRGYSPADARENPEEETRSIGRLQLDATFSPVMRVSYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILNDQLRVFVDLQSETQAVTSDAEDEVDPVLLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2E2XEG8_9GAMM (DNA-directed RNA polymerase subunit alpha n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E2XEG8_9GAMM)

HSP 1 Score: 332 bits (850), Expect = 8.390e-112
Identity = 165/211 (78.20%), Postives = 191/211 (90.52%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCA+TEVEIDGV HEYSAIEGVQEDV EILLNLKGVA+VM+GK++A LTLS+KGPGVVTAGDIQVDH++EI+NP+HVI ++ G  D++MKLTVARGRGY PAD+R + EEETRAIGRL LDA++SP+ R+AY VE+ARVEQRTDLDKL+LDLETNGTIDPEEAIRRAATILQQQLAVFVDLE E ++EP  +E+E DP LLRP DD
Sbjct:   48 LSSMPGCAVTEVEIDGVLHEYSAIEGVQEDVXEILLNLKGVAVVMHGKDQAVLTLSKKGPGVVTAGDIQVDHEVEIKNPEHVIANITGDVDLNMKLTVARGRGYQPADARRSDEEETRAIGRLQLDASYSPVKRLAYQVESARVEQRTDLDKLILDLETNGTIDPEEAIRRAATILQQQLAVFVDLEGEKEAEPEEKEEEIDPVLLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: B8KWI7_9GAMM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Luminiphilus syltensis NOR5-1B TaxID=565045 RepID=B8KWI7_9GAMM)

HSP 1 Score: 330 bits (847), Expect = 2.560e-111
Identity = 166/211 (78.67%), Postives = 187/211 (88.63%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVAL M GK+EAEL+L  KGP  VTAGDIQVDHD+E+ NPDHVIC L    +++++L   RGRGYSPADSRE+PE+ETR+IGRLHLDA+FSPI R++YVVE+ARVEQRTDLDKLV+DLETNGTIDPEEAIRRAATILQQQL+VFVDLESE+Q+    +EDE DP LLRP DD
Sbjct:   48 LSSMPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALTMAGKDEAELSLVAKGPCTVTAGDIQVDHDVEVSNPDHVICTLTSDQELAVRLVAQRGRGYSPADSREDPEDETRSIGRLHLDASFSPIRRISYVVESARVEQRTDLDKLVIDLETNGTIDPEEAIRRAATILQQQLSVFVDLESEAQTTATEQEDEVDPILLRPVDD 258
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BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: UPI00036B387C (DNA-directed RNA polymerase subunit alpha n=1 Tax=Dasania marina TaxID=471499 RepID=UPI00036B387C)

HSP 1 Score: 330 bits (846), Expect = 3.630e-111
Identity = 167/211 (79.15%), Postives = 188/211 (89.10%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAI E EIDGV HEYSAIEGV+EDVIEILLNLKGV++VMNGK+EA L+LS+KGPGVVTA DIQVDHDIEI+NP HVI HLN S +I+MKLTV RGRGY P  +R+  ++ETR IGRL LDA++SP++RVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQL+VFVDLESE + EPV EED+ DP LLRP DD
Sbjct:   48 LSSMPGCAIIEAEIDGVLHEYSAIEGVKEDVIEILLNLKGVSIVMNGKDEAVLSLSKKGPGVVTAADIQVDHDIEIKNPGHVIAHLNDSGEINMKLTVGRGRGYVPVGARQTEDDETRTIGRLQLDASYSPVHRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLSVFVDLESEKEVEPVEEEDQVDPILLRPVDD 258
[Close]
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: I2JLX6_9GAMM (DNA-directed RNA polymerase subunit alpha n=11 Tax=Spongiibacteraceae TaxID=1706375 RepID=I2JLX6_9GAMM)

HSP 1 Score: 327 bits (838), Expect = 5.770e-110
Identity = 166/211 (78.67%), Postives = 192/211 (91.00%), Query Frame = 1 
Query:    1 LSSMPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 633
            LSSMPGCAITEVEIDGV HEYSA+EGVQEDVIEILLNLK VA++M+GK++A L+L++KGPGVVTAGDIQ DH+IEI N DHVI +LN   +I+M+LT+ARGRGY PAD+R+N EEETR+IGRL LDA++SPI+RV+YVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE ++EP  EE+E DP LLRP DD
Sbjct:   48 LSSMPGCAITEVEIDGVLHEYSAMEGVQEDVIEILLNLKEVAVIMHGKDQAILSLNKKGPGVVTAGDIQTDHEIEIVNTDHVIANLNDDGEINMRLTIARGRGYVPADARDNGEEETRSIGRLQLDASYSPISRVSYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGENEPSREENEVDPILLRPVDD 258
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7S2V1_9GAMM5.910e-12287.20DNA-directed RNA polymerase subunit alpha n=30 Tax... [more]
A0A2E7IT38_9GAMM5.920e-11782.94DNA-directed RNA polymerase subunit alpha n=3 Tax=... [more]
A0A095XTG2_9GAMM6.130e-11782.46DNA-directed RNA polymerase subunit alpha n=3 Tax=... [more]
A0A2G6DZS5_9GAMM7.090e-11681.52DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
F3KYC8_9GAMM4.080e-11581.99DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A4A660_9GAMM3.140e-11281.04DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A2E2XEG8_9GAMM8.390e-11278.20DNA-directed RNA polymerase subunit alpha n=10 Tax... [more]
B8KWI7_9GAMM2.560e-11178.67DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
UPI00036B387C3.630e-11179.15DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
I2JLX6_9GAMM5.770e-11078.67DNA-directed RNA polymerase subunit alpha n=11 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105416contigM-pyrifera_M_contig105416:3..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score396.0
Seed ortholog evalue1.1e-107
Seed eggNOG ortholog1121937.AUHJ01000019_gene1320
Preferred namerpoA
KEGG rclassRC02795
KEGG koko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EggNOG OGs1MU75@1224,1RMU3@1236,464HA@72275,COG0202@1,COG0202@2
EC2.7.7.6
COG Functional cat.K
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size633
Cds size624
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.124993-UTR-M-pyrifera_M_contig105416:2..111622815562.124993-UTR-M-pyrifera_M_contig105416:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105416 3..11 +
1692277464.957835-UTR-M-pyrifera_M_contig105416:2..111692277464.957835-UTR-M-pyrifera_M_contig105416:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105416 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.145255-CDS-M-pyrifera_M_contig105416:11..6351622815562.145255-CDS-M-pyrifera_M_contig105416:11..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105416 12..635 +
1692277464.9704716-CDS-M-pyrifera_M_contig105416:11..6351692277464.9704716-CDS-M-pyrifera_M_contig105416:11..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105416 12..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105416.1156.1prot_M-pyrifera_M_contig105416.1156.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105416 12..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105416.1156.1

>prot_M-pyrifera_M_contig105416.1156.1 ID=prot_M-pyrifera_M_contig105416.1156.1|Name=mRNA_M-pyrifera_M_contig105416.1156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAEL
TLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRG
YSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKL
VLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADP
TLLRPADD
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mRNA from alignment at M-pyrifera_M_contig105416:3..635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105416.1156.1 ID=mRNA_M-pyrifera_M_contig105416.1156.1|Name=mRNA_M-pyrifera_M_contig105416.1156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig105416:3..635+ (Macrocystis pyrifera P11B4 male)
CTGTCTTCCATGCCCGGCTGCGCGATCACCGAAGTGGAAATCGATGGTGT
TGAGCATGAGTACAGCGCAATCGAGGGTGTGCAGGAAGACGTCATCGAGA
TCCTGTTGAACCTCAAGGGTGTAGCGCTGGTCATGAACGGCAAGGAAGAA
GCCGAGTTGACCCTGAGCCGTAAAGGCCCCGGTGTGGTGACGGCGGGTGA
CATTCAGGTCGACCACGACATCGAGATCCGCAACCCCGATCACGTGATTT
GTCACCTCAATGGCAGCTCAGACATCAGCATGAAGCTGACTGTAGCGCGT
GGCCGTGGTTACTCGCCGGCAGATTCACGGGAAAACCCCGAAGAGGAAAC
ACGCGCCATTGGCCGCCTGCACCTCGACGCGACGTTTTCGCCGATCAACC
GCGTAGCCTACGTTGTAGAGGCAGCGCGTGTAGAACAGCGCACCGACCTC
GACAAACTGGTGCTGGACCTCGAGACCAACGGCACCATCGATCCCGAGGA
AGCCATTCGCCGCGCGGCAACAATCCTGCAGCAACAGCTTGCGGTGTTCG
TTGACCTGGAAAGCGAAAGCCAGAGCGAGCCCGTGATCGAGGAAGACGAA
GCCGACCCGACCCTGCTGCGCCCGGCCGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105416:3..635+

>mRNA_M-pyrifera_M_contig105416.1156.1 ID=mRNA_M-pyrifera_M_contig105416.1156.1|Name=mRNA_M-pyrifera_M_contig105416.1156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig105416:3..635+ (Macrocystis pyrifera P11B4 male)
ATGCCCGGCTGCGCGATCACCGAAGTGGAAATCGATGGTGTTGAGCATGA
GTACAGCGCAATCGAGGGTGTGCAGGAAGACGTCATCGAGATCCTGTTGA
ACCTCAAGGGTGTAGCGCTGGTCATGAACGGCAAGGAAGAAGCCGAGTTG
ACCCTGAGCCGTAAAGGCCCCGGTGTGGTGACGGCGGGTGACATTCAGGT
CGACCACGACATCGAGATCCGCAACCCCGATCACGTGATTTGTCACCTCA
ATGGCAGCTCAGACATCAGCATGAAGCTGACTGTAGCGCGTGGCCGTGGT
TACTCGCCGGCAGATTCACGGGAAAACCCCGAAGAGGAAACACGCGCCAT
TGGCCGCCTGCACCTCGACGCGACGTTTTCGCCGATCAACCGCGTAGCCT
ACGTTGTAGAGGCAGCGCGTGTAGAACAGCGCACCGACCTCGACAAACTG
GTGCTGGACCTCGAGACCAACGGCACCATCGATCCCGAGGAAGCCATTCG
CCGCGCGGCAACAATCCTGCAGCAACAGCTTGCGGTGTTCGTTGACCTGG
AAAGCGAAAGCCAGAGCGAGCCCGTGATCGAGGAAGACGAAGCCGACCCG
ACCCTGCTGCGCCCGGCCGACGACATGCCCGGCTGCGCGATCACCGAAGT
GGAAATCGATGGTGTTGAGCATGAGTACAGCGCAATCGAGGGTGTGCAGG
AAGACGTCATCGAGATCCTGTTGAACCTCAAGGGTGTAGCGCTGGTCATG
AACGGCAAGGAAGAAGCCGAGTTGACCCTGAGCCGTAAAGGCCCCGGTGT
GGTGACGGCGGGTGACATTCAGGTCGACCACGACATCGAGATCCGCAACC
CCGATCACGTGATTTGTCACCTCAATGGCAGCTCAGACATCAGCATGAAG
CTGACTGTAGCGCGTGGCCGTGGTTACTCGCCGGCAGATTCACGGGAAAA
CCCCGAAGAGGAAACACGCGCCATTGGCCGCCTGCACCTCGACGCGACGT
TTTCGCCGATCAACCGCGTAGCCTACGTTGTAGAGGCAGCGCGTGTAGAA
CAGCGCACCGACCTCGACAAACTGGTGCTGGACCTCGAGACCAACGGCAC
CATCGATCCCGAGGAAGCCATTCGCCGCGCGGCAACAATCCTGCAGCAAC
AGCTTGCGGTGTTCGTTGACCTGGAAAGCGAAAGCCAGAGCGAGCCCGTG
ATCGAGGAAGACGAAGCCGACCCGACCCTGCTGCGCCCGGCCGACGAC
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