prot_M-pyrifera_M_contig105416.1156.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig105416.1156.1
Unique Nameprot_M-pyrifera_M_contig105416.1156.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length208
Homology
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: B7S2V1_9GAMM (DNA-directed RNA polymerase subunit alpha n=30 Tax=Proteobacteria TaxID=1224 RepID=B7S2V1_9GAMM)

HSP 1 Score: 352 bits (904), Expect = 4.960e-120
Identity = 181/208 (87.02%), Postives = 191/208 (91.83%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLS+KG G VTA DIQVDHDIEIRNPDHVICHLNG+S+I+MKLTVARGRGYSPADSRENPEEETR+IGRL LDATF+P++RV+YVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLES         EDE DP LLRP DD
Sbjct:   51 MPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSKKGSGAVTAADIQVDHDIEIRNPDHVICHLNGASEINMKLTVARGRGYSPADSRENPEEETRSIGRLQLDATFAPVHRVSYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESXXXXXXXXXEDEVDPILLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2E7IT38_9GAMM (DNA-directed RNA polymerase subunit alpha n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7IT38_9GAMM)

HSP 1 Score: 340 bits (871), Expect = 4.970e-115
Identity = 172/208 (82.69%), Postives = 190/208 (91.35%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCA+TEVEIDGV+HEYSA+EGVQEDVIE+LLNLKGVA+VMNGK++A L LS+KGPGVVTAGDIQVDHDIEI+NP+HVI  LN + +++M+LTV RGRGY PAD+RE  EEETR+IGRL LDATFSPINRVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE  SEP  EEDE DP LLRP DD
Sbjct:   51 MPGCAVTEVEIDGVQHEYSAMEGVQEDVIEVLLNLKGVAVVMNGKDQAVLNLSKKGPGVVTAGDIQVDHDIEIKNPEHVIATLNEAGELNMRLTVGRGRGYVPADAREAGEEETRSIGRLSLDATFSPINRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGDSEPAREEDEVDPILLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A095XTG2_9GAMM (DNA-directed RNA polymerase subunit alpha n=3 Tax=Halieaceae TaxID=1706372 RepID=A0A095XTG2_9GAMM)

HSP 1 Score: 340 bits (871), Expect = 5.140e-115
Identity = 171/208 (82.21%), Postives = 187/208 (89.90%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAITEVEIDGV HEYS IEG+QEDVIEILLNLK VALVM GK+E ELTL+++GPG VTAGDIQ DHD+EIRNP+HVICH+N    +SMK+T ARGRGYSPADSRE+PEEETR+IGRL LDATF+P++RVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE+ SE    EDE DP LLRP DD
Sbjct:   51 MPGCAITEVEIDGVLHEYSTIEGIQEDVIEILLNLKEVALVMAGKDEVELTLTKEGPGAVTAGDIQTDHDVEIRNPEHVICHINDKKALSMKVTAARGRGYSPADSREDPEEETRSIGRLQLDATFTPVHRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEAHSESADSEDEVDPILLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2G6DZS5_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6DZS5_9GAMM)

HSP 1 Score: 337 bits (864), Expect = 5.950e-114
Identity = 169/208 (81.25%), Postives = 190/208 (91.35%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAITEV+IDGV HEYSAIEGVQEDVIEILLNLKGVALV+NGK+EAEL +++ G GVVTAGDIQ+DHD+E+RNP+HVICHLNG S I+++L V RGRGYSPADSR + EEETR+IGRL LDATFSP+ RV+YVVEAARVEQRTDLDKL+LDL+TNGTIDPEEAIRRAATILQQQLAVFVDLESE ++E V EEDE DP LLRP DD
Sbjct:   51 MPGCAITEVQIDGVLHEYSAIEGVQEDVIEILLNLKGVALVLNGKDEAELVINKTGAGVVTAGDIQLDHDVEVRNPEHVICHLNGDSSIAIRLKVMRGRGYSPADSRIDAEEETRSIGRLQLDATFSPVYRVSYVVEAARVEQRTDLDKLILDLQTNGTIDPEEAIRRAATILQQQLAVFVDLESEKEAETVEEEDEVDPILLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: F3KYC8_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Halieaceae TaxID=1706372 RepID=F3KYC8_9GAMM)

HSP 1 Score: 335 bits (859), Expect = 3.420e-113
Identity = 170/208 (81.73%), Postives = 188/208 (90.38%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAITEV+IDGV HEYS IEGVQEDVIEILLNLK VA+V+NGK+EAELTLS+K PG VTAGDI +DHD+EI NPDHVIC++ G S +++KL V+RGRGYSPADSR N E+ETRAIGRL LDATFSPI RVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE ++E V+EEDE DP LLRP DD
Sbjct:   51 MPGCAITEVQIDGVLHEYSTIEGVQEDVIEILLNLKDVAVVLNGKDEAELTLSKKEPGPVTAGDITLDHDVEICNPDHVICNVTGGSGVNLKLVVSRGRGYSPADSRGNEEDETRAIGRLQLDATFSPIRRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGEAEAVVEEDEVDPILLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A4A660_9GAMM (DNA-directed RNA polymerase subunit alpha n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A4A660_9GAMM)

HSP 1 Score: 328 bits (840), Expect = 2.630e-110
Identity = 168/208 (80.77%), Postives = 183/208 (87.98%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVAL+MNGK+EAEL LS++G G VTA DIQ DHDIEI NP+H+IC LN  S + MKLT+ARGRGYSPAD+RENPEEETR+IGRL LDATFSP+ RV+YVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATIL  QL VFVDL+SE+Q+     EDE DP LLRP DD
Sbjct:   51 MPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALIMNGKDEAELVLSKEGEGPVTAADIQTDHDIEICNPEHLICTLNSKSAVHMKLTIARGRGYSPADARENPEEETRSIGRLQLDATFSPVMRVSYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILNDQLRVFVDLQSETQAVTSDAEDEVDPVLLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: A0A2E2XEG8_9GAMM (DNA-directed RNA polymerase subunit alpha n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E2XEG8_9GAMM)

HSP 1 Score: 327 bits (837), Expect = 7.030e-110
Identity = 162/208 (77.88%), Postives = 188/208 (90.38%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCA+TEVEIDGV HEYSAIEGVQEDV EILLNLKGVA+VM+GK++A LTLS+KGPGVVTAGDIQVDH++EI+NP+HVI ++ G  D++MKLTVARGRGY PAD+R + EEETRAIGRL LDA++SP+ R+AY VE+ARVEQRTDLDKL+LDLETNGTIDPEEAIRRAATILQQQLAVFVDLE E ++EP  +E+E DP LLRP DD
Sbjct:   51 MPGCAVTEVEIDGVLHEYSAIEGVQEDVXEILLNLKGVAVVMHGKDQAVLTLSKKGPGVVTAGDIQVDHEVEIKNPEHVIANITGDVDLNMKLTVARGRGYQPADARRSDEEETRAIGRLQLDASYSPVKRLAYQVESARVEQRTDLDKLILDLETNGTIDPEEAIRRAATILQQQLAVFVDLEGEKEAEPEEKEEEIDPVLLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: B8KWI7_9GAMM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Luminiphilus syltensis NOR5-1B TaxID=565045 RepID=B8KWI7_9GAMM)

HSP 1 Score: 325 bits (834), Expect = 2.140e-109
Identity = 163/208 (78.37%), Postives = 184/208 (88.46%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAITEVEIDGV HEYSAIEGVQEDVIEILLNLKGVAL M GK+EAEL+L  KGP  VTAGDIQVDHD+E+ NPDHVIC L    +++++L   RGRGYSPADSRE+PE+ETR+IGRLHLDA+FSPI R++YVVE+ARVEQRTDLDKLV+DLETNGTIDPEEAIRRAATILQQQL+VFVDLESE+Q+    +EDE DP LLRP DD
Sbjct:   51 MPGCAITEVEIDGVLHEYSAIEGVQEDVIEILLNLKGVALTMAGKDEAELSLVAKGPCTVTAGDIQVDHDVEVSNPDHVICTLTSDQELAVRLVAQRGRGYSPADSREDPEDETRSIGRLHLDASFSPIRRISYVVESARVEQRTDLDKLVIDLETNGTIDPEEAIRRAATILQQQLSVFVDLESEAQTTATEQEDEVDPILLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: UPI00036B387C (DNA-directed RNA polymerase subunit alpha n=1 Tax=Dasania marina TaxID=471499 RepID=UPI00036B387C)

HSP 1 Score: 325 bits (833), Expect = 3.040e-109
Identity = 164/208 (78.85%), Postives = 185/208 (88.94%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAI E EIDGV HEYSAIEGV+EDVIEILLNLKGV++VMNGK+EA L+LS+KGPGVVTA DIQVDHDIEI+NP HVI HLN S +I+MKLTV RGRGY P  +R+  ++ETR IGRL LDA++SP++RVAYVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQL+VFVDLESE + EPV EED+ DP LLRP DD
Sbjct:   51 MPGCAIIEAEIDGVLHEYSAIEGVKEDVIEILLNLKGVSIVMNGKDEAVLSLSKKGPGVVTAADIQVDHDIEIKNPGHVIAHLNDSGEINMKLTVGRGRGYVPVGARQTEDDETRTIGRLQLDASYSPVHRVAYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLSVFVDLESEKEVEPVEEEDQVDPILLRPVDD 258          
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Match: I2JLX6_9GAMM (DNA-directed RNA polymerase subunit alpha n=11 Tax=Spongiibacteraceae TaxID=1706375 RepID=I2JLX6_9GAMM)

HSP 1 Score: 322 bits (825), Expect = 4.830e-108
Identity = 163/208 (78.37%), Postives = 189/208 (90.87%), Query Frame = 0
Query:    1 MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAELTLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRGYSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADPTLLRPADD 208
            MPGCAITEVEIDGV HEYSA+EGVQEDVIEILLNLK VA++M+GK++A L+L++KGPGVVTAGDIQ DH+IEI N DHVI +LN   +I+M+LT+ARGRGY PAD+R+N EEETR+IGRL LDA++SPI+RV+YVVE+ARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESE ++EP  EE+E DP LLRP DD
Sbjct:   51 MPGCAITEVEIDGVLHEYSAMEGVQEDVIEILLNLKEVAVIMHGKDQAILSLNKKGPGVVTAGDIQTDHEIEIVNTDHVIANLNDDGEINMRLTIARGRGYVPADARDNGEEETRSIGRLQLDASYSPISRVSYVVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESEGENEPSREENEVDPILLRPVDD 258          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105416.1156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7S2V1_9GAMM4.960e-12087.02DNA-directed RNA polymerase subunit alpha n=30 Tax... [more]
A0A2E7IT38_9GAMM4.970e-11582.69DNA-directed RNA polymerase subunit alpha n=3 Tax=... [more]
A0A095XTG2_9GAMM5.140e-11582.21DNA-directed RNA polymerase subunit alpha n=3 Tax=... [more]
A0A2G6DZS5_9GAMM5.950e-11481.25DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
F3KYC8_9GAMM3.420e-11381.73DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A4A660_9GAMM2.630e-11080.77DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A2E2XEG8_9GAMM7.030e-11077.88DNA-directed RNA polymerase subunit alpha n=10 Tax... [more]
B8KWI7_9GAMM2.140e-10978.37DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
UPI00036B387C3.040e-10978.85DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
I2JLX6_9GAMM4.830e-10878.37DNA-directed RNA polymerase subunit alpha n=11 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 1..183
e-value: 1.2E-64
score: 230.7
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 2..177
e-value: 4.5E-10
score: 39.1
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 3..126
e-value: 2.2E-65
score: 221.8
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 3..127
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 1..177
e-value: 2.2E-65
score: 221.8
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 99..186
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 10..105
e-value: 1.8E-24
score: 86.3
NoneNo IPR availablePANTHERPTHR32108FAMILY NOT NAMEDcoord: 1..192
NoneNo IPR availablePANTHERPTHR32108:SF0DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHAcoord: 1..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105416contigM-pyrifera_M_contig105416:12..635 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105416.1156.1mRNA_M-pyrifera_M_contig105416.1156.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig105416 3..635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig105416.1156.1 ID=prot_M-pyrifera_M_contig105416.1156.1|Name=mRNA_M-pyrifera_M_contig105416.1156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
MPGCAITEVEIDGVEHEYSAIEGVQEDVIEILLNLKGVALVMNGKEEAEL
TLSRKGPGVVTAGDIQVDHDIEIRNPDHVICHLNGSSDISMKLTVARGRG
YSPADSRENPEEETRAIGRLHLDATFSPINRVAYVVEAARVEQRTDLDKL
VLDLETNGTIDPEEAIRRAATILQQQLAVFVDLESESQSEPVIEEDEADP
TLLRPADD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036643RNApol_insert_sf
IPR036603RBP11-like
IPR011262DNA-dir_RNA_pol_insert