mRNA_M-pyrifera_M_contig10461.998.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10461.998.1
Unique NamemRNA_M-pyrifera_M_contig10461.998.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.550e-25
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 LQSALLQKGVPCETRQLPLGDMLWIARHEDDPTSEVLVGYIVERKTASDLASSIVDGR 174
            +QS+LLQKG+ CETRQLPLGDMLWIAR  DDPTSEVL+GYIVERKTASDLASSI+DGR
Sbjct:  264 VQSSLLQKGIRCETRQLPLGDMLWIARKRDDPTSEVLLGYIVERKTASDLASSIIDGR 321
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A836CKB8_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.710e-14
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    4 QSALLQKGVPCETRQLPLGDMLWIARHEDDPT----SEVLVGYIVERKTASDLASSIVDGR 174
            Q+A+L   + CE R LPLGDMLW+AR+ D  +     EVL+GYIVERKTASDL SS+VDGR
Sbjct:   30 QAAVLNANMLCEVRSLPLGDMLWVARNMDRQSPSYLQEVLLGYIVERKTASDLGSSMVDGR 90
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A7R9UCP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.270e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 LQSALLQKGVPCETRQLPLGDMLWIARHEDDPTSEVLVGYIVERKTASDLASSIVDGR 174
            +QS LLQ+GV CE R L LGDM+WIA+        VL  +I+ERK+A+DLA SI+DGR
Sbjct:  450 VQSHLLQRGVSCENRALHLGDMIWIAQDRRSDVEYVL-DFIIERKSAADLAESIIDGR 506
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A642UL28_DIURU (Crossover junction endonuclease MUS81 n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UL28_DIURU)

HSP 1 Score: 64.3 bits (155), Expect = 2.440e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    4 QSALLQKGVPCETRQLPLGDMLWIARHEDDPTSEVLVGYIVERKTASDLASSIVDGR 174
            +  LL+ GV CE+R LP+GDM+W+ARH+     EVL+  I ERK   DLASSI DGR
Sbjct:  284 EEELLRAGVKCESRTLPVGDMVWVARHKISK-KEVLLDVIAERKRIDDLASSIKDGR 339
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A5K3FE98_MESCO (ERCC4 domain-containing protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3FE98_MESCO)

HSP 1 Score: 63.9 bits (154), Expect = 2.830e-10
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LQSALLQKGVPCETRQLPLGDMLWIARHEDDPTS--EVLVGYIVERKTASDLASSIVDGR 174
            L+  L    V  E R LP+GD  WIAR  + PTS  EV++G IVERK A DLASSIVDGR
Sbjct:   71 LKDLLNAHAVSWEARSLPVGDFAWIARSAEGPTSAEEVVLGVIVERKRADDLASSIVDGR 130
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A654I5F0_9CEST (ERCC4 domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654I5F0_9CEST)

HSP 1 Score: 63.9 bits (154), Expect = 3.060e-10
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    1 LQSALLQKGVPCETRQLPLGDMLWIARHEDD-----PTSEVLVGYIVERKTASDLASSIVDGR 174
            L+S L    + CE R LP+GD +W+AR   D     P  EV++G ++ERK A DLASSIVDGR
Sbjct:   99 LRSDLSGVSIGCEVRSLPVGDFVWVARPLSDMSALTPFKEVVIGIVIERKRADDLASSIVDGR 161
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A158QW25_MESCO (ERCC4 domain-containing protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A158QW25_MESCO)

HSP 1 Score: 63.9 bits (154), Expect = 3.420e-10
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LQSALLQKGVPCETRQLPLGDMLWIARHEDDPTS--EVLVGYIVERKTASDLASSIVDGR 174
            L+  L    V  E R LP+GD  WIAR  + PTS  EV++G IVERK A DLASSIVDGR
Sbjct:  198 LKDLLNAHAVSWEARSLPVGDFAWIARSAEGPTSAEEVVLGVIVERKRADDLASSIVDGR 257
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A7M3QYZ8_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QYZ8_SPIER)

HSP 1 Score: 63.9 bits (154), Expect = 3.420e-10
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    1 LQSALLQKGVPCETRQLPLGDMLWIARHEDD-----PTSEVLVGYIVERKTASDLASSIVDGR 174
            L+S L    + CE R LP+GD +W+AR   D     P  EV++G ++ERK A DLASSIVDGR
Sbjct:  265 LRSDLSSVSIGCEVRSLPVGDFVWVARPLSDMNALTPFKEVVLGIVIERKRADDLASSIVDGR 327
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A168MB16_MUCCL (ERCC4 domain-containing protein (Fragment) n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168MB16_MUCCL)

HSP 1 Score: 62.4 bits (150), Expect = 1.200e-9
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    4 QSALLQKGVPCETRQLPLGDMLWIARH--EDDPTSEVLVGYIVERKTASDLASSIVDGRCVQLCTKCMSTKAKK 219
            Q +L  KGVPC TR L LGD++WIAR     +   E+ + YIVERK   DL  SI DGR ++  T+   + A K
Sbjct:  285 QDSLAAKGVPCVTRSLDLGDVMWIARPIGSTNQAEELFLDYIVERKRLDDLVFSIKDGRFIEQKTRLKRSGANK 358
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BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Match: A0A0C9M0V1_9FUNG (Crossover junction endonuclease mus81 protein n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9M0V1_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.220e-9
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    4 QSALLQKGVPCETRQLPLGDMLWIARH--EDDPTSEVLVGYIVERKTASDLASSIVDGRCVQLCTKCMSTKAKK 219
            Q  L  KGVPC TR + LGD++WIAR     +   E+ + YIVERK   DL SSI DGR ++  T+   + A K
Sbjct:  825 QDCLTAKGVPCITRSMGLGDVIWIARPIGSTNRAEELFLDYIVERKRLDDLVSSIKDGRFIEQKTRLKRSGANK 898
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10461.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7R8_9PHAE5.550e-2586.21ERCC4 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CKB8_9STRA1.710e-1462.30Restriction endonuclease type II-like protein n=1 ... [more]
A0A7R9UCP7_9STRA7.270e-1156.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A642UL28_DIURU2.440e-1056.14Crossover junction endonuclease MUS81 n=1 Tax=Diut... [more]
A0A5K3FE98_MESCO2.830e-1058.33ERCC4 domain-containing protein n=2 Tax=Mesocestoi... [more]
A0A654I5F0_9CEST3.060e-1050.79ERCC4 domain-containing protein n=1 Tax=Sparganum ... [more]
A0A158QW25_MESCO3.420e-1058.33ERCC4 domain-containing protein n=1 Tax=Mesocestoi... [more]
A0A7M3QYZ8_SPIER3.420e-1050.79Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A168MB16_MUCCL1.200e-945.95ERCC4 domain-containing protein (Fragment) n=2 Tax... [more]
A0A0C9M0V1_9FUNG1.220e-945.95Crossover junction endonuclease mus81 protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10461contigM-pyrifera_M_contig10461:882..1100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D8LQM7
Preferred nameMus81
KEGG koko:K08991
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000793,GO:0000794,GO:0002164,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007095,GO:0007127,GO:0007129,GO:0007131,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0031297,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0040019,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045132,GO:0045143,GO:0045786,GO:0045930,GO:0045995,GO:0046483,GO:0048256,GO:0048257,GO:0048285,GO:0048476,GO:0048518,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051026,GO:0051094,GO:0051239,GO:0051240,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:2000026
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG2379@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.2009106-CDS-M-pyrifera_M_contig10461:881..11001622815554.2009106-CDS-M-pyrifera_M_contig10461:881..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10461 882..1100 -
1692277461.4111297-CDS-M-pyrifera_M_contig10461:881..11001692277461.4111297-CDS-M-pyrifera_M_contig10461:881..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10461 882..1100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10461.998.1prot_M-pyrifera_M_contig10461.998.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10461 882..1100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10461.998.1

>prot_M-pyrifera_M_contig10461.998.1 ID=prot_M-pyrifera_M_contig10461.998.1|Name=mRNA_M-pyrifera_M_contig10461.998.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
LQSALLQKGVPCETRQLPLGDMLWIARHEDDPTSEVLVGYIVERKTASDL
ASSIVDGRCVQLCTKCMSTKAKK
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mRNA from alignment at M-pyrifera_M_contig10461:882..1100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10461.998.1 ID=mRNA_M-pyrifera_M_contig10461.998.1|Name=mRNA_M-pyrifera_M_contig10461.998.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig10461:882..1100- (Macrocystis pyrifera P11B4 male)
CTCCAGTCCGCCCTGCTGCAAAAGGGAGTGCCGTGCGAGACGCGACAGCT
CCCCCTCGGCGACATGCTCTGGATCGCCAGGCACGAGGATGACCCCACGT
CCGAAGTGCTCGTGGGGTATATCGTCGAGCGGAAGACGGCCTCGGACCTC
GCCAGCAGCATCGTCGATGGCCGGTGCGTTCAGCTTTGTACGAAGTGCAT
GTCTACAAAAGCTAAAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10461:882..1100-

>mRNA_M-pyrifera_M_contig10461.998.1 ID=mRNA_M-pyrifera_M_contig10461.998.1|Name=mRNA_M-pyrifera_M_contig10461.998.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig10461:882..1100- (Macrocystis pyrifera P11B4 male)
CTCCAGTCCGCCCTGCTGCAAAAGGGAGTGCCGTGCGAGACGCGACAGCT
CCCCCTCGGCGACATGCTCTGGATCGCCAGGCACGAGGATGACCCCACGT
CCGAAGTGCTCGTGGGGTATATCGTCGAGCGGAAGACGGCCTCGGACCTC
GCCAGCAGCATCGTCGATGGCCGGTGCGTTCAGCTTTGTACGAAGTGCAT
GTCTACAAAAGCTAAAAAGCTCCAGTCCGCCCTGCTGCAAAAGGGAGTGC
CGTGCGAGACGCGACAGCTCCCCCTCGGCGACATGCTCTGGATCGCCAGG
CACGAGGATGACCCCACGTCCGAAGTGCTCGTGGGGTATATCGTCGAGCG
GAAGACGGCCTCGGACCTCGCCAGCAGCATCGTCGATGGCCGGTGCGTTC
AGCTTTGTACGAAGTGCATGTCTACAAAAGCTAAAAAG
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