mRNA_M-pyrifera_M_contig104561.980.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104561.980.1
Unique NamemRNA_M-pyrifera_M_contig104561.980.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: UPI000F0B767E (hypothetical protein n=1 Tax=Haliea alexandrii TaxID=2448162 RepID=UPI000F0B767E)

HSP 1 Score: 156 bits (394), Expect = 5.300e-48
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWRAR 267
            MDAK IVALVV IAVAAHVVLYRWVKFKIQEGVIL FLRDARDEGAPAH+HAA IAAHTQLSAERVAAVCARSKE++ADPQAEHSWRAR
Sbjct:    1 MDAKFIVALVVVIAVAAHVVLYRWVKFKIQEGVILQFLRDARDEGAPAHHHAAAIAAHTQLSAERVAAVCARSKEVMADPQAEHSWRAR 89          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A2D4TD64_9GAMM (Uncharacterized protein n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A2D4TD64_9GAMM)

HSP 1 Score: 149 bits (375), Expect = 4.190e-45
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWRAR 267
            MDAKIIVALVV IAVAAHVVLYRWVKFKIQEGVIL FLRDAR++GAPAH+HA  IAAHTQLS ERVA VCARSK+ILADPQAEHSWR R
Sbjct:    1 MDAKIIVALVVIIAVAAHVVLYRWVKFKIQEGVILQFLRDAREDGAPAHHHAVAIAAHTQLSPERVATVCARSKDILADPQAEHSWRVR 89          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: UPI000404265B (hypothetical protein n=1 Tax=Haliea salexigens TaxID=287487 RepID=UPI000404265B)

HSP 1 Score: 126 bits (316), Expect = 4.420e-36
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWR 261
            MDAKIIVALVV IAVAAHVVLYRWVKFKIQEGVIL FLRDAR+EGAP H+H   IAAHT LS  RV  VC +SK++L DP   HSWR
Sbjct:    1 MDAKIIVALVVIIAVAAHVVLYRWVKFKIQEGVILQFLRDAREEGAPDHHHVDAIAAHTGLSVARVKTVCEKSKQVLPDPAVAHSWR 87          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A2E7C6W7_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C6W7_9GAMM)

HSP 1 Score: 125 bits (313), Expect = 1.230e-35
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWRAR 267
            M A+ +V +VV +A+ AHV LYRWVKFKIQEGVIL FLRDA +EGAP H+HA  IA HTQLSAERVAAVCARSKEI+ADP+   SWRAR
Sbjct:    1 MSAQAVVFVVVVVALIAHVALYRWVKFKIQEGVILQFLRDAAEEGAPDHHHATAIAVHTQLSAERVAAVCARSKEIIADPEDGQSWRAR 89          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A3N5QDT3_9DELT (Uncharacterized protein n=1 Tax=Geobacteraceae bacterium TaxID=2282154 RepID=A0A3N5QDT3_9DELT)

HSP 1 Score: 110 bits (275), Expect = 8.290e-30
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWRA 264
            M+++II+ALVV +AVAAHV +YRWVKFKI EGVIL FLRDA + GAP H+HA  IAAHT +S +RV  VC +S EI +DP  E+SWRA
Sbjct:    1 MESQIIIALVVLVAVAAHVAIYRWVKFKIHEGVILQFLRDAGEGGAPDHHHADAIAAHTGVSVKRVILVCRKSVEIHSDPDVENSWRA 88          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A2N5WZ46_9GAMM (Uncharacterized protein n=1 Tax=Pseudohalioglobus lutimaris TaxID=1737061 RepID=A0A2N5WZ46_9GAMM)

HSP 1 Score: 102 bits (255), Expect = 7.990e-27
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   13 IIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWR 261
            II+A VV IA+ AHV LYRWVKF+IQEGVIL +LRD  D GAP H+H   IAAHT+L+ +RVA VC RS++I  DP A  SWR
Sbjct:    4 IIIAAVVVIALLAHVALYRWVKFEIQEGVILQYLRDEADSGAPDHHHTETIAAHTRLAKDRVAKVCQRSRDIRPDPDAVDSWR 86          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A5B0WNA9_9GAMM (Uncharacterized protein n=1 Tax=Pseudohalioglobus sp. NY5 TaxID=2606449 RepID=A0A5B0WNA9_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 3.870e-20
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   13 IIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWR 261
            +IVA VV +AV AHV LYRWV+FKI EGVI+ FLRDA + GA A   A  IAAHT+L  +RV AVCARS  + AD     +WR
Sbjct:    4 VIVAAVVIVAVLAHVALYRWVRFKIHEGVIIQFLRDAAENGA-AGSSATDIAAHTELPLKRVQAVCARSNAVCADASTPDNWR 85          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A1Y0KQH6_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas sp. M30-35 TaxID=1981174 RepID=A0A1Y0KQH6_9PSED)

HSP 1 Score: 82.8 bits (203), Expect = 6.720e-19
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWR 261
            M  KII+A+VV +++AAH  LYRWVKFKI EGV+L  L DA+     AH  +  IA HTQ+  +RVA VC +S +I   P AE +W+
Sbjct:    1 MSEKIIIAVVVIVSLAAHYWLYRWVKFKIDEGVVLKCLEDAKTTSGDAHLSSQSIAQHTQMKLQRVATVCQQSPKIQHSPGAEDTWQ 87          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A238ZV29_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas segetis TaxID=298908 RepID=A0A238ZV29_9PSED)

HSP 1 Score: 77.0 bits (188), Expect = 1.280e-16
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSWR 261
            M  KII+ALVV +++AAH  LYRWVKFKI EGVIL  L DA+         +  IA  TQ+  +R+A VC +S  I + P AE +W+
Sbjct:    1 MSEKIIIALVVIVSLAAHYWLYRWVKFKIDEGVILKCLEDAKAASGQGQLDSPSIARQTQMKPQRIAQVCRQSPRIQSSPGAEETWK 87          
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Match: A0A1E5X6D0_9PSED (Uncharacterized protein n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1E5X6D0_9PSED)

HSP 1 Score: 71.2 bits (173), Expect = 2.480e-14
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*FLRDARDEGAPAHYHAAVIAAHTQLSAERVAAVCARSKEILADPQAEHSW 258
            M+AK+I+A+VV +A+  H  LY+W+KFKI EGV+L FLRDA        + A  +A    L  +RV AVC RS EI+A   A  +W
Sbjct:    1 MEAKVIIAIVVIVALIGHYWLYKWIKFKIDEGVVLKFLRDAAGTNPETLHTAQDMAEALLLPPDRVRAVCTRSPEIIAVQGAPDTW 86          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104561.980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
UPI000F0B767E5.300e-4892.13hypothetical protein n=1 Tax=Haliea alexandrii Tax... [more]
A0A2D4TD64_9GAMM4.190e-4587.64Uncharacterized protein n=2 Tax=Halieaceae TaxID=1... [more]
UPI000404265B4.420e-3675.86hypothetical protein n=1 Tax=Haliea salexigens Tax... [more]
A0A2E7C6W7_9GAMM1.230e-3573.03Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1... [more]
A0A3N5QDT3_9DELT8.290e-3064.77Uncharacterized protein n=1 Tax=Geobacteraceae bac... [more]
A0A2N5WZ46_9GAMM7.990e-2763.86Uncharacterized protein n=1 Tax=Pseudohalioglobus ... [more]
A0A5B0WNA9_9GAMM3.870e-2059.04Uncharacterized protein n=1 Tax=Pseudohalioglobus ... [more]
A0A1Y0KQH6_9PSED6.720e-1950.57Uncharacterized protein n=1 Tax=Pseudomonas sp. M3... [more]
A0A238ZV29_9PSED1.280e-1648.28Uncharacterized protein n=1 Tax=Pseudomonas segeti... [more]
A0A1E5X6D0_9PSED2.480e-1446.51Uncharacterized protein n=4 Tax=Pseudomonadaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104561contigM-pyrifera_M_contig104561:326..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.2
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog1121937.AUHJ01000002_gene3539
Hectar predicted targeting categorysignal peptide
EggNOG OGs1PA2R@1224,1SUJ9@1236,28Q6S@1,2ZCPQ@2
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size108
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.1197581-UTR-M-pyrifera_M_contig104561:325..4841622815553.1197581-UTR-M-pyrifera_M_contig104561:325..484Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104561 326..484 -
1692277460.823751-UTR-M-pyrifera_M_contig104561:325..4841692277460.823751-UTR-M-pyrifera_M_contig104561:325..484Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104561 326..484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.1324823-CDS-M-pyrifera_M_contig104561:484..5921622815553.1324823-CDS-M-pyrifera_M_contig104561:484..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104561 485..592 -
1692277460.8441548-CDS-M-pyrifera_M_contig104561:484..5921692277460.8441548-CDS-M-pyrifera_M_contig104561:484..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104561 485..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104561.980.1prot_M-pyrifera_M_contig104561.980.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104561 485..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104561.980.1

>prot_M-pyrifera_M_contig104561.980.1 ID=prot_M-pyrifera_M_contig104561.980.1|Name=mRNA_M-pyrifera_M_contig104561.980.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
MDAKIIVALVVFIAVAAHVVLYRWVKFKIQEGVIL*
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mRNA from alignment at M-pyrifera_M_contig104561:326..592-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104561.980.1 ID=mRNA_M-pyrifera_M_contig104561.980.1|Name=mRNA_M-pyrifera_M_contig104561.980.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig104561:326..592- (Macrocystis pyrifera P11B4 male)
ATGGATGCAAAGATCATAGTTGCGCTGGTCGTGTTCATTGCGGTCGCTGC GCATGTGGTGTTGTACCGCTGGGTAAAGTTCAAGATTCAGGAGGGCGTCA TTCTGTAGTTTCTGCGCGATGCACGTGACGAGGGTGCGCCCGCGCATTAT CACGCGGCGGTGATTGCCGCCCACACGCAGTTATCTGCGGAGCGGGTGGC CGCAGTCTGCGCGCGGAGCAAGGAAATTCTGGCTGACCCGCAGGCGGAGC ACAGCTGGCGCGCCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104561:326..592-

>mRNA_M-pyrifera_M_contig104561.980.1 ID=mRNA_M-pyrifera_M_contig104561.980.1|Name=mRNA_M-pyrifera_M_contig104561.980.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig104561:326..592- (Macrocystis pyrifera P11B4 male)
ATGGATGCAAAGATCATAGTTGCGCTGGTCGTGTTCATTGCGGTCGCTGC
GCATGTGGTGTTGTACCGCTGGGTAAAGTTCAAGATTCAGGAGGGCGTCA
TTCTGTAGATGGATGCAAAGATCATAGTTGCGCTGGTCGTGTTCATTGCG
GTCGCTGCGCATGTGGTGTTGTACCGCTGGGTAAAGTTCAAGATTCAGGA
GGGCGTCATTCTGTAG
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