mRNA_M-pyrifera_M_contig104489.968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104489.968.1
Unique NamemRNA_M-pyrifera_M_contig104489.968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104489.968.1 vs. uniprot
Match: UPI0003F0B912 (low affinity immunoglobulin epsilon Fc receptor-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B912)

HSP 1 Score: 50.1 bits (118), Expect = 1.940e-5
Identity = 23/67 (34.33%), Postives = 33/67 (49.25%), Query Frame = 1 
Query:    7 PDDCVLGEWGPWGNCSETCGGVGVMQRMREVLQPQMSTSGRSCVEVGGGSSLEEVLVEEQECAPESC 207
            P+DC +G+WGPW +CS  CG  G M R R+++         +  + GG  S    L + Q C    C
Sbjct:   35 PEDCTVGQWGPWSSCSAPCGTSGTMSRTRDIV---------TAAQCGGSCSFS--LTDSQSCNVGGC 90
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BLAST of mRNA_M-pyrifera_M_contig104489.968.1 vs. uniprot
Match: A0A5C6PKM4_9TELE (Thrombospondin type-1 domain-containing protein 7A n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6PKM4_9TELE)

HSP 1 Score: 48.5 bits (114), Expect = 8.140e-5
Identity = 22/43 (51.16%), Postives = 25/43 (58.14%), Query Frame = 1 
Query:    7 PDDCVLGEWGPWGNCSETCGGVGVMQRMREVLQPQMSTSGRSC 135
            PDDCVLG+WGPW +CS  C       R R VL+P     GR C
Sbjct: 1024 PDDCVLGDWGPWSHCSLPCTRANNRVRTRSVLRPP--AVGRKC 1064
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BLAST of mRNA_M-pyrifera_M_contig104489.968.1 vs. uniprot
Match: A0A4Z2CD18_9TELE (Uncharacterized protein n=2 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2CD18_9TELE)

HSP 1 Score: 48.5 bits (114), Expect = 8.170e-5
Identity = 22/43 (51.16%), Postives = 25/43 (58.14%), Query Frame = 1 
Query:    7 PDDCVLGEWGPWGNCSETCGGVGVMQRMREVLQPQMSTSGRSC 135
            PDDCVLG+WGPW +CS  C       R R VL+P     GR C
Sbjct: 1102 PDDCVLGDWGPWSHCSLPCTRANNRVRTRSVLRPP--AVGRKC 1142
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BLAST of mRNA_M-pyrifera_M_contig104489.968.1 vs. uniprot
Match: A0A2D5ME30_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5ME30_9PLAN)

HSP 1 Score: 48.5 bits (114), Expect = 8.190e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   13 DCVLGEWGPWGNCSETCGGVGVMQRMREVLQPQMSTS 123
            DC++ EWG WGNCSE C G GV  R+RE+ Q ++  S
Sbjct: 1114 DCIVKEWGEWGNCSEPCNG-GVQWRVREIFQDRLQGS 1149
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BLAST of mRNA_M-pyrifera_M_contig104489.968.1 vs. uniprot
Match: A0A2A9MJQ1_9APIC (LNR domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MJQ1_9APIC)

HSP 1 Score: 48.5 bits (114), Expect = 8.250e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    7 PDDCVLGEWGPWGNCSETCGGVGVMQRMREVLQPQMSTSGRSCVEV 144
            P++CV+ +WG WG+CS TCG  G  +R RE+L+    T+G+ C E+
Sbjct:  535 PENCVVSDWGEWGDCSTTCG-EGQSRRHREILK-HPDTNGQKCPEI 578
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104489.968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0003F0B9121.940e-534.33low affinity immunoglobulin epsilon Fc receptor-li... [more]
A0A5C6PKM4_9TELE8.140e-551.16Thrombospondin type-1 domain-containing protein 7A... [more]
A0A4Z2CD18_9TELE8.170e-551.16Uncharacterized protein n=2 Tax=Takifugu bimaculat... [more]
A0A2D5ME30_9PLAN8.190e-554.05Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2A9MJQ1_9APIC8.250e-545.65LNR domain-containing protein n=1 Tax=Besnoitia be... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104489contigM-pyrifera_M_contig104489:4..210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.2529373-CDS-M-pyrifera_M_contig104489:3..2101622815552.2529373-CDS-M-pyrifera_M_contig104489:3..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104489 4..210 -
1692277460.3433619-CDS-M-pyrifera_M_contig104489:3..2101692277460.3433619-CDS-M-pyrifera_M_contig104489:3..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104489 4..210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104489.968.1prot_M-pyrifera_M_contig104489.968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104489 4..210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104489.968.1

>prot_M-pyrifera_M_contig104489.968.1 ID=prot_M-pyrifera_M_contig104489.968.1|Name=mRNA_M-pyrifera_M_contig104489.968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
GGPDDCVLGEWGPWGNCSETCGGVGVMQRMREVLQPQMSTSGRSCVEVGG
GSSLEEVLVEEQECAPESC
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mRNA from alignment at M-pyrifera_M_contig104489:4..210-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104489.968.1 ID=mRNA_M-pyrifera_M_contig104489.968.1|Name=mRNA_M-pyrifera_M_contig104489.968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig104489:4..210- (Macrocystis pyrifera P11B4 male)
GGTGGACCTGATGATTGTGTGCTTGGAGAGTGGGGACCATGGGGCAATTG
CAGTGAAACTTGTGGAGGTGTTGGAGTGATGCAGAGAATGCGTGAAGTGT
TGCAGCCACAAATGAGTACGAGTGGTAGATCATGTGTAGAAGTGGGTGGT
GGCAGTAGCTTGGAAGAAGTGTTGGTGGAGGAACAAGAATGTGCGCCGGA
ATCTTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104489:4..210-

>mRNA_M-pyrifera_M_contig104489.968.1 ID=mRNA_M-pyrifera_M_contig104489.968.1|Name=mRNA_M-pyrifera_M_contig104489.968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig104489:4..210- (Macrocystis pyrifera P11B4 male)
GGTGGACCTGATGATTGTGTGCTTGGAGAGTGGGGACCATGGGGCAATTG
CAGTGAAACTTGTGGAGGTGTTGGAGTGATGCAGAGAATGCGTGAAGTGT
TGCAGCCACAAATGAGTACGAGTGGTAGATCATGTGTAGAAGTGGGTGGT
GGCAGTAGCTTGGAAGAAGTGTTGGTGGAGGAACAAGAATGTGCGCCGGA
ATCTTGTGGTGGACCTGATGATTGTGTGCTTGGAGAGTGGGGACCATGGG
GCAATTGCAGTGAAACTTGTGGAGGTGTTGGAGTGATGCAGAGAATGCGT
GAAGTGTTGCAGCCACAAATGAGTACGAGTGGTAGATCATGTGTAGAAGT
GGGTGGTGGCAGTAGCTTGGAAGAAGTGTTGGTGGAGGAACAAGAATGTG
CGCCGGAATCTTGT
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