mRNA_M-pyrifera_M_contig104470.963.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104470.963.1
Unique NamemRNA_M-pyrifera_M_contig104470.963.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104470.963.1 vs. uniprot
Match: A0A517P908_9PLAN (Uncharacterized protein n=1 Tax=Alienimonas californiensis TaxID=2527989 RepID=A0A517P908_9PLAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.710e-9
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:  400 VTKTVPGPVIIKHVQTPGRYRYNRNTCCCEYVPGRCRKVRCQGCPQTVCCKVCCPKCVKKEVCCTRMVPECC 615
            V +TVPGP+I K VQ PGR  YN  TC  EY     R V C G  +T+  +VCCPK V+KEV CTR V E C
Sbjct:  235 VQRTVPGPMIRKTVQEPGRCVYNPQTCRYEYXXXXXRTVCCPGPERTIXEQVCCPKVVQKEVSCTRYVSEVC 306
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104470.963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517P908_9PLAN1.710e-954.17Uncharacterized protein n=1 Tax=Alienimonas califo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104470contigM-pyrifera_M_contig104470:3..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.9
Seed ortholog evalue9.5e-11
Seed eggNOG ortholog595460.RRSWK_06451
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YTV
EggNOG OGs2DBPY@1,2IXW7@203682,2ZABD@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.9570072-CDS-M-pyrifera_M_contig104470:2..6201622815551.9570072-CDS-M-pyrifera_M_contig104470:2..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104470 3..620 -
1692277460.1921432-CDS-M-pyrifera_M_contig104470:2..6201692277460.1921432-CDS-M-pyrifera_M_contig104470:2..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104470 3..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104470.963.1prot_M-pyrifera_M_contig104470.963.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104470 3..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104470.963.1

>prot_M-pyrifera_M_contig104470.963.1 ID=prot_M-pyrifera_M_contig104470.963.1|Name=mRNA_M-pyrifera_M_contig104470.963.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
TCHRTVYDTCYKEVPYTVCKPVHTTCYKQCCYQVRVPHYQTCYRTVTCNI
RKPCYKTCHRDVCYTVCKPVYNTCYRDVCYTVRKPCYNTCYKQVCCTQYK
TESKTCYRTVNYTVCKPVTETRYVDEIVNEYKTVTKTVPGPVIIKHVQTP
GRYRYNRNTCCCEYVPGRCRKVRCQGCPQTVCCKVCCPKCVKKEVCCTRM
VPECCT
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mRNA from alignment at M-pyrifera_M_contig104470:3..620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104470.963.1 ID=mRNA_M-pyrifera_M_contig104470.963.1|Name=mRNA_M-pyrifera_M_contig104470.963.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig104470:3..620- (Macrocystis pyrifera P11B4 male)
ACCTGCCATCGCACTGTCTACGACACGTGCTACAAGGAAGTGCCTTACAC
AGTCTGTAAGCCGGTCCATACGACCTGCTACAAGCAGTGCTGTTACCAGG
TTCGCGTGCCGCACTACCAGACCTGTTACCGGACCGTCACCTGCAACATC
CGCAAGCCGTGCTACAAAACGTGCCACCGCGATGTCTGCTACACCGTCTG
TAAGCCGGTCTACAACACCTGCTACCGGGACGTGTGCTACACGGTCCGCA
AGCCGTGCTACAACACCTGCTACAAGCAAGTGTGTTGCACACAGTACAAG
ACCGAGAGCAAGACCTGCTATCGCACGGTCAACTACACTGTCTGCAAGCC
AGTCACCGAGACTCGCTACGTGGACGAAATCGTTAACGAGTACAAGACAG
TCACCAAGACCGTTCCCGGTCCAGTGATTATCAAGCACGTCCAGACTCCT
GGTCGGTACCGTTACAACCGCAACACTTGCTGCTGTGAGTACGTTCCGGG
TCGCTGCCGCAAGGTTCGCTGCCAGGGTTGCCCGCAGACTGTTTGCTGCA
AGGTTTGCTGCCCGAAGTGTGTGAAGAAGGAAGTTTGCTGCACCCGTATG
GTTCCCGAGTGCTGCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104470:3..620-

>mRNA_M-pyrifera_M_contig104470.963.1 ID=mRNA_M-pyrifera_M_contig104470.963.1|Name=mRNA_M-pyrifera_M_contig104470.963.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig104470:3..620- (Macrocystis pyrifera P11B4 male)
ACCTGCCATCGCACTGTCTACGACACGTGCTACAAGGAAGTGCCTTACAC
AGTCTGTAAGCCGGTCCATACGACCTGCTACAAGCAGTGCTGTTACCAGG
TTCGCGTGCCGCACTACCAGACCTGTTACCGGACCGTCACCTGCAACATC
CGCAAGCCGTGCTACAAAACGTGCCACCGCGATGTCTGCTACACCGTCTG
TAAGCCGGTCTACAACACCTGCTACCGGGACGTGTGCTACACGGTCCGCA
AGCCGTGCTACAACACCTGCTACAAGCAAGTGTGTTGCACACAGTACAAG
ACCGAGAGCAAGACCTGCTATCGCACGGTCAACTACACTGTCTGCAAGCC
AGTCACCGAGACTCGCTACGTGGACGAAATCGTTAACGAGTACAAGACAG
TCACCAAGACCGTTCCCGGTCCAGTGATTATCAAGCACGTCCAGACTCCT
GGTCGGTACCGTTACAACCGCAACACTTGCTGCTGTGAGTACGTTCCGGG
TCGCTGCCGCAAGGTTCGCTGCCAGGGTTGCCCGCAGACTGTTTGCTGCA
AGGTTTGCTGCCCGAAGTGTGTGAAGAAGGAAGTTTGCTGCACCCGTATG
GTTCCCGAGTGCTGCACCACCTGCCATCGCACTGTCTACGACACGTGCTA
CAAGGAAGTGCCTTACACAGTCTGTAAGCCGGTCCATACGACCTGCTACA
AGCAGTGCTGTTACCAGGTTCGCGTGCCGCACTACCAGACCTGTTACCGG
ACCGTCACCTGCAACATCCGCAAGCCGTGCTACAAAACGTGCCACCGCGA
TGTCTGCTACACCGTCTGTAAGCCGGTCTACAACACCTGCTACCGGGACG
TGTGCTACACGGTCCGCAAGCCGTGCTACAACACCTGCTACAAGCAAGTG
TGTTGCACACAGTACAAGACCGAGAGCAAGACCTGCTATCGCACGGTCAA
CTACACTGTCTGCAAGCCAGTCACCGAGACTCGCTACGTGGACGAAATCG
TTAACGAGTACAAGACAGTCACCAAGACCGTTCCCGGTCCAGTGATTATC
AAGCACGTCCAGACTCCTGGTCGGTACCGTTACAACCGCAACACTTGCTG
CTGTGAGTACGTTCCGGGTCGCTGCCGCAAGGTTCGCTGCCAGGGTTGCC
CGCAGACTGTTTGCTGCAAGGTTTGCTGCCCGAAGTGTGTGAAGAAGGAA
GTTTGCTGCACCCGTATGGTTCCCGAGTGCTGCACC
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