mRNA_M-pyrifera_M_contig104463.960.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104463.960.1
Unique NamemRNA_M-pyrifera_M_contig104463.960.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Match: A0A078B620_STYLE (PAP-associated domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B620_STYLE)

HSP 1 Score: 51.2 bits (121), Expect = 9.960e-6
Identity = 30/100 (30.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:    1 GGLDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQDKGSMGKAFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN 300
            GG D++    LG  L  F + +G + NY  +G+S+   +     K   G    +      L+ ++P +++ ++GG+AF I+RV RA+Q A ++L F   N
Sbjct:   42 GGTDKID---LGRHLIDFLELYGTKFNYEDIGISIR-DDGFYYQKSKRGWQGYDERTRSKLSVENPQDSEVDIGGSAFNIKRVQRAFQHAYDTLIFNNSN 137
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BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Match: J9I2X3_9SPIT (Poly(A) RNA polymerase putative n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I2X3_9SPIT)

HSP 1 Score: 51.6 bits (122), Expect = 1.880e-5
Identity = 33/100 (33.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:    7 LDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQD--KGSMGKAFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN 300
            L   + L+LG  L  FF  +G   NY  VG+S+       Q   +G  G+  R+ E    L+ ++P + + ++GG+AF I+RV RA+Q A ++L +   N
Sbjct:  195 LGNTNNLDLGKQLLDFFKLYGTEFNYQHVGISIRDGGFYYQKYKRGWEGRDERSYE---RLSVENPQDPEVDIGGSAFNIKRVQRAFQHAYDTLIYNNSN 291
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BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Match: A0A8J8T226_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T226_HALGN)

HSP 1 Score: 51.6 bits (122), Expect = 1.970e-5
Identity = 30/99 (30.30%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:    4 GLDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQDKGSMGKAFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN 300
            G  +   ++LG  L  FF+++G + NY  VG+S+  +E     K + G    +      L+ ++P + D ++GG+A+ I++V RA+Q A ++L F   N
Sbjct:  234 GGGKTEKIDLGKHLIDFFEFYGTKFNYEDVGISIR-EEGFYFPKRNRGWEGYDERSRYRLSVENPQDPDVDIGGSAYNIRKVQRAFQHAYDTLIFNNSN 331
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A078B620_STYLE9.960e-630.00PAP-associated domain-containing protein n=1 Tax=S... [more]
J9I2X3_9SPIT1.880e-533.00Poly(A) RNA polymerase putative n=1 Tax=Oxytricha ... [more]
A0A8J8T226_HALGN1.970e-530.30Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104463contigM-pyrifera_M_contig104463:164..463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_006750.1
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.819349-CDS-M-pyrifera_M_contig104463:163..4631622815551.819349-CDS-M-pyrifera_M_contig104463:163..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104463 164..463 +
1692277460.1414871-CDS-M-pyrifera_M_contig104463:163..4631692277460.1414871-CDS-M-pyrifera_M_contig104463:163..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104463 164..463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104463.960.1prot_M-pyrifera_M_contig104463.960.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104463 164..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104463.960.1

>prot_M-pyrifera_M_contig104463.960.1 ID=prot_M-pyrifera_M_contig104463.960.1|Name=mRNA_M-pyrifera_M_contig104463.960.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
GGLDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQDKGSMGK
AFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN
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mRNA from alignment at M-pyrifera_M_contig104463:164..463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104463.960.1 ID=mRNA_M-pyrifera_M_contig104463.960.1|Name=mRNA_M-pyrifera_M_contig104463.960.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig104463:164..463+ (Macrocystis pyrifera P11B4 male)
GGGGGTTTGGATCGTGTGAGTGGTTTGAATTTGGGATTTTTGCTGTATCT
TTTTTTCGACTATTTTGGTCGTCGTCACAACTATCACCGCGTTGGTCTTT
CTCTGTCTCCTCAGGAGCCTGCAATGCAGGACAAGGGATCGATGGGGAAG
GCATTTCGGAATGTGGAGGATCCTGGTAGTTTGGCGTTCAAGTCTCCTTT
GGAGGCTGACGCGAATTTGGGGGGAGCCGCCTTTCAGATCCAGAGGGTGA
TGCGGGCGTGGCAACTTGCGGCAGAATCCTTGGATTTCGGCATCGACAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104463:164..463+

>mRNA_M-pyrifera_M_contig104463.960.1 ID=mRNA_M-pyrifera_M_contig104463.960.1|Name=mRNA_M-pyrifera_M_contig104463.960.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig104463:164..463+ (Macrocystis pyrifera P11B4 male)
GGGGGTTTGGATCGTGTGAGTGGTTTGAATTTGGGATTTTTGCTGTATCT
TTTTTTCGACTATTTTGGTCGTCGTCACAACTATCACCGCGTTGGTCTTT
CTCTGTCTCCTCAGGAGCCTGCAATGCAGGACAAGGGATCGATGGGGAAG
GCATTTCGGAATGTGGAGGATCCTGGTAGTTTGGCGTTCAAGTCTCCTTT
GGAGGCTGACGCGAATTTGGGGGGAGCCGCCTTTCAGATCCAGAGGGTGA
TGCGGGCGTGGCAACTTGCGGCAGAATCCTTGGATTTCGGCATCGACAAT
GGGGGTTTGGATCGTGTGAGTGGTTTGAATTTGGGATTTTTGCTGTATCT
TTTTTTCGACTATTTTGGTCGTCGTCACAACTATCACCGCGTTGGTCTTT
CTCTGTCTCCTCAGGAGCCTGCAATGCAGGACAAGGGATCGATGGGGAAG
GCATTTCGGAATGTGGAGGATCCTGGTAGTTTGGCGTTCAAGTCTCCTTT
GGAGGCTGACGCGAATTTGGGGGGAGCCGCCTTTCAGATCCAGAGGGTGA
TGCGGGCGTGGCAACTTGCGGCAGAATCCTTGGATTTCGGCATCGACAAT
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