prot_M-pyrifera_M_contig104463.960.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig104463.960.1
Unique Nameprot_M-pyrifera_M_contig104463.960.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length100
Homology
BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Match: A0A078B620_STYLE (PAP-associated domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B620_STYLE)

HSP 1 Score: 51.2 bits (121), Expect = 9.960e-6
Identity = 30/100 (30.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:    1 GGLDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQDKGSMGKAFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN 100
            GG D++    LG  L  F + +G + NY  +G+S+   +     K   G    +      L+ ++P +++ ++GG+AF I+RV RA+Q A ++L F   N
Sbjct:   42 GGTDKID---LGRHLIDFLELYGTKFNYEDIGISIR-DDGFYYQKSKRGWQGYDERTRSKLSVENPQDSEVDIGGSAFNIKRVQRAFQHAYDTLIFNNSN 137          
BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Match: J9I2X3_9SPIT (Poly(A) RNA polymerase putative n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I2X3_9SPIT)

HSP 1 Score: 51.6 bits (122), Expect = 1.880e-5
Identity = 33/100 (33.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:    3 LDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQD--KGSMGKAFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN 100
            L   + L+LG  L  FF  +G   NY  VG+S+       Q   +G  G+  R+ E    L+ ++P + + ++GG+AF I+RV RA+Q A ++L +   N
Sbjct:  195 LGNTNNLDLGKQLLDFFKLYGTEFNYQHVGISIRDGGFYYQKYKRGWEGRDERSYE---RLSVENPQDPEVDIGGSAFNIKRVQRAFQHAYDTLIYNNSN 291          
BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Match: A0A8J8T226_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T226_HALGN)

HSP 1 Score: 51.6 bits (122), Expect = 1.970e-5
Identity = 30/99 (30.30%), Postives = 55/99 (55.56%), Query Frame = 0
Query:    2 GLDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQDKGSMGKAFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN 100
            G  +   ++LG  L  FF+++G + NY  VG+S+  +E     K + G    +      L+ ++P + D ++GG+A+ I++V RA+Q A ++L F   N
Sbjct:  234 GGGKTEKIDLGKHLIDFFEFYGTKFNYEDVGISIR-EEGFYFPKRNRGWEGYDERSRYRLSVENPQDPDVDIGGSAYNIRKVQRAFQHAYDTLIFNNSN 331          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104463.960.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A078B620_STYLE9.960e-630.00PAP-associated domain-containing protein n=1 Tax=S... [more]
J9I2X3_9SPIT1.880e-533.00Poly(A) RNA polymerase putative n=1 Tax=Oxytricha ... [more]
A0A8J8T226_HALGN1.970e-530.30Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1410.10coord: 5..99
e-value: 4.0E-12
score: 48.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availableSUPERFAMILY81631PAP/OAS1 substrate-binding domaincoord: 6..94
IPR002058PAP/25A-associatedPFAMPF03828PAP_assoccoord: 10..68
e-value: 4.4E-7
score: 30.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104463contigM-pyrifera_M_contig104463:164..463 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104463.960.1mRNA_M-pyrifera_M_contig104463.960.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig104463 164..463 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig104463.960.1 ID=prot_M-pyrifera_M_contig104463.960.1|Name=mRNA_M-pyrifera_M_contig104463.960.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
GGLDRVSGLNLGFLLYLFFDYFGRRHNYHRVGLSLSPQEPAMQDKGSMGK
AFRNVEDPGSLAFKSPLEADANLGGAAFQIQRVMRAWQLAAESLDFGIDN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002058PAP_assoc