mRNA_M-pyrifera_M_contig104399.943.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104399.943.1
Unique NamemRNA_M-pyrifera_M_contig104399.943.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5K2D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.450e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRL 168
            H+TL+ WT +LLEDYPAYLA R+GGRTGNY +CV ALR LAP+  ATG+TNY  L
Sbjct:  570 HQTLKLWTPFLLEDYPAYLALRMGGRTGNYPMCVMALRKLAPMVGATGKTNYVTL 624
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5KQU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.660e-13
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            HKT   W Q+LL DYPAY+AFR   RTGN+ L + AL  +APIF +TG+  YQ LV
Sbjct:  300 HKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLDALHRIAPIFYSTGKDEYQFLV 355
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.800e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            HKT   W Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV
Sbjct:   40 HKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLV 95
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.830e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            HKT   W Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV
Sbjct: 1039 HKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLV 1094
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5LD09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD09_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.050e-12
Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            HKT   W Q+LL DYPAY+AF    RTGN+ L +  LR +APIF   G   YQ LV
Sbjct:   40 HKTFAVWEQFLLHDYPAYIAFHTALRTGNFSLRLEGLRRIAPIFFIAGEDKYQFLV 95
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5L1K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.190e-12
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            HK    W Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV
Sbjct:  365 HKAFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLV 420
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5K3J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.690e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 KHKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            +HKT   W Q+LL D+PAY+AFR   RTG++ L + ALR +APIF  TG+  YQ LV
Sbjct:  321 EHKTFALWQQFLLHDFPAYMAFRTALRTGDFMLRLDALRRIAPIFYITGKDRYQFLV 377
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: D7FIA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.990e-11
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    7 KTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            KT   W Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV
Sbjct:  281 KTFAVWKQFLLHDYPAYIAFRTALRTGNFGLRLEGLRRIAPIFFITGKDKYQFLV 335
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BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5JK56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK56_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.730e-11
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            HKT   W Q+LL DYPAY+A R   RTGN+ L + ALR +AP F  TG+  YQ LV
Sbjct:  102 HKTFAVWKQFLLHDYPAYIASRTALRTGNFRLRLDALRRIAPNFCITGKDKYQFLV 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Match: A0A6H5K245_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K245_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.050e-11
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 HKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGRTNYQRLV 171
            HKT   W Q+LL DYPAY+AFR   RTGN+ L +  LR +  IF+ TG+  YQ LV
Sbjct:   29 HKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLVGLRRITSIFI-TGKDKYQFLV 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104399.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K2D4_9PHAE2.450e-1869.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQU3_9PHAE8.660e-1357.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG2_9PHAE8.800e-1357.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE8.830e-1357.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD09_9PHAE4.050e-1253.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1K3_9PHAE4.190e-1255.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J0_9PHAE5.690e-1254.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIA9_ECTSI1.990e-1156.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK56_9PHAE3.730e-1155.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K245_9PHAE5.050e-1153.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104399contigM-pyrifera_M_contig104399:110..280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog2880.D7FIA9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2D5KK@1,2SYVY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.9264264-CDS-M-pyrifera_M_contig104399:109..2801622815550.9264264-CDS-M-pyrifera_M_contig104399:109..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104399 110..280 +
1692277459.7609298-CDS-M-pyrifera_M_contig104399:109..2801692277459.7609298-CDS-M-pyrifera_M_contig104399:109..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104399 110..280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104399.943.1prot_M-pyrifera_M_contig104399.943.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104399 110..280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104399.943.1

>prot_M-pyrifera_M_contig104399.943.1 ID=prot_M-pyrifera_M_contig104399.943.1|Name=mRNA_M-pyrifera_M_contig104399.943.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
KHKTLRFWTQYLLEDYPAYLAFRVGGRTGNYELCVAALRVLAPIFVATGR
TNYQRLV
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mRNA from alignment at M-pyrifera_M_contig104399:110..280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104399.943.1 ID=mRNA_M-pyrifera_M_contig104399.943.1|Name=mRNA_M-pyrifera_M_contig104399.943.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig104399:110..280+ (Macrocystis pyrifera P11B4 male)
AAGCACAAGACGTTGAGATTTTGGACTCAATACTTGTTGGAGGATTACCC
GGCTTACCTCGCGTTTCGAGTAGGTGGTCGCACGGGAAACTACGAGCTAT
GCGTGGCCGCGCTGCGCGTGTTGGCGCCCATTTTCGTGGCCACGGGCAGG
ACCAACTACCAGCGCCTGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104399:110..280+

>mRNA_M-pyrifera_M_contig104399.943.1 ID=mRNA_M-pyrifera_M_contig104399.943.1|Name=mRNA_M-pyrifera_M_contig104399.943.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig104399:110..280+ (Macrocystis pyrifera P11B4 male)
AAGCACAAGACGTTGAGATTTTGGACTCAATACTTGTTGGAGGATTACCC
GGCTTACCTCGCGTTTCGAGTAGGTGGTCGCACGGGAAACTACGAGCTAT
GCGTGGCCGCGCTGCGCGTGTTGGCGCCCATTTTCGTGGCCACGGGCAGG
ACCAACTACCAGCGCCTGGTCAAGCACAAGACGTTGAGATTTTGGACTCA
ATACTTGTTGGAGGATTACCCGGCTTACCTCGCGTTTCGAGTAGGTGGTC
GCACGGGAAACTACGAGCTATGCGTGGCCGCGCTGCGCGTGTTGGCGCCC
ATTTTCGTGGCCACGGGCAGGACCAACTACCAGCGCCTGGTC
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