mRNA_M-pyrifera_M_contig104321.917.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104321.917.1
Unique NamemRNA_M-pyrifera_M_contig104321.917.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104321.917.1 vs. uniprot
Match: A0A7I8VMV0_9ANNE (DgyrCDS5529 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VMV0_9ANNE)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   97 NLLYPAEDRVSRRLVYKCNRCGRHEPAQSPCVHVNRIK 210
            N+LYP ED+V++ L+Y C  C   EPA +PC++VN+I+
Sbjct:   62 NMLYPKEDKVTQTLLYACRNCEYQEPADNPCIYVNKIE 99
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BLAST of mRNA_M-pyrifera_M_contig104321.917.1 vs. uniprot
Match: A0A0R3U9D8_MESCO (DNA-directed RNA polymerase subunit n=4 Tax=Cyclophyllidea TaxID=6201 RepID=A0A0R3U9D8_MESCO)

HSP 1 Score: 51.2 bits (121), Expect = 1.820e-6
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   97 NLLYPAEDRVSRRLVYKCNRCGRHEPAQSPCVHVNRIK 210
            N+LYP ED+ ++RL+Y C  C   +PA +PCV+VNR++
Sbjct:   20 NMLYPKEDKRNKRLMYACRNCEYMQPADNPCVYVNRLE 57
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BLAST of mRNA_M-pyrifera_M_contig104321.917.1 vs. uniprot
Match: A0A068XWH5_ECHMU (RNA polymerase II 15 kDa subunit n=2 Tax=Echinococcus TaxID=6209 RepID=A0A068XWH5_ECHMU)

HSP 1 Score: 49.7 bits (117), Expect = 8.580e-6
Identity = 18/38 (47.37%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   97 NLLYPAEDRVSRRLVYKCNRCGRHEPAQSPCVHVNRIK 210
            N+LYP ED+  +RL+Y C  C   +PA +PC++VNR++
Sbjct:   20 NMLYPKEDKRHKRLMYACRNCEFMQPADNPCIYVNRLE 57
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BLAST of mRNA_M-pyrifera_M_contig104321.917.1 vs. uniprot
Match: A0A4P9Y0I7_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y0I7_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 2.400e-5
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   85 RYSQNLLYPAEDRVSRRLVYKCNRCGRHEPAQSPCVHVNRIK 210
            R   NLLYP ED V+R+L Y C  C   E A SPCV+ + +K
Sbjct:    8 RNCNNLLYPEEDTVARKLFYGCRNCPYRETAASPCVYKHEVK 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104321.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7I8VMV0_9ANNE1.310e-650.00DgyrCDS5529 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A0R3U9D8_MESCO1.820e-650.00DNA-directed RNA polymerase subunit n=4 Tax=Cyclop... [more]
A0A068XWH5_ECHMU8.580e-647.37RNA polymerase II 15 kDa subunit n=2 Tax=Echinococ... [more]
A0A4P9Y0I7_9FUNG2.400e-550.00DNA-directed RNA polymerase subunit n=1 Tax=Piptoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104321contigM-pyrifera_M_contig104321:327..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.5372515-CDS-M-pyrifera_M_contig104321:326..5361622815549.5372515-CDS-M-pyrifera_M_contig104321:326..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104321 327..536 +
1692277459.1874793-CDS-M-pyrifera_M_contig104321:326..5361692277459.1874793-CDS-M-pyrifera_M_contig104321:326..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104321 327..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104321.917.1prot_M-pyrifera_M_contig104321.917.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104321 327..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104321.917.1

>prot_M-pyrifera_M_contig104321.917.1 ID=prot_M-pyrifera_M_contig104321.917.1|Name=mRNA_M-pyrifera_M_contig104321.917.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MKNPPFSSAANGEENRLHSAACPLLHTSRYSQNLLYPAEDRVSRRLVYKC
NRCGRHEPAQSPCVHVNRIK
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mRNA from alignment at M-pyrifera_M_contig104321:327..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104321.917.1 ID=mRNA_M-pyrifera_M_contig104321.917.1|Name=mRNA_M-pyrifera_M_contig104321.917.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig104321:327..536+ (Macrocystis pyrifera P11B4 male)
ATGAAGAACCCGCCCTTCAGTTCTGCAGCGAATGGTGAGGAGAATCGTCT
CCACAGCGCAGCCTGCCCACTCTTACACACCTCGCGTTACAGCCAGAACC
TGTTGTACCCGGCTGAAGACCGCGTGTCTCGGCGCCTTGTGTACAAGTGC
AACCGCTGTGGGCGACACGAGCCTGCGCAATCTCCTTGCGTTCACGTCAA
CCGCATCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104321:327..536+

>mRNA_M-pyrifera_M_contig104321.917.1 ID=mRNA_M-pyrifera_M_contig104321.917.1|Name=mRNA_M-pyrifera_M_contig104321.917.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig104321:327..536+ (Macrocystis pyrifera P11B4 male)
ATGAAGAACCCGCCCTTCAGTTCTGCAGCGAATGGTGAGGAGAATCGTCT
CCACAGCGCAGCCTGCCCACTCTTACACACCTCGCGTTACAGCCAGAACC
TGTTGTACCCGGCTGAAGACCGCGTGTCTCGGCGCCTTGTGTACAAGTGC
AACCGCTGTGGGCGACACGAGCCTGCGCAATCTCCTTGCGTTCACGTCAA
CCGCATCAAGATGAAGAACCCGCCCTTCAGTTCTGCAGCGAATGGTGAGG
AGAATCGTCTCCACAGCGCAGCCTGCCCACTCTTACACACCTCGCGTTAC
AGCCAGAACCTGTTGTACCCGGCTGAAGACCGCGTGTCTCGGCGCCTTGT
GTACAAGTGCAACCGCTGTGGGCGACACGAGCCTGCGCAATCTCCTTGCG
TTCACGTCAACCGCATCAAG
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