mRNA_M-pyrifera_M_contig104317.916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104317.916.1
Unique NamemRNA_M-pyrifera_M_contig104317.916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A2E6GPB4_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GPB4_9PROT)

HSP 1 Score: 102 bits (255), Expect = 1.050e-21
Identity = 76/177 (42.94%), Postives = 94/177 (53.11%), Query Frame = 1
Query:  109 GTTLDGV--TINGDVFSANSISNTXXXXXXXXGTWTLASSGALTDLVFTGAQTIGGNATIVMGDHTNNRIVNNNVVTT--IGANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTGGLHITGATVFANNTAIDIDAGSALLVDGS--SRINGGLINLG 621
            G  LD V  T   ++ S NS            GT ++ S+G  TDL F G QT+ GN  IVM D   NRI  ++   T  IGAN  IRGAGQ+G N GG  N GTI  +G   L +D  ALGF  N IL A+GTGG+   GA  F NNT I+  A S L +  S  + + G L  +G
Sbjct:  443 GALLDNVRLTSGSNLVSGNSHDWRFQNGFVNDGTISMNSAGGSTDLEFIGTQTLSGNGEIVMSDSNQNRIFADDAADTLTIGANQVIRGAGQIGLNLGGTINNGTIRQQGTVNLHLDPGALGFTQNNILRAEGTGGISF-GAGTFTNNTTIEALADSNLTITSSLTTIVGGDLTTIG 618          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A011QPC2_9PROT (Uncharacterized protein n=1 Tax=Candidatus Accumulibacter sp. BA-92 TaxID=1454003 RepID=A0A011QPC2_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 3.550e-17
Identity = 76/192 (39.58%), Postives = 101/192 (52.60%), Query Frame = 1
Query:    1 NTAIDIDAGSALLVDGSSRINGGLINLGAGVEADLRGTTLDGVTIN----GDVF-----SANSISNTXXXXXXXX------GTWT------LASSGALTDLVFTGAQTIGGNATIVMGDHTNNRIVNNN----VVTTIGANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTG 501
            NT I   AG  L + GS  IN G +    G    + G+T+ G T+     G VF     + +S+SNT              GT+T      LAS+  +TDL   G  T+ G  T+ M +  NNRI  ++     V T  ++ TI+GAGQLG N  G DNQG ILAEG + L+IDV+A G +N+GIL A GTG
Sbjct:  205 NTGILRAAGGQLTIQGSDLINTGGVIDAVGTNVVITGSTVTGGTLQSSSGGKVFVQGSSNLSSVSNTGQVEIATAQTGLLTGTFTNTGNLQLASANHVTDLTLNGDVTLTGAGTLTMSNSANNRIYGHSGSGSEVLTNASDHTIQGAGQLGVNRTGLDNQGLILAEGSAGLLIDVSAAGMSNSGILRA-GTG 395          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A2G6MNU0_9DELT (Uncharacterized protein n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A2G6MNU0_9DELT)

HSP 1 Score: 73.9 bits (180), Expect = 3.040e-12
Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  238 LVFTGAQTIGGNATIVMGDHTNNRIVNNNVVTTIG--ANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNA-LGFANNGILNAQGTGGL-HITGATVFANNTAID----IDAGSALLVDGSSRINGGLIN 615
            ++F G QT+ G   I++ D   N I   +   TI   A+ TIRGAGQL +N G   NQG I+AEG +AL ID +A LGF N G+++AQGTGGL HI      A  T ++    + +    L+ G      G++N
Sbjct:    1 MLFNGDQTLSGTGQIILSDKVTNLISMASYGQTITQEADHTIRGAGQLLSNRGNMVNQGKIIAEGTAALTIDPHANLGFENQGLVSAQGTGGLTHIGSYLQTAGETVVNSLMTVKSNGDFLLQGGGLSGNGVLN 134          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: UPI00145E6D19 (choice-of-anchor D domain-containing protein n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=UPI00145E6D19)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-11
Identity = 55/110 (50.00%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  211 LASSGALTDLVFTGAQTIGGNATIVMGDHTNNRIVNNNVVTT-IGANT---TIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTGGLHITGATV 528
            LAS G  T+L   G  T+ G  T+ M ++  NRIV ++  TT I  N    TI+GAGQLGAN  G DNQG ILA G + LVIDV+  G  N+G L A GTG L I  +TV
Sbjct:   76 LASVGNQTNLRLNGDVTLTGPGTLTMSNNIQNRIVGHSGSTTEILTNALGHTIQGAGQLGANQMGLDNQGLILATGSAGLVIDVSPAGMTNSGTLRA-GTGVLTIQNSTV 184          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A011NZD2_9PROT (PEP-CTERM domain-containing protein n=1 Tax=Candidatus Accumulibacter sp. BA-92 TaxID=1454003 RepID=A0A011NZD2_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 1.800e-11
Identity = 61/141 (43.26%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  211 LASSGALTDLVFTGAQTIGGNATIVMGDHTNNRIVNNN----VVTTIGANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNA---LGFANNGILNAQGTGGLHITGATVFANNTAIDIDA-GSALLVDGSSRINGGL 609
            LAS+  +TDL   G  T+ G  T+ M + TNNRI  N+     V T  +  TI+GAGQLG N  G DNQG I+A   + L ID++    +  +N GIL A G G L I G  +   NT   IDA GS +L+ GS+  NG L
Sbjct:  124 LASANHVTDLTLNGDVTLTGAGTLSMSNSTNNRIYGNSGSGSEVLTNASGHTIQGAGQLGVNRTGLDNQGLIVANQSNELTIDLSGGAGITRSNTGILRAAG-GQLTIQGTNL--TNTGGVIDAVGSNVLITGSTITNGTL 261          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A7Y3UAN1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y3UAN1_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-11
Identity = 67/209 (32.06%), Postives = 105/209 (50.24%), Query Frame = 1
Query:   22 AGSALLVDGSSRINGGLINLGAGVEADLRGT---TLDGVTINGDVFSANSISNTXXXXXXXXGTWTLASSGALTDLVFTG-AQTIGGNATIVMGDHTNNRIVNNNVVTTI--GANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTGGLHITGATVFANNTAIDIDAGSALLVDG-------SSRINGGL 609
            AGS + + GS+ I GG++         + G+   +L  +T+NG     N  S          GT T+ S+G+ T L       T+ G+  +V+    ++RI +N     +  GA+ TIRG G +GAN+ G  N G+I+A+ G  L IDVN L F N G+L++     + I+  T   + T I +D G+AL  +G        +R+NG L
Sbjct:  790 AGSTVTLSGSADIRGGVLATVDDGTFQVPGSQTPSLTDLTLNGTYTVNNGASTYALGTIVNNGTMTIDSTGSYTYLYANSDIVTLDGSGEVVLPG-VSSRIQSNGTTRDLVNGASHTIRGRGNIGANNMGLTNLGSIVADTGETLTIDVNTLDFDNQGLLHSTAGSTVAISSGTFQTSGTVI-VDEGAALTRNGPYPQSAGETRVNGSL 996          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: UPI00145E7C13 (hypothetical protein n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=UPI00145E7C13)

HSP 1 Score: 69.7 bits (169), Expect = 2.500e-10
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  211 LASSGALTDLVFTGAQTIGGNATIVMGDHTNNRIVNNNVVTT-IGANT---TIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTGGLHITGATV 528
            LAS G  T+L   G  T+ G  T+ M ++  N++  ++  TT I  N    TI+GAGQLGAN  G DNQG ILA G + LVIDV+  G  N+G L A GTG L I  +TV
Sbjct:  476 LASVGNQTNLRLNGDVTLTGPGTLTMSNNIQNQVFGHSGSTTEILTNALGHTIQGAGQLGANQMGLDNQGLILATGSAGLVIDVSPAGMTNSGTLRA-GTGVLTIQNSTV 584          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A527E5D5_9HYPH (Adhesin n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A527E5D5_9HYPH)

HSP 1 Score: 66.6 bits (161), Expect = 3.070e-9
Identity = 62/185 (33.51%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   70 LINLGAGVEADLRGTTLDGVTINGDVFSANSISNTXXXXXXXXG-----TWTLASSGALTDLVFTGAQTI----------GGNATIVMGDHTNNRIVNNNV-VTTIGANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTGGLHITGATVFANNTAIDIDAGSALL 576
            +I LG G    L G     +T +  VF    + N         G     + T+ +SG ++ L  TG +T+           G   I++ D T N I      VT +  + TI GAGQLG      DNQGTI+A G +ALVID       N+GIL A G+GGL ITG    AN+  +  + G  ++
Sbjct:  784 VIALGDGQSITLDGVHSGALTASNFVFDQTPVVNNPGTMTIGDGALLPLSGTINNSGVIS-LDSTGGETLLQIIQHGVTLQGGGQILLSDSTANVISGTGPDVTLVNVDNTISGAGQLGGGMLSLDNQGTIIASGANALVIDTGGSVVTNSGILEATGSGGLTITGG--LANSGMLLANGGDIVI 965          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A850E8A3_9BRAD (Tandem-95 repeat protein n=1 Tax=Tardiphaga robiniae TaxID=943830 RepID=A0A850E8A3_9BRAD)

HSP 1 Score: 66.6 bits (161), Expect = 3.430e-9
Identity = 61/172 (35.47%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  139 GDVFSANSISNTXXXXXXXXGTWTLASSGALT--DLVFTGAQTIGGNATIVMGDHTNNRIVNN-NVVTTIGANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTGGLHI-----TGATVFANNTAIDID-----AGSALLVDGSSRINGGLIN 615
            GD+  +N             G+  LAS+G  T  ++V  G   +GG  T+ + D ++N I  + + VT    + TI GAGQLG       N+GTI+A+G +ALVID       N+G L A GTGGL++         V+AN   +D D     +GSALL   +S   GG  N
Sbjct: 6091 GDIVLSNGALMPFSGVLDNTGSIHLASTGGETAFEIVQRGLTLLGG-GTVTLSDSSSNVIFGSADDVTLTNVDNTISGAGQLGDGHLTLVNEGTIVADGSNALVIDTGDNAVINSGTLEATGTGGLNVHSDVVNNGLVWANGGDLDFDGNVTGSGSALLSGHASIELGGAFN 6261          
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Match: A0A2W7BYR8_9HYPH (Uncharacterized protein (Fragment) n=2 Tax=Mesorhizobium kowhaii TaxID=1300272 RepID=A0A2W7BYR8_9HYPH)

HSP 1 Score: 65.5 bits (158), Expect = 7.640e-9
Identity = 69/207 (33.33%), Postives = 88/207 (42.51%), Query Frame = 1
Query:    1 NTAIDIDAGSALLVDGSSRINGGLINLGAGVEADLRGTTLDGVTINGDVFS-ANSISNTXXXXXXXXGTWTLASSGALTDL-VFTGAQTIGGNATIVMGDHTNNRIVNNNV-VTTIGANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDVNALGFANNGILNAQGTGGLHITGAT-----VFANNTAIDIDAGSALLVDGSSRI 597
            N  + + AG  + V G S    G IN     E          VT NG   S A+             GT  L  +GA T L V     T+ G   +V+ D   N I      VT    + TI GAGQLG      +NQGTI+A G  ALVID      +N+G   A G+GGL I GA      ++AN    D+  G  +  DG + I
Sbjct:  792 NALVTVGAGETITVQGVSASELGAINFLFNQEP---------VTHNGGTMSIADGAIMPLGGAVDNTGTIALNGAGATTQLEVIASGITLHGGGQVVLSDSDANVISGTAADVTLTNVDNTISGAGQLGGGLLSLNNQGTIIATGTHALVIDTGGSTVSNSGTFEATGSGGLAINGAVANSGLIWANGG--DVTIGGQVTGDGDAII 987          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104317.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6GPB4_9PROT1.050e-2142.94Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A011QPC2_9PROT3.550e-1739.58Uncharacterized protein n=1 Tax=Candidatus Accumul... [more]
A0A2G6MNU0_9DELT3.040e-1240.30Uncharacterized protein n=1 Tax=Desulfobacterales ... [more]
UPI00145E6D191.370e-1150.00choice-of-anchor D domain-containing protein n=1 T... [more]
A0A011NZD2_9PROT1.800e-1143.26PEP-CTERM domain-containing protein n=1 Tax=Candid... [more]
A0A7Y3UAN1_9BACT1.840e-1132.06Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI00145E7C132.500e-1047.27hypothetical protein n=1 Tax=Candidatus Accumuliba... [more]
A0A527E5D5_9HYPH3.070e-933.51Adhesin n=1 Tax=Mesorhizobium sp. TaxID=1871066 Re... [more]
A0A850E8A3_9BRAD3.430e-935.47Tandem-95 repeat protein n=1 Tax=Tardiphaga robini... [more]
A0A2W7BYR8_9HYPH7.640e-933.33Uncharacterized protein (Fragment) n=2 Tax=Mesorhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104317contigM-pyrifera_M_contig104317:12..641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.9
Seed ortholog evalue7.4e-19
Seed eggNOG ortholog237368.SCABRO_02587
Preferred namefhaB
KEGG koko:K15125
KEGG Pathwayko05133,map05133
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0009986,GO:0044464
EggNOG free text desc.domain, Protein
EggNOG OGsCOG3210@1,COG3210@2
COG Functional cat.U
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.4851396-CDS-M-pyrifera_M_contig104317:11..6411622815549.4851396-CDS-M-pyrifera_M_contig104317:11..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104317 12..641 +
1692277459.1737905-CDS-M-pyrifera_M_contig104317:11..6411692277459.1737905-CDS-M-pyrifera_M_contig104317:11..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104317 12..641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104317.916.1prot_M-pyrifera_M_contig104317.916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104317 12..641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104317.916.1

>prot_M-pyrifera_M_contig104317.916.1 ID=prot_M-pyrifera_M_contig104317.916.1|Name=mRNA_M-pyrifera_M_contig104317.916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
NTAIDIDAGSALLVDGSSRINGGLINLGAGVEADLRGTTLDGVTINGDVF
SANSISNTILNGLTLNGTWTLASSGALTDLVFTGAQTIGGNATIVMGDHT
NNRIVNNNVVTTIGANTTIRGAGQLGANSGGFDNQGTILAEGGSALVIDV
NALGFANNGILNAQGTGGLHITGATVFANNTAIDIDAGSALLVDGSSRIN
GGLINLGAGV
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mRNA from alignment at M-pyrifera_M_contig104317:12..641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104317.916.1 ID=mRNA_M-pyrifera_M_contig104317.916.1|Name=mRNA_M-pyrifera_M_contig104317.916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig104317:12..641+ (Macrocystis pyrifera P11B4 male)
AACACCGCGATCGACATCGATGCCGGCTCCGCGCTGCTCGTCGACGGCAG CTCGCGGATCAACGGCGGACTCATCAACCTCGGCGCCGGAGTCGAGGCGG ATCTCCGCGGCACGACGCTCGACGGGGTCACGATCAATGGTGACGTGTTC TCCGCGAACAGTATCAGCAACACGATCCTGAACGGCCTGACCCTGAACGG CACGTGGACGCTCGCCAGCTCCGGTGCACTGACGGATCTGGTTTTCACCG GTGCGCAAACGATCGGCGGCAACGCGACGATCGTCATGGGTGATCACACG AACAACCGGATCGTGAACAATAACGTCGTCACGACGATCGGCGCGAACAC CACGATCCGCGGCGCCGGCCAGCTCGGCGCGAACTCGGGCGGTTTCGATA ACCAGGGCACGATCCTCGCCGAGGGCGGCAGCGCGCTCGTGATTGATGTG AACGCGCTCGGGTTTGCGAACAACGGGATCCTGAACGCGCAAGGTACCGG CGGCCTGCACATCACCGGCGCCACCGTCTTCGCGAACAACACCGCGATCG ACATCGATGCCGGCTCCGCGCTGCTCGTCGACGGCAGCTCGCGCATCAAC GGCGGACTCATCAACCTCGGCGCCGGAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104317:12..641+

>mRNA_M-pyrifera_M_contig104317.916.1 ID=mRNA_M-pyrifera_M_contig104317.916.1|Name=mRNA_M-pyrifera_M_contig104317.916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig104317:12..641+ (Macrocystis pyrifera P11B4 male)
AACACCGCGATCGACATCGATGCCGGCTCCGCGCTGCTCGTCGACGGCAG
CTCGCGGATCAACGGCGGACTCATCAACCTCGGCGCCGGAGTCGAGGCGG
ATCTCCGCGGCACGACGCTCGACGGGGTCACGATCAATGGTGACGTGTTC
TCCGCGAACAGTATCAGCAACACGATCCTGAACGGCCTGACCCTGAACGG
CACGTGGACGCTCGCCAGCTCCGGTGCACTGACGGATCTGGTTTTCACCG
GTGCGCAAACGATCGGCGGCAACGCGACGATCGTCATGGGTGATCACACG
AACAACCGGATCGTGAACAATAACGTCGTCACGACGATCGGCGCGAACAC
CACGATCCGCGGCGCCGGCCAGCTCGGCGCGAACTCGGGCGGTTTCGATA
ACCAGGGCACGATCCTCGCCGAGGGCGGCAGCGCGCTCGTGATTGATGTG
AACGCGCTCGGGTTTGCGAACAACGGGATCCTGAACGCGCAAGGTACCGG
CGGCCTGCACATCACCGGCGCCACCGTCTTCGCGAACAACACCGCGATCG
ACATCGATGCCGGCTCCGCGCTGCTCGTCGACGGCAGCTCGCGCATCAAC
GGCGGACTCATCAACCTCGGCGCCGGAGTCAACACCGCGATCGACATCGA
TGCCGGCTCCGCGCTGCTCGTCGACGGCAGCTCGCGGATCAACGGCGGAC
TCATCAACCTCGGCGCCGGAGTCGAGGCGGATCTCCGCGGCACGACGCTC
GACGGGGTCACGATCAATGGTGACGTGTTCTCCGCGAACAGTATCAGCAA
CACGATCCTGAACGGCCTGACCCTGAACGGCACGTGGACGCTCGCCAGCT
CCGGTGCACTGACGGATCTGGTTTTCACCGGTGCGCAAACGATCGGCGGC
AACGCGACGATCGTCATGGGTGATCACACGAACAACCGGATCGTGAACAA
TAACGTCGTCACGACGATCGGCGCGAACACCACGATCCGCGGCGCCGGCC
AGCTCGGCGCGAACTCGGGCGGTTTCGATAACCAGGGCACGATCCTCGCC
GAGGGCGGCAGCGCGCTCGTGATTGATGTGAACGCGCTCGGGTTTGCGAA
CAACGGGATCCTGAACGCGCAAGGTACCGGCGGCCTGCACATCACCGGCG
CCACCGTCTTCGCGAACAACACCGCGATCGACATCGATGCCGGCTCCGCG
CTGCTCGTCGACGGCAGCTCGCGCATCAACGGCGGACTCATCAACCTCGG
CGCCGGAGTC
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