mRNA_M-pyrifera_M_contig103967.842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103967.842.1
Unique NamemRNA_M-pyrifera_M_contig103967.842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103967.842.1 vs. uniprot
Match: A0A1Y1HXU4_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXU4_KLENI)

HSP 1 Score: 83.2 bits (204), Expect = 5.230e-15
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:  310 RCTTSSEPGRWLGILDKTTPCEPPVCSGDRVQSMVTAQSWMGAIYDYVWVPYNCYFHLYSPNDISYCAREAGISWIHVMGDSLSREMEAYLASV 591
            RC    +PGRWL  L     C PP CSG+R  + V  + W G    +V+ P+ C +H++S  DI+ CA E G+ W+HV+GDS  RE+ + L S+
Sbjct:  893 RCVEGDKPGRWLN-LPVAENCRPPFCSGNRSATNVVKE-WNGNDIPWVYAPFGCQYHMFSLGDITTCAGETGVKWVHVVGDSTVREIPSTLFSM 984
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103967.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y1HXU4_KLENI5.230e-1541.49Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103967contigM-pyrifera_M_contig103967:3..608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.448525-CDS-M-pyrifera_M_contig103967:2..6081622815545.448525-CDS-M-pyrifera_M_contig103967:2..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103967 3..608 +
1692277457.3712087-CDS-M-pyrifera_M_contig103967:2..6081692277457.3712087-CDS-M-pyrifera_M_contig103967:2..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103967 3..608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103967.842.1prot_M-pyrifera_M_contig103967.842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103967 3..608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103967.842.1

>prot_M-pyrifera_M_contig103967.842.1 ID=prot_M-pyrifera_M_contig103967.842.1|Name=mRNA_M-pyrifera_M_contig103967.842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
LLSHDVIQSAPVSSHWNREWGGYELDVTIRDVGMYKLRVTLNEIWGSSEP
LSSEPAPICVSSHLRHEFADCDLDRSLVHGSGVSVYVRQVQGEVPIFHRS
HPKRCTTSSEPGRWLGILDKTTPCEPPVCSGDRVQSMVTAQSWMGAIYDY
VWVPYNCYFHLYSPNDISYCAREAGISWIHVMGDSLSREMEAYLASVFHV
ED
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mRNA from alignment at M-pyrifera_M_contig103967:3..608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103967.842.1 ID=mRNA_M-pyrifera_M_contig103967.842.1|Name=mRNA_M-pyrifera_M_contig103967.842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig103967:3..608+ (Macrocystis pyrifera P11B4 male)
CTATTGAGCCATGATGTTATTCAAAGCGCACCCGTCTCTTCCCACTGGAA
TAGAGAATGGGGTGGCTACGAACTGGATGTGACTATCCGCGATGTGGGTA
TGTACAAACTGCGTGTTACGCTCAATGAGATTTGGGGTAGCTCTGAACCG
CTCTCCTCTGAGCCAGCACCTATTTGCGTCAGTAGCCATCTACGCCATGA
GTTTGCAGACTGTGACCTCGATCGCTCCCTTGTGCACGGCTCAGGGGTTT
CTGTCTACGTCAGGCAAGTGCAAGGGGAGGTGCCTATCTTTCACAGATCT
CACCCCAAGAGGTGCACAACTTCAAGCGAGCCTGGCAGATGGTTAGGCAT
CTTGGATAAGACTACTCCTTGTGAGCCTCCGGTTTGCTCAGGTGACAGAG
TACAGTCGATGGTTACGGCCCAGTCTTGGATGGGTGCCATTTACGACTAT
GTCTGGGTGCCTTACAACTGCTACTTCCACCTGTATTCCCCTAATGATAT
TTCTTATTGTGCAAGAGAAGCTGGCATCTCTTGGATACATGTCATGGGAG
ACAGCCTATCCCGAGAAATGGAGGCGTACCTCGCCTCAGTGTTTCATGTG
GAAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103967:3..608+

>mRNA_M-pyrifera_M_contig103967.842.1 ID=mRNA_M-pyrifera_M_contig103967.842.1|Name=mRNA_M-pyrifera_M_contig103967.842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig103967:3..608+ (Macrocystis pyrifera P11B4 male)
CTATTGAGCCATGATGTTATTCAAAGCGCACCCGTCTCTTCCCACTGGAA
TAGAGAATGGGGTGGCTACGAACTGGATGTGACTATCCGCGATGTGGGTA
TGTACAAACTGCGTGTTACGCTCAATGAGATTTGGGGTAGCTCTGAACCG
CTCTCCTCTGAGCCAGCACCTATTTGCGTCAGTAGCCATCTACGCCATGA
GTTTGCAGACTGTGACCTCGATCGCTCCCTTGTGCACGGCTCAGGGGTTT
CTGTCTACGTCAGGCAAGTGCAAGGGGAGGTGCCTATCTTTCACAGATCT
CACCCCAAGAGGTGCACAACTTCAAGCGAGCCTGGCAGATGGTTAGGCAT
CTTGGATAAGACTACTCCTTGTGAGCCTCCGGTTTGCTCAGGTGACAGAG
TACAGTCGATGGTTACGGCCCAGTCTTGGATGGGTGCCATTTACGACTAT
GTCTGGGTGCCTTACAACTGCTACTTCCACCTGTATTCCCCTAATGATAT
TTCTTATTGTGCAAGAGAAGCTGGCATCTCTTGGATACATGTCATGGGAG
ACAGCCTATCCCGAGAAATGGAGGCGTACCTCGCCTCAGTGTTTCATGTG
GAAGATCTATTGAGCCATGATGTTATTCAAAGCGCACCCGTCTCTTCCCA
CTGGAATAGAGAATGGGGTGGCTACGAACTGGATGTGACTATCCGCGATG
TGGGTATGTACAAACTGCGTGTTACGCTCAATGAGATTTGGGGTAGCTCT
GAACCGCTCTCCTCTGAGCCAGCACCTATTTGCGTCAGTAGCCATCTACG
CCATGAGTTTGCAGACTGTGACCTCGATCGCTCCCTTGTGCACGGCTCAG
GGGTTTCTGTCTACGTCAGGCAAGTGCAAGGGGAGGTGCCTATCTTTCAC
AGATCTCACCCCAAGAGGTGCACAACTTCAAGCGAGCCTGGCAGATGGTT
AGGCATCTTGGATAAGACTACTCCTTGTGAGCCTCCGGTTTGCTCAGGTG
ACAGAGTACAGTCGATGGTTACGGCCCAGTCTTGGATGGGTGCCATTTAC
GACTATGTCTGGGTGCCTTACAACTGCTACTTCCACCTGTATTCCCCTAA
TGATATTTCTTATTGTGCAAGAGAAGCTGGCATCTCTTGGATACATGTCA
TGGGAGACAGCCTATCCCGAGAAATGGAGGCGTACCTCGCCTCAGTGTTT
CATGTGGAAGAT
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