mRNA_M-pyrifera_M_contig10394.834.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10394.834.1
Unique NamemRNA_M-pyrifera_M_contig10394.834.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10394.834.1 vs. uniprot
Match: D7FYS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS3_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 7.740e-23
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 3 
Query:  120 QALDRTAGPDTLILLGVTRTDTEPDFFDALDKAGFEYNLVDQATHKGFGLFTVCRERRDE 299
            QAL+RTAG  TL+LLGVTRTDT P FFDALDKAGF YNLVDQA+HKGFGLFTV RE+ DE
Sbjct:  160 QALERTAGQHTLVLLGVTRTDTGPAFFDALDKAGFVYNLVDQASHKGFGLFTVQREQPDE 219
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BLAST of mRNA_M-pyrifera_M_contig10394.834.1 vs. uniprot
Match: W7U3Q4_9STRA (Nicotinamide N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3Q4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.870e-5
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 3 
Query:  123 ALDRTAGPDTLILLGVTRTDTEPDFFDALDKAGFEYNLVDQATHK-------GFGLFTVCR 284
            AL R +GP +LILLGVTRTDT P FF  L + GF+Y L   A  +       GF L +V R
Sbjct:  198 ALCRLSGPHSLILLGVTRTDTNPRFFQLLQEEGFDYCLTPVADGESSCTVAGGFALLSVVR 258
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10394.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYS3_ECTSI7.740e-2381.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7U3Q4_9STRA6.870e-549.18Nicotinamide N-methyltransferase, putative n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10394contigM-pyrifera_M_contig10394:8121..10418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue7.4e-20
Seed eggNOG ortholog2880.D7FYS3
Preferred nameEFM6
KEGG koko:K21804,ko:K21805
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-19_002320.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons2
Model size542
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10394.834.1prot_M-pyrifera_M_contig10394.834.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10394 8358..10350 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.0077937-UTR-M-pyrifera_M_contig10394:8120..83571622815545.0077937-UTR-M-pyrifera_M_contig10394:8120..8357Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10394 8121..8357 -
1692277457.195595-UTR-M-pyrifera_M_contig10394:8120..83571692277457.195595-UTR-M-pyrifera_M_contig10394:8120..8357Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10394 8121..8357 -
1622815545.042729-UTR-M-pyrifera_M_contig10394:10350..104181622815545.042729-UTR-M-pyrifera_M_contig10394:10350..10418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10394 10351..10418 -
1692277457.237462-UTR-M-pyrifera_M_contig10394:10350..104181692277457.237462-UTR-M-pyrifera_M_contig10394:10350..10418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10394 10351..10418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.0209646-CDS-M-pyrifera_M_contig10394:8357..84471622815545.0209646-CDS-M-pyrifera_M_contig10394:8357..8447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10394 8358..8447 -
1692277457.2086542-CDS-M-pyrifera_M_contig10394:8357..84471692277457.2086542-CDS-M-pyrifera_M_contig10394:8357..8447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10394 8358..8447 -
1622815545.0319731-CDS-M-pyrifera_M_contig10394:10203..103501622815545.0319731-CDS-M-pyrifera_M_contig10394:10203..10350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10394 10204..10350 -
1692277457.221837-CDS-M-pyrifera_M_contig10394:10203..103501692277457.221837-CDS-M-pyrifera_M_contig10394:10203..10350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10394 10204..10350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10394.834.1

>prot_M-pyrifera_M_contig10394.834.1 ID=prot_M-pyrifera_M_contig10394.834.1|Name=mRNA_M-pyrifera_M_contig10394.834.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MCERCYCRCHRCCCCCRQALDRTAGPDTLILLGVTRTDTEPDFFDALDKA
GFEYNLVDQATHKGFGLFTVCRERRDEE*
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mRNA from alignment at M-pyrifera_M_contig10394:8121..10418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10394.834.1 ID=mRNA_M-pyrifera_M_contig10394.834.1|Name=mRNA_M-pyrifera_M_contig10394.834.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2298bp|location=Sequence derived from alignment at M-pyrifera_M_contig10394:8121..10418- (Macrocystis pyrifera P11B4 male)
CGCCAACACATGCGATGTGTATCCTGCGGTCATATGCTCGGCTTTGAACT
GAGTTCGCGCATTGATGGATGTGCGAGCGATGTTACTGCCGCTGCCACCG
CTGTTGCTGCTGCTGCCGACAGGCCCTCGACCGCACCGCCGGACCAGACA
CGCTGATATTGCTCGGAGTTACCCGCACAGACACGGAACCTGACTTCTTC
GACGCCCTAGACAAGGTCAGAACCAAAGCAGAATTTTAGTGCGAAAAAAA
AAAGCTTTTTTTGTTCGGTGACCGGCTTTGATCGACGAGGGTGGCGCCGT
TCGCTTGCGGCGTATTGGAGGCTACTGCTGGTAGCCGTAGGTTGCTGCTG
ATGGCAGTAGTAGTTTGCTGCATGACACGCTGATGCTGCCCAGGGTTACC
CGCGCAGACACGCGGACTGTGTTTCTTCGACGCCCTAGACAAGGTCAGCG
CCTCACCGAATTTCAGGGTGGAAAATTACTCATTGTTTGGTGATCGGTTT
TGATCGGCGAGTTTGGCGCCGCTCCACGTAAGCGGTTGCGGGATGTTGAA
AGCTTCTGACGATACAAAACAACAGTGATTTGTTGTATGACTTGGAACAT
AGGCGTCACACCTTGGCTGACCAATGCTGAATGGCCATCTTGATCAATAA
ATTATTGGTGGGTAGCGCTGCTTCCCAAACCAGCATGGAGGCAAACGTAG
TCAAAGTCGGTCAAGATGAAGCAAGCGACCCCAGCGATTTCCCCCTGATT
TACAGCAGAATCGCGTTGGGTTTTTAGTCGTAGAATCGCGGTGGGATTAA
TCCACGGCCTGGATATTCTAGCTTGCTCTCTGCAGTTGCGAGTCACCAGA
CGGTGCCATACAGGCCATGTCTGCTGCCACAGACGCCATCTGACCACCTC
CCGCGTCCGTGACAAACCCCCAGACGAGAAAAAAAAACGGCATCGAGCCC
GTTGTTTCGTACCAAGTACTGGTACGTTTTTCGTCGGGTGTTTCATAAGC
CGCCTTAAACCTCCATATACACTGGCATGTAAAAACACGAGTCTGGACGG
AAGTGTAAAGGATGGTTTGGTCTTCACGTTCACCCTTTTTAGGACTGCAG
TCCTTTTTTTTGTTCTCATTTTCGGGTCTTGTTTGTGTTGCTGTGTTCTC
GTACCCGGTACGTTGGCGCTTCATTTGCTTGACCCATAATTTTGCGATTT
TTTGTTTTGTGTTTTTGGTCTTGCTCTGTCTCCCAGCCTGTGACCACATG
ATTAGTGTAGCACCACGCTGGAAATAAATATAGGTAACTATTGAGTTAAG
TTTTAATGTACAAAATATCACTATATTTAGGGACAAGAGTGTATTATCTC
TCTGTTGCGGGGGAAAATAGTAAATGGGACCAAATATTGTTAGTAAAGTT
AGGTAAATATATAGGTTTTTGTGTGTAACGTAGGTCCTATTTACTATGGC
CCCCCGTAATAAGACAAAGAGTCTGGACGGATACTGGGTGTACTGATGAA
GCTGGGTAGAAAGGACGATTTAGTGTGAGGACAGCACACACATGGTCCCG
TTCTGGGGAAAAAAACAGTCAAATTCTAAGTAGTCTGTCCCCAAAACGGG
CCTGACTGCTGTAGTCTGTTTTAACAAAAAGATTATAGGCCAAGCGCTCG
CTACAATTCCCGCCAGGGTGGGTACAAAATCACGATCGCATCGGAGGTTT
CTATCAAACATCACTTAGTGGCACGCCGCGCCGCGTGCCATGTTTTCGTT
TCATGCATGCAGAACCAACCGTGTTAACCCCTTCCAATCAGCACACCCTC
CTTTTTTTGGGACAAATCCCTTGGAGTTGGAGTGGGGGGTCATTTTTTGG
AATGAGAAAAAGGATCTATTCCTGTACGCGCTCGGGTTTGCACCGTGACC
AGGAAAACACGCTCTGTGTTTCGTGTTAACTTTTTGTCTTTCGTCTTTCG
GACGCCCTTTGTTGCACGCAGGCGGGGTTCGAGTACAACCTTGTAGACCA
GGCGACGCACAAGGGTTTCGGACTGTTCACCGTGTGCCGGGAGAGACGAG
ACGAAGAATAAAAAGTAGGGCTGCGCACTGGCAGGCTCAGTCAGTAGAGA
TTAGACTGCCGGCGTAGGCGGCACCTGGTATTTTCGTTAGTACCGTTCTC
TTGCGTAGTACAGTAGTACTATAATGCTTACTGCGGTTCAAGTATTATTT
TTATGCTTGCTTGTTTTCTTCCGGTCATATTAACAGTACGCTTTTTTGTG
ACCACGGGATTGGTTTATGGGAAAAGAGCCAATATAAGAACATTATCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10394:8121..10418-

>mRNA_M-pyrifera_M_contig10394.834.1 ID=mRNA_M-pyrifera_M_contig10394.834.1|Name=mRNA_M-pyrifera_M_contig10394.834.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig10394:8121..10418- (Macrocystis pyrifera P11B4 male)
ATGTGCGAGCGATGTTACTGCCGCTGCCACCGCTGTTGCTGCTGCTGCCG
ACAGGCCCTCGACCGCACCGCCGGACCAGACACGCTGATATTGCTCGGAG
TTACCCGCACAGACACGGAACCTGACTTCTTCGACGCCCTAGACAAGATG
TGCGAGCGATGTTACTGCCGCTGCCACCGCTGTTGCTGCTGCTGCCGACA
GGCCCTCGACCGCACCGCCGGACCAGACACGCTGATATTGCTCGGAGTTA
CCCGCACAGACACGGAACCTGACTTCTTCGACGCCCTAGACAAGGCGGGG
TTCGAGTACAACCTTGTAGACCAGGCGACGCACAAGGGTTTCGGACTGTT
CACCGTGTGCCGGGAGAGACGAGACGAAGAATAAGCGGGGTTCGAGTACA
ACCTTGTAGACCAGGCGACGCACAAGGGTTTCGGACTGTTCACCGTGTGC
CGGGAGAGACGAGACGAAGAATAA
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