mRNA_M-pyrifera_M_contig103866.823.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103866.823.1
Unique NamemRNA_M-pyrifera_M_contig103866.823.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103866.823.1 vs. uniprot
Match: UPI001CEC696E (phytanoyl-CoA dioxygenase family protein n=1 Tax=Streptomyces sp. TML10 TaxID=2872625 RepID=UPI001CEC696E)

HSP 1 Score: 63.9 bits (154), Expect = 7.120e-10
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 IASSYFGKPAVLANWRAYRQLERSPIRHRAWEWHNDQRA----EELKFMLLLTDVHSDGQPMQYSLGSHQRVDIPAWQAETIFDMDDAL 255
            I   YF  P+   + R YRQ    P+R+RAW++H D +     EE+K M+LLTDV  DGQ ++Y  GS Q       Q +T F +D+AL
Sbjct:  515 ILDEYFDGPSRFVSARGYRQGPCKPLRYRAWDYHQDMKTQGPREEVKVMVLLTDVTRDGQALRYVCGSQQVRWNFRTQRQTKFTLDEAL 603
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BLAST of mRNA_M-pyrifera_M_contig103866.823.1 vs. uniprot
Match: UPI001672B73E (hypothetical protein n=1 Tax=Streptomyces lucensis TaxID=67319 RepID=UPI001672B73E)

HSP 1 Score: 61.6 bits (148), Expect = 4.630e-9
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 IASSYFGKPAVLANWRAYRQLERSPIRHRAWEWHNDQRA----EELKFMLLLTDVHSDGQPMQYSLGSHQRVDIPAWQAETI----FDMDDAL 255
            I   YF  P+   + R YRQ    P+R+RAW++H D +     EELK M+LLTDV  DGQ ++Y  GS Q+V+   W  ET     F +D+A+
Sbjct:  515 ILDGYFDGPSRFVSARGYRQGPCKPLRYRAWDYHQDMKTKGPFEELKVMVLLTDVAPDGQALRYVCGS-QKVE---WDFETQRGTKFTLDEAV 603
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103866.823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001CEC696E7.120e-1041.57phytanoyl-CoA dioxygenase family protein n=1 Tax=S... [more]
UPI001672B73E4.630e-941.94hypothetical protein n=1 Tax=Streptomyces lucensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103866contigM-pyrifera_M_contig103866:21..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.555657-CDS-M-pyrifera_M_contig103866:20..2931622815544.555657-CDS-M-pyrifera_M_contig103866:20..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103866 21..293 -
1692277457.0064678-CDS-M-pyrifera_M_contig103866:20..2931692277457.0064678-CDS-M-pyrifera_M_contig103866:20..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103866 21..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103866.823.1prot_M-pyrifera_M_contig103866.823.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103866 21..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103866.823.1

>prot_M-pyrifera_M_contig103866.823.1 ID=prot_M-pyrifera_M_contig103866.823.1|Name=mRNA_M-pyrifera_M_contig103866.823.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
IASSYFGKPAVLANWRAYRQLERSPIRHRAWEWHNDQRAEELKFMLLLTD
VHSDGQPMQYSLGSHQRVDIPAWQAETIFDMDDALHLSDAR
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mRNA from alignment at M-pyrifera_M_contig103866:21..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103866.823.1 ID=mRNA_M-pyrifera_M_contig103866.823.1|Name=mRNA_M-pyrifera_M_contig103866.823.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig103866:21..293- (Macrocystis pyrifera P11B4 male)
ATCGCATCCTCGTATTTCGGCAAGCCGGCAGTGCTCGCTAACTGGCGCGC
CTACAGGCAGTTGGAGCGCTCTCCGATTCGGCATCGTGCATGGGAATGGC
ACAACGACCAGCGTGCCGAAGAATTAAAGTTCATGCTCCTACTCACGGAC
GTTCATTCCGACGGCCAGCCGATGCAGTACTCGCTTGGAAGTCATCAACG
TGTCGATATTCCCGCTTGGCAGGCCGAAACGATATTCGATATGGATGATG
CCCTCCATCTGTCCGACGCTCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103866:21..293-

>mRNA_M-pyrifera_M_contig103866.823.1 ID=mRNA_M-pyrifera_M_contig103866.823.1|Name=mRNA_M-pyrifera_M_contig103866.823.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig103866:21..293- (Macrocystis pyrifera P11B4 male)
ATCGCATCCTCGTATTTCGGCAAGCCGGCAGTGCTCGCTAACTGGCGCGC
CTACAGGCAGTTGGAGCGCTCTCCGATTCGGCATCGTGCATGGGAATGGC
ACAACGACCAGCGTGCCGAAGAATTAAAGTTCATGCTCCTACTCACGGAC
GTTCATTCCGACGGCCAGCCGATGCAGTACTCGCTTGGAAGTCATCAACG
TGTCGATATTCCCGCTTGGCAGGCCGAAACGATATTCGATATGGATGATG
CCCTCCATCTGTCCGACGCTCGAATCGCATCCTCGTATTTCGGCAAGCCG
GCAGTGCTCGCTAACTGGCGCGCCTACAGGCAGTTGGAGCGCTCTCCGAT
TCGGCATCGTGCATGGGAATGGCACAACGACCAGCGTGCCGAAGAATTAA
AGTTCATGCTCCTACTCACGGACGTTCATTCCGACGGCCAGCCGATGCAG
TACTCGCTTGGAAGTCATCAACGTGTCGATATTCCCGCTTGGCAGGCCGA
AACGATATTCGATATGGATGATGCCCTCCATCTGTCCGACGCTCGA
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